Wall clock time and date at job start Mon Mar 30 2020 01:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 N 1.40583 * 127.38179 * 60.02632 * 4 2 1 6 6 N 1.28911 * 106.83439 * 180.02562 * 5 4 2 7 7 N 1.28419 * 110.33789 * 359.97438 * 6 5 4 8 8 C 1.31544 * 110.49889 * 359.72913 * 7 6 5 9 9 S 1.76205 * 126.45031 * 180.28040 * 8 7 6 10 10 C 1.81000 * 99.99969 * 0.18595 * 9 8 7 11 11 C 1.50701 * 109.46989 * 179.97438 * 10 9 8 12 12 O 1.21293 * 120.00142 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99978 * 179.97438 * 11 10 9 14 14 C 1.37099 * 120.00073 * 179.97438 * 13 11 10 15 15 H 1.07997 * 119.99981 * 0.02562 * 14 13 11 16 16 C 1.38945 * 120.00031 * 180.02562 * 14 13 11 17 17 N 1.31416 * 119.99944 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00286 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46868 * 89.99694 * 18 16 14 20 20 H 1.48498 * 109.47283 * 209.99800 * 18 16 14 21 21 H 1.48497 * 109.46784 * 329.99944 * 18 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.09001 * 109.47058 * 299.99542 * 10 9 8 30 30 H 1.08995 * 109.47140 * 60.00066 * 10 9 8 31 31 H 0.96999 * 119.99984 * 0.02562 * 13 11 10 32 32 H 0.96998 * 120.00035 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 7 1.7768 -0.3481 -2.5380 6 7 2.3919 -1.2192 -3.2622 7 7 2.9953 -2.0733 -2.5169 8 6 2.8042 -1.7921 -1.2462 9 16 3.4458 -2.6839 0.1314 10 6 4.3664 -3.9797 -0.7342 11 6 5.0203 -4.8898 0.2734 12 8 4.8783 -4.6824 1.4600 13 7 5.7629 -5.9342 -0.1440 14 6 6.3582 -6.7619 0.7726 15 1 6.2318 -6.5772 1.8291 16 6 7.1242 -7.8383 0.3422 17 7 7.6944 -8.6320 1.2208 18 14 7.3435 -8.1574 -1.4852 19 1 8.5413 -7.4287 -1.9746 20 1 7.5215 -9.6136 -1.7156 21 1 6.1420 -7.6834 -2.2180 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 3.6826 -4.5574 -1.3562 30 1 5.1318 -3.5240 -1.3621 31 1 5.8767 -6.0999 -1.0930 32 1 8.2295 -9.3832 0.9204 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076610088.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:30 Heat of formation + Delta-G solvation = 78.427178 kcal Electronic energy + Delta-G solvation = -17877.453395 eV Core-core repulsion = 14809.366706 eV Total energy + Delta-G solvation = -3068.086689 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.88621 -38.53340 -36.95769 -34.23656 -32.35018 -31.98888 -31.87302 -29.68908 -27.77952 -25.16856 -24.51557 -23.39857 -21.43173 -19.75573 -18.82260 -17.90741 -16.80163 -16.62459 -16.18037 -15.17938 -14.98537 -14.85871 -14.39553 -13.90855 -13.58348 -13.36411 -13.12619 -12.79697 -12.74748 -12.44667 -12.39824 -12.11741 -12.04190 -11.53520 -11.28989 -11.15510 -11.01871 -10.71655 -10.61317 -10.51718 -10.11710 -9.76214 -8.92454 -8.38165 -7.94397 -6.46445 -3.99633 0.73024 0.84060 1.90254 1.97102 2.19456 2.95744 3.01063 3.09826 3.43714 3.92091 3.98800 4.32678 4.34739 4.50918 4.58842 4.90737 5.02679 5.08083 5.14762 5.24498 5.31294 5.35916 5.39066 5.45002 5.66300 5.67261 5.71343 6.01179 7.36376 7.92390 8.35639 8.38048 8.74406 9.22035 9.53320 10.65274 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.036072 B = 0.004065 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.028334 B = 6885.733809 C = 7470.699153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 C -0.162 4.162 4 N -0.360 5.360 5 N -0.089 5.089 6 N -0.038 5.038 7 N -0.341 5.341 8 C 0.201 3.799 9 S 0.115 5.885 10 C -0.138 4.138 11 C 0.458 3.542 12 O -0.568 6.568 13 N -0.569 5.569 14 C -0.311 4.311 15 H 0.123 0.877 16 C 0.048 3.952 17 N -0.870 5.870 18 Si 0.878 3.122 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.266 1.266 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.116 0.884 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.376 0.624 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.275 15.812 -3.724 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 C -0.220 4.220 4 N -0.161 5.161 5 N -0.076 5.076 6 N -0.034 5.034 7 N -0.198 5.198 8 C -0.183 4.183 9 S 0.340 5.660 10 C -0.291 4.291 11 C 0.242 3.758 12 O -0.453 6.453 13 N -0.206 5.206 14 C -0.440 4.440 15 H 0.141 0.859 16 C -0.157 4.157 17 N -0.509 5.509 18 Si 0.703 3.297 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.192 1.192 22 H 0.085 0.915 23 H 0.092 0.908 24 H 0.104 0.896 25 H 0.134 0.866 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.209 0.791 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.531 16.170 -3.117 20.103 hybrid contribution 0.441 -0.658 -1.905 2.063 sum -11.090 15.512 -5.022 19.719 Atomic orbital electron populations 1.22164 0.91957 1.03749 1.04115 1.21759 0.96594 0.94605 0.82826 1.22167 1.02401 0.93322 1.04115 1.51790 1.35985 1.20305 1.07996 1.82334 1.21377 1.20189 0.83712 1.77818 1.03945 0.98178 1.23424 1.74951 1.24023 1.23109 0.97698 1.28555 0.96137 0.92402 1.01245 1.86441 1.57677 1.26714 0.95195 1.23845 1.03636 0.98863 1.02740 1.18678 0.84929 0.83930 0.88284 1.90605 1.64726 1.73460 1.16467 1.42061 1.44766 1.25220 1.08553 1.19457 1.26757 1.05842 0.91929 0.85892 1.25060 0.96374 0.95796 0.98472 1.69613 1.31405 1.16010 1.33860 0.86689 0.79225 0.79293 0.84445 1.19278 1.19860 1.19157 0.91465 0.90827 0.89583 0.86632 0.89587 0.91459 0.90828 0.86552 0.86553 0.79103 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.49 37.16 0.35 -0.76 16 2 C 0.14 1.23 3.75 -67.93 -0.25 0.97 16 3 C -0.16 -1.12 9.49 37.16 0.35 -0.76 16 4 N -0.36 -4.52 3.33 -54.80 -0.18 -4.70 16 5 N -0.09 -1.29 13.85 60.35 0.84 -0.45 16 6 N -0.04 -0.62 13.38 60.35 0.81 0.19 16 7 N -0.34 -5.53 11.57 30.50 0.35 -5.18 16 8 C 0.20 2.88 8.15 -89.18 -0.73 2.15 16 9 S 0.12 1.67 20.58 -107.50 -2.21 -0.54 16 10 C -0.14 -2.22 5.72 36.01 0.21 -2.01 16 11 C 0.46 9.73 7.80 -10.99 -0.09 9.65 16 12 O -0.57 -14.09 15.44 5.55 0.09 -14.01 16 13 N -0.57 -12.85 5.09 -10.96 -0.06 -12.91 16 14 C -0.31 -8.38 10.16 -14.93 -0.15 -8.53 16 15 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 16 C 0.05 1.26 5.50 -17.47 -0.10 1.16 16 17 N -0.87 -24.38 13.96 55.50 0.77 -23.60 16 18 Si 0.88 18.60 27.74 -169.99 -4.71 13.88 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.27 -5.16 6.52 56.52 0.37 -4.79 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.12 0.89 7.32 -51.93 -0.38 0.51 16 26 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.12 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.12 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.38 7.46 5.76 -40.82 -0.24 7.23 16 32 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 299.62 15.07 4.52 4.52 Total: -1.00 -31.79 299.62 -3.75 -35.54 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -3.55 Total: 5.41 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -0.40 Total: 1.86 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 2.53 Total: -46.67 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.09 Total: -14.01 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.71 Total: 13.88 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.21 Total: -0.54 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.79 -3.75 -35.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076610088.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.972 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds