Wall clock time and date at job start Mon Mar 30 2020 01:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99882 * 2 1 4 4 C 1.53007 * 109.46988 * 66.04739 * 3 2 1 5 5 C 1.52998 * 109.47235 * 179.97438 * 4 3 2 6 6 S 1.80993 * 109.47286 * 179.97438 * 5 4 3 7 7 C 1.76197 * 100.00061 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00330 * 0.02562 * 7 6 5 9 9 C 1.38798 * 119.99793 * 179.97438 * 7 6 5 10 10 N 1.31632 * 120.00303 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99750 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47440 * 60.00355 * 11 9 7 13 13 H 1.48504 * 109.47252 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47145 * 300.00086 * 11 9 7 15 15 C 1.46905 * 110.99969 * 236.04798 * 2 1 3 16 16 C 1.50702 * 109.47120 * 293.95357 * 15 2 1 17 17 C 1.33381 * 125.20534 * 90.00053 * 16 15 2 18 18 C 1.38427 * 114.92374 * 180.02562 * 17 16 15 19 19 C 1.33387 * 114.91991 * 0.25034 * 18 17 16 20 20 S 1.75886 * 109.59194 * 359.63459 * 19 18 17 21 21 H 1.09005 * 109.47164 * 183.94850 * 1 2 3 22 22 H 1.08993 * 109.47427 * 303.94852 * 1 2 3 23 23 H 1.09002 * 109.47046 * 63.95381 * 1 2 3 24 24 H 1.08997 * 109.47170 * 186.04351 * 3 2 1 25 25 H 1.09002 * 109.47082 * 306.04666 * 3 2 1 26 26 H 1.09004 * 109.46538 * 299.99996 * 4 3 2 27 27 H 1.08999 * 109.47141 * 59.99518 * 4 3 2 28 28 H 1.09003 * 109.47052 * 300.00210 * 5 4 3 29 29 H 1.09002 * 109.46830 * 59.99929 * 5 4 3 30 30 H 0.96997 * 120.00135 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.46857 * 173.95488 * 15 2 1 32 32 H 1.08995 * 109.47186 * 53.95602 * 15 2 1 33 33 H 1.08001 * 122.53741 * 0.05729 * 17 16 15 34 34 H 1.08002 * 122.53759 * 179.97438 * 18 17 16 35 35 H 1.08002 * 125.20431 * 179.75072 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1802 3.4856 1.3187 6 16 1.7490 4.2973 2.8778 7 6 2.4831 5.8771 2.6136 8 1 3.0027 6.0834 1.6896 9 6 2.3926 6.8569 3.5926 10 7 1.7588 6.6057 4.7186 11 14 3.1703 8.5320 3.3121 12 1 2.5634 9.1652 2.1138 13 1 2.9351 9.3921 4.4997 14 1 4.6312 8.3703 3.1002 15 6 1.9955 -0.7660 -1.1376 16 6 1.6369 -2.2204 -0.9730 17 6 0.5242 -2.7949 -1.4321 18 6 0.4107 -4.1473 -1.1596 19 6 1.4289 -4.6700 -0.4746 20 16 2.6215 -3.4199 -0.1451 21 1 -0.3634 -1.0253 0.0708 22 1 -0.3634 0.5738 0.8524 23 1 -0.3633 0.4513 -0.9233 24 1 3.0797 1.3444 -0.1082 25 1 1.5610 1.9273 -0.8309 26 1 0.5471 2.0843 1.4265 27 1 2.0657 1.5014 2.1492 28 1 3.2645 3.4582 1.2106 29 1 1.7462 4.0417 0.4877 30 1 1.6960 7.2902 5.4029 31 1 3.0797 -0.6611 -1.1756 32 1 1.5612 -0.3872 -2.0628 33 1 -0.2309 -2.2465 -1.9758 34 1 -0.4400 -4.7338 -1.4739 35 1 1.5096 -5.7032 -0.1706 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080626664.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:16 Heat of formation + Delta-G solvation = 24.822970 kcal Electronic energy + Delta-G solvation = -15483.892170 eV Core-core repulsion = 12927.481491 eV Total energy + Delta-G solvation = -2556.410679 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.71785 -37.12800 -33.16083 -32.40443 -30.33977 -27.44536 -26.34668 -25.46683 -23.74420 -22.06643 -20.57935 -19.39889 -17.47000 -17.22734 -15.91309 -15.69280 -15.41933 -14.78893 -14.50084 -14.23506 -13.82563 -13.10072 -12.95101 -12.83206 -12.82056 -12.41034 -12.08189 -11.76277 -11.60354 -11.43767 -11.25502 -11.03473 -10.85617 -10.78168 -10.62100 -10.26330 -9.53985 -9.03393 -8.91270 -8.60399 -8.35645 -8.27539 -6.50455 -6.20728 -3.90886 0.81765 1.49718 1.88515 2.54263 3.22784 3.24320 3.28912 3.56428 4.01369 4.24719 4.60517 4.87545 4.93498 5.13283 5.15161 5.23181 5.34197 5.38339 5.39901 5.47929 5.55377 5.66403 5.75764 5.88183 5.92250 5.98715 6.08866 6.10146 6.29073 6.37367 6.61092 6.76515 6.98645 7.04392 7.61975 8.38253 9.25276 10.87419 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.053706 B = 0.002753 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.233901 B =10169.617223 C =10183.706632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.536 5.536 3 C 0.060 3.940 4 C -0.093 4.093 5 C -0.113 4.113 6 S -0.132 6.132 7 C -0.517 4.517 8 H 0.071 0.929 9 C 0.071 3.929 10 N -0.870 5.870 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.121 3.879 16 C -0.159 4.159 17 C -0.143 4.143 18 C -0.135 4.135 19 C -0.223 4.223 20 S 0.120 5.880 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.024 0.976 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.268 0.732 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 -20.036 -12.951 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.260 5.260 3 C -0.069 4.069 4 C -0.132 4.132 5 C -0.262 4.262 6 S 0.096 5.904 7 C -0.665 4.665 8 H 0.090 0.910 9 C -0.138 4.138 10 N -0.506 5.506 11 Si 0.744 3.256 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.199 1.199 15 C -0.008 4.008 16 C -0.277 4.277 17 C -0.174 4.174 18 C -0.165 4.165 19 C -0.359 4.359 20 S 0.383 5.617 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.042 0.958 24 H 0.092 0.908 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.291 -20.546 -10.689 23.161 hybrid contribution -0.555 1.826 -2.629 3.249 sum -0.846 -18.719 -13.318 22.989 Atomic orbital electron populations 1.22516 0.87173 1.02343 1.00979 1.61985 1.08422 1.14176 1.41453 1.22222 0.99946 0.86645 0.98063 1.21284 1.01349 0.94022 0.96557 1.23232 1.02284 0.97501 1.03169 1.84639 1.74245 1.13287 1.18183 1.22652 1.40541 0.97569 1.05738 0.91047 1.25014 0.95235 0.99010 0.94540 1.70014 1.39972 1.34441 1.06130 0.86230 0.79591 0.81916 0.77815 1.19973 1.20819 1.19938 1.20541 1.00577 0.86952 0.92726 1.24391 0.99246 0.99269 1.04794 1.20117 0.98304 0.94812 1.04149 1.20118 0.99975 0.95049 1.01398 1.25650 0.99488 1.03274 1.07477 1.84377 1.22877 0.99089 1.55318 0.91291 0.90441 0.95760 0.90788 0.94772 0.91567 0.90721 0.92131 0.92379 0.92264 0.89704 0.92960 0.84684 0.84580 0.82134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.06 60.07 0.54 0.75 16 2 N -0.54 -6.69 4.75 -244.36 -1.16 -7.86 16 3 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 4 C -0.09 -1.55 5.15 -26.73 -0.14 -1.69 16 5 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 6 S -0.13 -3.49 21.44 -107.50 -2.30 -5.80 16 7 C -0.52 -14.96 9.50 30.94 0.29 -14.67 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 10 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 11 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.12 1.28 5.46 -4.97 -0.03 1.26 16 16 C -0.16 -1.65 5.44 -36.00 -0.20 -1.85 16 17 C -0.14 -1.35 8.59 -41.21 -0.35 -1.71 16 18 C -0.13 -1.17 10.18 -41.21 -0.42 -1.59 16 19 C -0.22 -1.94 11.23 29.04 0.33 -1.61 16 20 S 0.12 1.19 23.33 -107.50 -2.51 -1.32 16 21 H 0.07 0.76 6.30 -51.93 -0.33 0.43 16 22 H 0.08 0.97 6.30 -51.93 -0.33 0.64 16 23 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 25 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 26 H 0.07 1.11 6.47 -51.93 -0.34 0.77 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.06 1.17 8.14 -51.91 -0.42 0.74 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 32 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 318.37 15.07 4.80 4.80 Total: -1.00 -31.20 318.37 -10.50 -41.70 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.16 Total: -2.23 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 0.13 Total: -20.45 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: -0.43 Total: -33.35 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -4.81 Total: -7.11 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.20 -10.50 -41.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080626664.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.519 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds