Wall clock time and date at job start Mon Mar 30 2020 01:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99882 * 2 1 4 4 C 1.53007 * 109.46988 * 66.04739 * 3 2 1 5 5 C 1.52998 * 109.47235 * 179.97438 * 4 3 2 6 6 S 1.80993 * 109.47286 * 179.97438 * 5 4 3 7 7 C 1.76197 * 100.00061 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00330 * 0.02562 * 7 6 5 9 9 C 1.38798 * 119.99793 * 179.97438 * 7 6 5 10 10 N 1.31632 * 120.00303 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99750 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47440 * 60.00355 * 11 9 7 13 13 H 1.48504 * 109.47252 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47145 * 300.00086 * 11 9 7 15 15 C 1.46905 * 110.99969 * 236.04798 * 2 1 3 16 16 C 1.50702 * 109.47120 * 293.95357 * 15 2 1 17 17 C 1.33381 * 125.20534 * 90.00053 * 16 15 2 18 18 C 1.38427 * 114.92374 * 180.02562 * 17 16 15 19 19 C 1.33387 * 114.91991 * 0.25034 * 18 17 16 20 20 S 1.75886 * 109.59194 * 359.63459 * 19 18 17 21 21 H 1.09005 * 109.47164 * 183.94850 * 1 2 3 22 22 H 1.08993 * 109.47427 * 303.94852 * 1 2 3 23 23 H 1.09002 * 109.47046 * 63.95381 * 1 2 3 24 24 H 1.08997 * 109.47170 * 186.04351 * 3 2 1 25 25 H 1.09002 * 109.47082 * 306.04666 * 3 2 1 26 26 H 1.09004 * 109.46538 * 299.99996 * 4 3 2 27 27 H 1.08999 * 109.47141 * 59.99518 * 4 3 2 28 28 H 1.09003 * 109.47052 * 300.00210 * 5 4 3 29 29 H 1.09002 * 109.46830 * 59.99929 * 5 4 3 30 30 H 0.96997 * 120.00135 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.46857 * 173.95488 * 15 2 1 32 32 H 1.08995 * 109.47186 * 53.95602 * 15 2 1 33 33 H 1.08001 * 122.53741 * 0.05729 * 17 16 15 34 34 H 1.08002 * 122.53759 * 179.97438 * 18 17 16 35 35 H 1.08002 * 125.20431 * 179.75072 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1802 3.4856 1.3187 6 16 1.7490 4.2973 2.8778 7 6 2.4831 5.8771 2.6136 8 1 3.0027 6.0834 1.6896 9 6 2.3926 6.8569 3.5926 10 7 1.7588 6.6057 4.7186 11 14 3.1703 8.5320 3.3121 12 1 2.5634 9.1652 2.1138 13 1 2.9351 9.3921 4.4997 14 1 4.6312 8.3703 3.1002 15 6 1.9955 -0.7660 -1.1376 16 6 1.6369 -2.2204 -0.9730 17 6 0.5242 -2.7949 -1.4321 18 6 0.4107 -4.1473 -1.1596 19 6 1.4289 -4.6700 -0.4746 20 16 2.6215 -3.4199 -0.1451 21 1 -0.3634 -1.0253 0.0708 22 1 -0.3634 0.5738 0.8524 23 1 -0.3633 0.4513 -0.9233 24 1 3.0797 1.3444 -0.1082 25 1 1.5610 1.9273 -0.8309 26 1 0.5471 2.0843 1.4265 27 1 2.0657 1.5014 2.1492 28 1 3.2645 3.4582 1.2106 29 1 1.7462 4.0417 0.4877 30 1 1.6960 7.2902 5.4029 31 1 3.0797 -0.6611 -1.1756 32 1 1.5612 -0.3872 -2.0628 33 1 -0.2309 -2.2465 -1.9758 34 1 -0.4400 -4.7338 -1.4739 35 1 1.5096 -5.7032 -0.1706 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080626664.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:16 Heat of formation + Delta-G solvation = 6.567311 kcal Electronic energy + Delta-G solvation = -15484.683795 eV Core-core repulsion = 12927.481491 eV Total energy + Delta-G solvation = -2557.202304 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55875 -37.99098 -34.63643 -34.37801 -31.23251 -28.36775 -27.91204 -27.15047 -24.70169 -23.06651 -21.77285 -20.09787 -19.55046 -17.99524 -16.96969 -16.89218 -16.67917 -16.36302 -15.91474 -15.49379 -15.17786 -14.53248 -13.95443 -13.77852 -13.57351 -13.47648 -13.29623 -13.15419 -13.01725 -12.88044 -12.63051 -12.50898 -12.30613 -12.19893 -11.62381 -11.58016 -11.36492 -11.12791 -10.31513 -9.65920 -9.34565 -9.26120 -8.66551 -8.36776 -6.13361 0.10716 0.78588 1.18727 1.31391 1.41098 1.47906 1.73881 1.86884 2.29021 2.97240 3.01933 3.33900 3.82446 3.97885 4.11089 4.20747 4.27937 4.35698 4.45706 4.49219 4.62808 4.65610 4.72677 4.75055 4.80074 4.83715 5.05863 5.18527 5.23821 5.32525 5.39664 5.41263 5.62221 6.03741 6.05364 6.18276 7.05075 8.72480 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.053706 B = 0.002753 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.233901 B =10169.617223 C =10183.706632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.071 3.929 4 C -0.082 4.082 5 C -0.087 4.087 6 S -0.200 6.200 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.014 3.986 10 N -0.908 5.908 11 Si 0.994 3.006 12 H -0.264 1.264 13 H -0.275 1.275 14 H -0.264 1.264 15 C 0.124 3.876 16 C -0.176 4.176 17 C -0.141 4.141 18 C -0.143 4.143 19 C -0.219 4.219 20 S 0.089 5.911 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.035 0.965 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.271 0.729 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.148 0.852 34 H 0.159 0.841 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 -20.412 -14.591 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.273 5.273 3 C -0.058 4.058 4 C -0.121 4.121 5 C -0.236 4.236 6 S 0.028 5.972 7 C -0.686 4.686 8 H 0.092 0.908 9 C -0.191 4.191 10 N -0.545 5.545 11 Si 0.816 3.184 12 H -0.189 1.189 13 H -0.200 1.200 14 H -0.189 1.189 15 C -0.005 4.005 16 C -0.294 4.294 17 C -0.172 4.172 18 C -0.173 4.173 19 C -0.354 4.354 20 S 0.353 5.647 21 H 0.093 0.907 22 H 0.082 0.918 23 H 0.053 0.947 24 H 0.100 0.900 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.165 0.835 34 H 0.176 0.824 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.165 -20.940 -12.338 24.305 hybrid contribution -0.638 1.806 -2.157 2.885 sum -0.803 -19.134 -14.495 24.018 Atomic orbital electron populations 1.22481 0.86774 1.02572 1.00899 1.61910 1.08909 1.13473 1.42974 1.22014 1.00511 0.87276 0.95999 1.21158 1.00848 0.91796 0.98262 1.23149 1.02549 0.98790 0.99122 1.84675 1.74945 1.14040 1.23515 1.23013 1.40931 0.98566 1.06122 0.90846 1.26090 0.95521 1.03432 0.94026 1.70154 1.41189 1.35988 1.07129 0.85062 0.78832 0.76315 0.78181 1.18861 1.19984 1.18899 1.20538 1.00738 0.86893 0.92308 1.24410 0.99887 0.99172 1.05918 1.20371 0.98053 0.95338 1.03456 1.20411 1.00676 0.94991 1.01202 1.25951 0.98699 1.03849 1.06933 1.84465 1.24046 1.00241 1.55994 0.90719 0.91788 0.94693 0.90046 0.93878 0.91839 0.91891 0.91803 0.91889 0.91964 0.89474 0.91796 0.83483 0.82364 0.80048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.06 127.69 1.16 1.61 16 2 N -0.55 -12.90 4.75 -927.03 -4.41 -17.30 16 3 C 0.07 1.81 4.96 86.31 0.43 2.24 16 4 C -0.08 -2.68 5.15 30.60 0.16 -2.52 16 5 C -0.09 -3.50 5.67 71.98 0.41 -3.09 16 6 S -0.20 -10.85 21.44 -56.49 -1.21 -12.06 16 7 C -0.54 -31.44 9.50 67.95 0.65 -30.79 16 8 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 9 C 0.01 0.81 5.49 84.86 0.47 1.28 16 10 N -0.91 -55.48 13.22 21.65 0.29 -55.19 16 11 Si 0.99 44.17 29.55 68.60 2.03 46.19 16 12 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 13 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 14 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 15 C 0.12 2.41 5.46 85.56 0.47 2.88 16 16 C -0.18 -3.40 5.44 24.59 0.13 -3.27 16 17 C -0.14 -2.37 8.59 21.22 0.18 -2.19 16 18 C -0.14 -2.14 10.18 21.22 0.22 -1.93 16 19 C -0.22 -3.38 11.23 66.72 0.75 -2.63 16 20 S 0.09 1.70 23.33 -56.49 -1.32 0.38 16 21 H 0.07 1.53 6.30 -2.38 -0.02 1.52 16 22 H 0.06 1.56 6.30 -2.39 -0.02 1.54 16 23 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.08 1.96 7.93 -2.39 -0.02 1.94 16 25 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 26 H 0.06 2.12 6.47 -2.38 -0.02 2.10 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.09 1.63 7.93 -2.39 -0.02 1.61 16 32 H 0.06 1.09 8.12 -2.39 -0.02 1.07 16 33 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -67.07 318.37 1.45 -65.62 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.06 Total: 10.77 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 5.01 Total: -38.41 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -4.12 Total: -72.49 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -9.15 SS G_CDS: -2.53 Total: -11.68 kcal Total: -67.07 1.45 -65.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080626664.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.190 kcal (2) G-P(sol) polarization free energy of solvation -67.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds