Wall clock time and date at job start Mon Mar 30 2020 01:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00283 * 2 1 4 4 C 1.50708 * 109.46760 * 293.95026 * 3 2 1 5 5 H 1.07997 * 120.00113 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99808 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99452 * 180.02562 * 6 4 3 8 8 Si 1.86792 * 119.99987 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47213 * 90.00143 * 8 6 4 10 10 H 1.48506 * 109.47273 * 209.99912 * 8 6 4 11 11 H 1.48500 * 109.47486 * 330.00319 * 8 6 4 12 12 C 1.46906 * 110.99888 * 123.94961 * 2 1 3 13 13 C 1.52997 * 109.46848 * 66.04509 * 12 2 1 14 14 C 1.50706 * 109.47203 * 179.97438 * 13 12 2 15 15 C 1.38459 * 120.01668 * 90.00072 * 14 13 12 16 16 F 1.35105 * 120.01813 * 359.97438 * 15 14 13 17 17 C 1.38443 * 119.96150 * 179.97438 * 15 14 13 18 18 C 1.38221 * 120.00333 * 0.02562 * 17 15 14 19 19 C 1.38204 * 120.03789 * 359.97438 * 18 17 15 20 20 C 1.38286 * 120.01897 * 269.72873 * 14 13 12 21 21 Cl 1.73603 * 120.00433 * 359.97438 * 20 14 13 22 22 H 1.08997 * 109.47334 * 296.05250 * 1 2 3 23 23 H 1.09000 * 109.46674 * 56.05127 * 1 2 3 24 24 H 1.08995 * 109.47296 * 176.04950 * 1 2 3 25 25 H 1.08993 * 109.47196 * 53.94614 * 3 2 1 26 26 H 1.09000 * 109.47010 * 173.95423 * 3 2 1 27 27 H 0.97003 * 119.99398 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47121 * 186.04343 * 12 2 1 29 29 H 1.09000 * 109.47141 * 306.04541 * 12 2 1 30 30 H 1.08998 * 109.47584 * 300.00097 * 13 12 2 31 31 H 1.09005 * 109.46901 * 60.00396 * 13 12 2 32 32 H 1.08000 * 119.99890 * 179.97438 * 17 15 14 33 33 H 1.08001 * 119.98505 * 180.02562 * 18 17 15 34 34 H 1.07997 * 119.98357 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2986 5 1 1.0740 1.5114 -2.0486 6 6 2.0269 3.3494 -1.5286 7 7 1.7136 3.9391 -2.6617 8 14 2.9988 4.2765 -0.2306 9 1 4.4515 4.0642 -0.4542 10 1 2.6905 5.7263 -0.3229 11 1 2.6272 3.7763 1.1174 12 6 1.9954 -0.7659 1.1377 13 6 1.6314 -2.2425 0.9705 14 6 2.1719 -3.0284 2.1373 15 6 1.3977 -3.2052 3.2715 16 9 0.1575 -2.6729 3.3331 17 6 1.8953 -3.9279 4.3425 18 6 3.1643 -4.4719 4.2793 19 6 3.9371 -4.2955 3.1472 20 6 3.4392 -3.5782 2.0735 21 17 4.4078 -3.3637 0.6488 22 1 -0.3634 0.4513 0.9232 23 1 -0.3633 0.5739 -0.8525 24 1 -0.3633 -1.0252 -0.0708 25 1 1.5611 1.9274 0.8308 26 1 3.0798 1.3443 0.1082 27 1 1.9883 4.8552 -2.8237 28 1 3.0797 -0.6611 1.1757 29 1 1.5611 -0.3871 2.0629 30 1 0.5471 -2.3474 0.9324 31 1 2.0658 -2.6213 0.0453 32 1 1.2921 -4.0658 5.2276 33 1 3.5520 -5.0359 5.1148 34 1 4.9284 -4.7213 3.0986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217186.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:55 Heat of formation + Delta-G solvation = -45.194825 kcal Electronic energy + Delta-G solvation = -18262.599337 eV Core-core repulsion = 15134.895576 eV Total energy + Delta-G solvation = -3127.703761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.99410 -40.37038 -38.55955 -37.43568 -35.04413 -33.97175 -31.41866 -30.51147 -29.03520 -27.01187 -24.34344 -23.83434 -22.42187 -21.63593 -19.00106 -18.74968 -17.87627 -17.14562 -16.76100 -16.46974 -16.17118 -16.06010 -15.69496 -15.02291 -14.76382 -14.51746 -14.31144 -14.21278 -14.05642 -13.35361 -13.09373 -13.03001 -12.70893 -12.51225 -12.37337 -12.32126 -12.22768 -11.90768 -11.83797 -11.63760 -11.47661 -10.79660 -9.82198 -9.72703 -9.10136 -8.29736 -6.33137 -0.02793 0.02887 1.07305 1.32977 1.34125 1.44923 2.32850 2.40879 3.02669 3.11961 3.22167 3.68711 3.72773 3.91523 4.09204 4.22210 4.25229 4.41672 4.46254 4.56820 4.61463 4.76698 4.87578 4.89373 4.95883 5.00664 5.12673 5.18863 5.21120 5.22355 5.50014 5.73239 5.94861 6.29948 6.60150 6.72487 7.30282 8.86828 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.004752 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.164253 B = 5890.686291 C = 6318.003371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.545 5.545 3 C 0.172 3.828 4 C -0.517 4.517 5 H 0.040 0.960 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.945 3.055 9 H -0.263 1.263 10 H -0.279 1.279 11 H -0.255 1.255 12 C 0.070 3.930 13 C -0.074 4.074 14 C -0.122 4.122 15 C 0.091 3.909 16 F -0.143 7.143 17 C -0.144 4.144 18 C -0.071 4.071 19 C -0.116 4.116 20 C -0.022 4.022 21 Cl -0.061 7.061 22 H 0.017 0.983 23 H 0.052 0.948 24 H 0.078 0.922 25 H -0.014 1.014 26 H 0.027 0.973 27 H 0.268 0.732 28 H 0.067 0.933 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.182 0.818 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.360 -19.962 17.880 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.269 5.269 3 C 0.045 3.955 4 C -0.555 4.555 5 H 0.058 0.942 6 C -0.187 4.187 7 N -0.587 5.587 8 Si 0.768 3.232 9 H -0.188 1.188 10 H -0.204 1.204 11 H -0.179 1.179 12 C -0.058 4.058 13 C -0.111 4.111 14 C -0.124 4.124 15 C 0.071 3.929 16 F -0.122 7.122 17 C -0.162 4.162 18 C -0.089 4.089 19 C -0.134 4.134 20 C -0.049 4.049 21 Cl -0.032 7.032 22 H 0.035 0.965 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.004 0.996 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.183 0.817 33 H 0.200 0.800 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.565 -19.980 17.215 26.766 hybrid contribution -0.304 1.463 0.337 1.532 sum 4.261 -18.518 17.552 25.868 Atomic orbital electron populations 1.22233 0.87477 1.01356 0.99798 1.61833 1.08344 1.14810 1.41883 1.19949 0.95031 0.85704 0.94865 1.21238 1.35036 0.97578 1.01658 0.94168 1.25812 0.96944 0.98333 0.97644 1.70046 1.48498 1.13940 1.26197 0.85749 0.79573 0.77807 0.80044 1.18826 1.20416 1.17891 1.21963 0.99802 0.92937 0.91136 1.20481 1.01515 0.93066 0.96062 1.19745 0.94478 1.01690 0.96481 1.17676 0.80811 0.98778 0.95591 1.91492 1.39447 1.84657 1.96593 1.21599 0.98241 0.98202 0.98182 1.21412 0.91903 0.97416 0.98168 1.21499 1.02201 0.98183 0.91544 1.20812 0.91748 1.01497 0.90808 1.98407 1.69830 1.96125 1.38829 0.96465 0.92927 0.90385 0.99639 0.95495 0.92352 0.91401 0.95938 0.90490 0.89553 0.81731 0.80027 0.81910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.14 127.69 1.17 2.77 16 2 N -0.54 -23.89 4.75 -927.05 -4.41 -28.29 16 3 C 0.17 8.65 3.79 85.56 0.32 8.97 16 4 C -0.52 -30.83 9.01 25.60 0.23 -30.60 16 5 H 0.04 2.66 7.37 -2.91 -0.02 2.64 16 6 C 0.01 0.60 5.47 84.65 0.46 1.07 16 7 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 8 Si 0.94 45.06 27.47 68.60 1.88 46.95 16 9 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 12 C 0.07 2.49 4.94 86.30 0.43 2.92 16 13 C -0.07 -2.21 4.70 29.85 0.14 -2.07 16 14 C -0.12 -3.06 5.14 -19.80 -0.10 -3.16 16 15 C 0.09 2.06 7.24 22.37 0.16 2.22 16 16 F -0.14 -3.73 16.48 44.97 0.74 -2.99 16 17 C -0.14 -2.14 10.03 22.31 0.22 -1.92 16 18 C -0.07 -0.78 10.04 22.26 0.22 -0.56 16 19 C -0.12 -1.70 9.83 22.30 0.22 -1.48 16 20 C -0.02 -0.48 6.31 22.32 0.14 -0.34 16 21 Cl -0.06 -1.49 27.29 -2.72 -0.07 -1.56 16 22 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.05 2.40 6.76 -2.39 -0.02 2.39 16 24 H 0.08 2.67 6.47 -2.39 -0.02 2.65 16 25 H -0.01 -0.71 7.18 -2.39 -0.02 -0.73 16 26 H 0.03 1.34 7.36 -2.39 -0.02 1.32 16 27 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 28 H 0.07 2.43 7.93 -2.39 -0.02 2.41 16 29 H 0.02 0.80 8.12 -2.39 -0.02 0.78 16 30 H 0.08 2.29 6.05 -2.39 -0.01 2.27 16 31 H 0.09 2.69 6.89 -2.38 -0.02 2.67 16 32 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 33 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 34 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -69.63 301.10 3.11 -66.52 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: 1.05 Total: 1.34 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 3.62 Total: -22.18 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -4.11 Total: -88.08 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.74 Total: -2.99 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.95 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.07 Total: -1.56 kcal Total: -69.63 3.11 -66.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217186.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.326 kcal (2) G-P(sol) polarization free energy of solvation -69.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds