Wall clock time and date at job start Mon Mar 30 2020 00:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37677 * 126.50380 * 2 1 4 4 C 1.50703 * 126.51955 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47171 * 180.02562 * 4 3 2 6 6 C 1.34385 * 106.95997 * 180.24210 * 3 2 1 7 7 N 1.34360 * 108.34441 * 359.60741 * 6 3 2 8 8 C 1.31267 * 109.30493 * 0.40669 * 7 6 3 9 9 S 1.76200 * 125.80197 * 179.79066 * 8 7 6 10 10 C 1.80992 * 100.00375 * 359.95464 * 9 8 7 11 11 C 1.50700 * 109.47419 * 180.02562 * 10 9 8 12 12 O 1.21288 * 120.00107 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99735 * 179.97438 * 11 10 9 14 14 C 1.37105 * 119.99468 * 180.02562 * 13 11 10 15 15 H 1.07994 * 120.00043 * 359.97438 * 14 13 11 16 16 C 1.38951 * 119.99670 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00100 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99936 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47570 * 89.99721 * 18 16 14 20 20 H 1.48504 * 109.47017 * 209.99949 * 18 16 14 21 21 H 1.48505 * 109.46678 * 329.99446 * 18 16 14 22 22 H 1.09009 * 109.46967 * 89.99919 * 1 2 3 23 23 H 1.09005 * 109.47214 * 209.99721 * 1 2 3 24 24 H 1.08992 * 109.47144 * 330.00389 * 1 2 3 25 25 H 1.09002 * 109.47152 * 59.99926 * 4 3 2 26 26 H 1.09001 * 109.46980 * 300.00027 * 4 3 2 27 27 H 0.96701 * 113.99881 * 180.02562 * 5 4 3 28 28 H 1.08001 * 125.83051 * 179.76041 * 6 3 2 29 29 H 1.09005 * 109.47449 * 300.00123 * 10 9 8 30 30 H 1.09002 * 109.46988 * 59.99643 * 10 9 8 31 31 H 0.97001 * 120.00239 * 0.02562 * 13 11 10 32 32 H 0.96998 * 119.99836 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2840 1.1067 0.0000 4 6 1.8440 2.5480 -0.0005 5 8 2.9934 3.3970 -0.0010 6 6 3.5504 0.6571 -0.0054 7 7 3.5223 -0.6862 0.0000 8 6 2.2747 -1.0941 -0.0001 9 16 1.7391 -2.7728 0.0008 10 6 3.3416 -3.6141 0.0004 11 6 3.1260 -5.1056 0.0004 12 8 1.9997 -5.5555 0.0002 13 7 4.1849 -5.9395 -0.0004 14 6 3.9887 -7.2964 -0.0009 15 1 2.9858 -7.6970 -0.0002 16 6 5.0803 -8.1561 -0.0012 17 7 6.3007 -7.6686 -0.0016 18 14 4.8131 -10.0049 -0.0026 19 1 4.7426 -10.4939 -1.4030 20 1 5.9421 -10.6688 0.6973 21 1 3.5420 -10.3218 0.6970 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 1.2461 2.7457 0.8892 26 1 1.2468 2.7452 -0.8908 27 1 2.7850 4.3413 -0.0009 28 1 4.4391 1.2708 -0.0106 29 1 3.9018 -3.3283 -0.8900 30 1 3.9026 -3.3276 0.8900 31 1 5.0857 -5.5796 -0.0007 32 1 7.0626 -8.2688 -0.0022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085217620.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:10 Heat of formation + Delta-G solvation = -22.414889 kcal Electronic energy + Delta-G solvation = -17598.985283 eV Core-core repulsion = 14494.233003 eV Total energy + Delta-G solvation = -3104.752281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.83363 -38.16167 -37.14380 -34.11483 -34.02549 -31.39728 -30.71434 -29.21300 -27.06226 -26.00414 -24.61371 -21.76343 -20.39090 -19.42972 -18.08760 -17.67082 -17.49950 -16.21393 -15.90739 -15.45488 -14.84474 -14.56194 -14.47469 -14.43610 -14.03837 -13.85802 -13.09316 -13.05711 -12.80822 -12.49192 -12.09020 -11.99734 -11.54357 -11.08650 -10.76644 -10.41778 -10.32936 -10.22142 -9.96351 -9.60255 -9.58528 -9.07884 -8.60995 -8.05650 -7.12259 -6.46975 -3.88817 1.41852 1.84099 2.47753 2.73887 3.11512 3.15340 3.25304 3.31240 3.77609 3.88307 4.14262 4.50732 4.64713 4.82718 4.88279 4.89531 5.03212 5.18321 5.19179 5.22481 5.70486 5.73934 5.91747 6.15435 6.21755 6.74853 6.87945 7.19409 7.50531 7.95784 7.96431 8.49205 9.08621 9.43089 9.91862 10.70077 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.047985 B = 0.003426 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.380945 B = 8169.998825 C = 8727.629591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.446 5.446 3 C -0.048 4.048 4 C 0.167 3.833 5 O -0.560 6.560 6 C 0.015 3.985 7 N -0.493 5.493 8 C 0.188 3.812 9 S 0.053 5.947 10 C -0.118 4.118 11 C 0.451 3.549 12 O -0.586 6.586 13 N -0.547 5.547 14 C -0.303 4.303 15 H 0.106 0.894 16 C 0.025 3.975 17 N -0.895 5.895 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.268 1.268 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.387 0.613 28 H 0.174 0.826 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.396 0.604 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.713 20.032 0.043 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.134 5.134 3 C -0.164 4.164 4 C 0.088 3.912 5 O -0.365 6.365 6 C -0.135 4.135 7 N -0.216 5.216 8 C -0.181 4.181 9 S 0.282 5.718 10 C -0.270 4.270 11 C 0.235 3.765 12 O -0.472 6.472 13 N -0.182 5.182 14 C -0.433 4.433 15 H 0.124 0.876 16 C -0.177 4.177 17 N -0.535 5.535 18 Si 0.760 3.240 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.193 1.193 22 H 0.098 0.902 23 H 0.112 0.888 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.235 0.765 28 H 0.191 0.809 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.230 0.770 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.503 18.062 0.052 20.410 hybrid contribution 0.860 1.033 -0.013 1.344 sum -8.643 19.096 0.039 20.961 Atomic orbital electron populations 1.22093 0.76352 1.04845 1.03920 1.45065 1.06963 1.04524 1.56814 1.20691 0.91602 0.88741 1.15338 1.19869 0.86995 0.84577 0.99793 1.86428 1.31957 1.20440 1.97713 1.22053 0.96048 0.90477 1.04899 1.70890 1.17124 1.11859 1.21680 1.25953 0.88418 0.95869 1.07904 1.85923 1.09294 0.84058 1.92574 1.23561 0.97888 0.97778 1.07764 1.18982 0.86133 0.85614 0.85785 1.90546 1.22809 1.77044 1.56833 1.41751 1.07340 1.06305 1.62839 1.19750 0.95101 0.80267 1.48168 0.87617 1.25324 0.94551 1.01005 0.96856 1.69622 0.98001 1.36480 1.49440 0.85810 0.78119 0.81600 0.78482 1.20267 1.20817 1.19284 0.90173 0.88788 0.89731 0.92669 0.92628 0.76505 0.80911 0.87350 0.87361 0.76990 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 10.84 59.85 0.65 1.26 16 2 N -0.45 -5.93 3.20 -119.72 -0.38 -6.31 16 3 C -0.05 -0.62 6.94 -81.33 -0.56 -1.19 16 4 C 0.17 1.37 7.19 36.01 0.26 1.63 16 5 O -0.56 -4.56 12.97 -35.23 -0.46 -5.02 16 6 C 0.02 0.24 11.20 -17.81 -0.20 0.04 16 7 N -0.49 -8.81 10.60 -13.45 -0.14 -8.95 16 8 C 0.19 3.12 7.96 -88.75 -0.71 2.42 16 9 S 0.05 0.93 20.77 -107.50 -2.23 -1.30 16 10 C -0.12 -2.30 5.68 36.01 0.20 -2.09 16 11 C 0.45 10.91 7.80 -10.98 -0.09 10.82 16 12 O -0.59 -15.90 15.44 5.55 0.09 -15.81 16 13 N -0.55 -14.09 5.29 -10.96 -0.06 -14.15 16 14 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 15 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 16 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 17 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 18 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 23 H 0.09 0.82 7.73 -51.93 -0.40 0.42 16 24 H 0.08 0.49 7.91 -51.93 -0.41 0.08 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.39 1.03 9.12 45.56 0.42 1.44 16 28 H 0.17 2.41 7.85 -52.49 -0.41 2.00 16 29 H 0.11 2.02 8.14 -51.91 -0.42 1.60 16 30 H 0.11 2.02 8.14 -51.91 -0.42 1.60 16 31 H 0.40 9.81 7.90 -40.82 -0.32 9.49 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 301.67 15.07 4.55 4.55 Total: -1.00 -34.57 301.67 -6.38 -40.96 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -2.76 Total: 8.93 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.69 Total: 4.87 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.14 Total: -53.07 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.37 Total: -20.83 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.23 Total: -1.30 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.57 -6.38 -40.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085217620.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.540 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds