Wall clock time and date at job start Mon Mar 30 2020 00:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37677 * 126.50380 * 2 1 4 4 C 1.50703 * 126.51955 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47171 * 180.02562 * 4 3 2 6 6 C 1.34385 * 106.95997 * 180.24210 * 3 2 1 7 7 N 1.34360 * 108.34441 * 359.60741 * 6 3 2 8 8 C 1.31267 * 109.30493 * 0.40669 * 7 6 3 9 9 S 1.76200 * 125.80197 * 179.79066 * 8 7 6 10 10 C 1.80992 * 100.00375 * 359.95464 * 9 8 7 11 11 C 1.50700 * 109.47419 * 180.02562 * 10 9 8 12 12 O 1.21288 * 120.00107 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99735 * 179.97438 * 11 10 9 14 14 C 1.37105 * 119.99468 * 180.02562 * 13 11 10 15 15 H 1.07994 * 120.00043 * 359.97438 * 14 13 11 16 16 C 1.38951 * 119.99670 * 180.02562 * 14 13 11 17 17 N 1.31414 * 120.00100 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99936 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47570 * 89.99721 * 18 16 14 20 20 H 1.48504 * 109.47017 * 209.99949 * 18 16 14 21 21 H 1.48505 * 109.46678 * 329.99446 * 18 16 14 22 22 H 1.09009 * 109.46967 * 89.99919 * 1 2 3 23 23 H 1.09005 * 109.47214 * 209.99721 * 1 2 3 24 24 H 1.08992 * 109.47144 * 330.00389 * 1 2 3 25 25 H 1.09002 * 109.47152 * 59.99926 * 4 3 2 26 26 H 1.09001 * 109.46980 * 300.00027 * 4 3 2 27 27 H 0.96701 * 113.99881 * 180.02562 * 5 4 3 28 28 H 1.08001 * 125.83051 * 179.76041 * 6 3 2 29 29 H 1.09005 * 109.47449 * 300.00123 * 10 9 8 30 30 H 1.09002 * 109.46988 * 59.99643 * 10 9 8 31 31 H 0.97001 * 120.00239 * 0.02562 * 13 11 10 32 32 H 0.96998 * 119.99836 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2840 1.1067 0.0000 4 6 1.8440 2.5480 -0.0005 5 8 2.9934 3.3970 -0.0010 6 6 3.5504 0.6571 -0.0054 7 7 3.5223 -0.6862 0.0000 8 6 2.2747 -1.0941 -0.0001 9 16 1.7391 -2.7728 0.0008 10 6 3.3416 -3.6141 0.0004 11 6 3.1260 -5.1056 0.0004 12 8 1.9997 -5.5555 0.0002 13 7 4.1849 -5.9395 -0.0004 14 6 3.9887 -7.2964 -0.0009 15 1 2.9858 -7.6970 -0.0002 16 6 5.0803 -8.1561 -0.0012 17 7 6.3007 -7.6686 -0.0016 18 14 4.8131 -10.0049 -0.0026 19 1 4.7426 -10.4939 -1.4030 20 1 5.9421 -10.6688 0.6973 21 1 3.5420 -10.3218 0.6970 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 1.2461 2.7457 0.8892 26 1 1.2468 2.7452 -0.8908 27 1 2.7850 4.3413 -0.0009 28 1 4.4391 1.2708 -0.0106 29 1 3.9018 -3.3283 -0.8900 30 1 3.9026 -3.3276 0.8900 31 1 5.0857 -5.5796 -0.0007 32 1 7.0626 -8.2688 -0.0022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085217620.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:10 Heat of formation + Delta-G solvation = -49.440694 kcal Electronic energy + Delta-G solvation = -17600.157210 eV Core-core repulsion = 14494.233003 eV Total energy + Delta-G solvation = -3105.924208 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.91190 -40.16198 -37.72939 -36.10228 -35.09985 -33.44207 -31.69407 -30.90671 -27.90970 -26.99893 -26.51954 -22.90494 -21.71317 -21.00045 -20.05101 -18.76087 -18.27343 -17.78012 -17.13936 -16.66567 -16.46945 -16.26922 -15.82474 -15.41857 -15.38231 -14.84693 -14.58099 -14.28573 -14.04263 -13.68037 -13.58924 -13.48839 -12.91074 -12.77780 -12.46751 -12.11578 -11.70281 -11.58320 -11.37983 -11.11391 -10.62414 -10.61043 -10.22965 -10.10228 -8.51976 -8.39833 -6.02748 0.09252 0.77573 1.05114 1.35887 1.42568 1.56092 1.80022 1.87061 1.94839 2.27981 3.03210 3.13896 3.29387 3.76413 3.94544 4.10886 4.13672 4.18529 4.27643 4.31491 4.41056 4.49634 4.60132 4.69863 5.22717 5.36972 5.65825 5.88308 5.89508 6.44949 6.77022 6.97862 7.01165 7.39653 7.91407 8.65197 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.047985 B = 0.003426 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.380945 B = 8169.998825 C = 8727.629591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.438 5.438 3 C -0.024 4.024 4 C 0.169 3.831 5 O -0.582 6.582 6 C -0.026 4.026 7 N -0.524 5.524 8 C 0.159 3.841 9 S 0.053 5.947 10 C -0.108 4.108 11 C 0.452 3.548 12 O -0.617 6.617 13 N -0.556 5.556 14 C -0.338 4.338 15 H 0.087 0.913 16 C -0.010 4.010 17 N -0.916 5.916 18 Si 0.999 3.001 19 H -0.269 1.269 20 H -0.270 1.270 21 H -0.269 1.269 22 H 0.097 0.903 23 H 0.089 0.911 24 H 0.122 0.878 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.411 0.589 28 H 0.177 0.823 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.399 0.601 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.761 21.623 0.034 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.125 5.125 3 C -0.142 4.142 4 C 0.090 3.910 5 O -0.391 6.391 6 C -0.176 4.176 7 N -0.247 5.247 8 C -0.211 4.211 9 S 0.281 5.719 10 C -0.260 4.260 11 C 0.238 3.762 12 O -0.505 6.505 13 N -0.192 5.192 14 C -0.467 4.467 15 H 0.105 0.895 16 C -0.211 4.211 17 N -0.556 5.556 18 Si 0.822 3.178 19 H -0.194 1.194 20 H -0.195 1.195 21 H -0.194 1.194 22 H 0.115 0.885 23 H 0.108 0.892 24 H 0.140 0.860 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.263 0.737 28 H 0.194 0.806 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.233 0.767 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.562 19.694 0.042 22.348 hybrid contribution 1.151 0.741 -0.012 1.369 sum -9.411 20.436 0.030 22.499 Atomic orbital electron populations 1.22502 0.73545 1.06553 1.05588 1.45329 1.08595 1.03565 1.55054 1.21486 0.90749 0.90802 1.11154 1.20061 0.87166 0.81512 1.02273 1.86377 1.32503 1.22414 1.97840 1.22296 0.97751 0.89862 1.07657 1.70746 1.18336 1.13524 1.22094 1.25561 0.88956 0.95856 1.10712 1.85724 1.07507 0.85249 1.93370 1.23295 0.99717 0.94538 1.08413 1.19632 0.85254 0.87375 0.83965 1.90514 1.23949 1.78286 1.57748 1.41814 1.07818 1.06125 1.63395 1.19774 0.94818 0.81586 1.50556 0.89516 1.26173 0.93992 1.05310 0.95628 1.69691 0.98624 1.38172 1.49148 0.84840 0.78196 0.75961 0.78808 1.19418 1.19475 1.19378 0.88495 0.89206 0.85993 0.89884 0.89967 0.73711 0.80571 0.86646 0.86650 0.76714 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.84 10.84 127.77 1.38 2.22 16 2 N -0.44 -10.80 3.20 -532.69 -1.71 -12.50 16 3 C -0.02 -0.57 6.94 40.76 0.28 -0.29 16 4 C 0.17 2.10 7.19 71.24 0.51 2.61 16 5 O -0.58 -7.68 12.97 -148.98 -1.93 -9.61 16 6 C -0.03 -0.79 11.20 83.42 0.93 0.15 16 7 N -0.52 -18.81 10.60 -196.47 -2.08 -20.89 16 8 C 0.16 5.22 7.96 179.69 1.43 6.65 16 9 S 0.05 1.88 20.77 -56.49 -1.17 0.71 16 10 C -0.11 -4.30 5.68 71.24 0.40 -3.90 16 11 C 0.45 22.49 7.80 87.66 0.68 23.18 16 12 O -0.62 -34.39 15.44 -3.06 -0.05 -34.44 16 13 N -0.56 -29.48 5.29 -306.98 -1.62 -31.11 16 14 C -0.34 -19.31 9.68 84.04 0.81 -18.49 16 15 H 0.09 5.20 7.16 -2.91 -0.02 5.18 16 16 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 17 N -0.92 -50.00 13.05 21.66 0.28 -49.72 16 18 Si 1.00 42.73 29.55 68.60 2.03 44.76 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 22 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 23 H 0.09 1.40 7.73 -2.38 -0.02 1.38 16 24 H 0.12 0.84 7.91 -2.39 -0.02 0.82 16 25 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.41 0.76 9.12 -74.06 -0.68 0.08 16 28 H 0.18 4.94 7.85 -2.91 -0.02 4.91 16 29 H 0.12 4.42 8.14 -2.39 -0.02 4.40 16 30 H 0.12 4.42 8.14 -2.39 -0.02 4.40 16 31 H 0.40 20.35 7.90 -92.71 -0.73 19.62 16 32 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -75.99 301.67 0.42 -75.57 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.24 Total: 25.20 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 6.91 Total: 12.04 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -5.13 Total: -114.22 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -1.98 Total: -44.05 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.17 Total: 0.71 kcal Total: -75.99 0.42 -75.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085217620.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.129 kcal (2) G-P(sol) polarization free energy of solvation -75.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds