Wall clock time and date at job start Mon Mar 30 2020 01:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99588 * 2 1 4 4 H 1.48491 * 109.47524 * 272.65155 * 3 2 1 5 5 H 1.48501 * 109.47217 * 32.65654 * 3 2 1 6 6 H 1.48504 * 109.46902 * 152.64983 * 3 2 1 7 7 C 1.37867 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99814 * 355.15313 * 7 2 1 9 9 C 1.50697 * 120.00459 * 175.15833 * 7 2 1 10 10 C 1.53001 * 115.55222 * 89.37145 * 9 7 2 11 11 N 1.46498 * 109.46975 * 60.18696 * 10 9 7 12 12 C 1.34526 * 124.45632 * 266.76345 * 11 10 9 13 13 O 1.21440 * 125.71157 * 0.02562 * 12 11 10 14 14 C 1.47819 * 108.57729 * 179.97438 * 12 11 10 15 15 C 1.38563 * 134.29777 * 179.97438 * 14 12 11 16 16 C 1.38613 * 119.71996 * 180.02562 * 15 14 12 17 17 C 1.38238 * 120.45587 * 359.97438 * 16 15 14 18 18 C 1.38606 * 120.45984 * 0.02562 * 17 16 15 19 19 C 1.38562 * 119.72256 * 359.97438 * 18 17 16 20 20 C 1.34520 * 124.46188 * 86.74306 * 11 10 9 21 21 O 1.21446 * 125.70677 * 359.97438 * 20 11 10 22 22 C 1.53000 * 117.49958 * 235.04764 * 9 7 2 23 23 C 1.53002 * 117.49465 * 303.70129 * 9 7 2 24 24 H 0.96999 * 120.00066 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47018 * 300.18374 * 10 9 7 26 26 H 1.08995 * 109.47053 * 180.18766 * 10 9 7 27 27 H 1.08002 * 120.14473 * 0.04538 * 15 14 12 28 28 H 1.07994 * 119.77135 * 180.27437 * 16 15 14 29 29 H 1.08004 * 119.76530 * 179.97438 * 17 16 15 30 30 H 1.07999 * 120.13861 * 180.02562 * 18 17 16 31 31 H 1.09001 * 117.49887 * 215.00059 * 22 9 7 32 32 H 1.08997 * 117.50264 * 0.02562 * 22 9 7 33 33 H 1.08995 * 117.50265 * 359.97438 * 23 9 7 34 34 H 1.09009 * 117.49673 * 144.96987 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4405 2.0790 -1.3985 5 1 1.4757 2.6358 0.7555 6 1 3.5735 1.4248 0.6433 7 6 2.0046 -1.1939 -0.0005 8 1 1.4675 -2.1277 0.0781 9 6 3.5075 -1.1962 -0.1107 10 6 4.2666 -1.1244 1.2158 11 7 3.9154 -2.2817 2.0426 12 6 2.9356 -2.2894 2.9644 13 8 2.2129 -1.3527 3.2385 14 6 2.8851 -3.6291 3.5868 15 6 2.1017 -4.2099 4.5712 16 6 2.3201 -5.5299 4.9335 17 6 3.3132 -6.2700 4.3194 18 6 4.1045 -5.7022 3.3332 19 6 3.8976 -4.3837 2.9607 20 6 4.5299 -3.4767 1.9797 21 8 5.4493 -3.7628 1.2396 22 6 4.1320 -2.0205 -1.2382 23 6 4.1283 -0.4920 -1.3189 24 1 -0.4850 0.8400 0.0004 25 1 3.9961 -0.2078 1.7401 26 1 5.3390 -1.1288 1.0214 27 1 1.3239 -3.6368 5.0539 28 1 1.7071 -5.9848 5.6975 29 1 3.4740 -7.2974 4.6108 30 1 4.8786 -6.2852 2.8566 31 1 5.0835 -2.5118 -1.0350 32 1 3.4558 -2.5609 -1.9007 33 1 3.4497 -0.0275 -2.0342 34 1 5.0773 0.0228 -1.1685 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259608.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:01 Heat of formation + Delta-G solvation = 16.321688 kcal Electronic energy + Delta-G solvation = -20704.498347 eV Core-core repulsion = 17569.522202 eV Total energy + Delta-G solvation = -3134.976145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.83100 -38.40362 -38.01894 -36.81214 -35.07993 -32.06153 -31.58414 -31.08408 -27.32295 -25.48828 -24.71342 -22.93222 -21.86320 -21.56648 -19.87482 -18.91120 -17.45284 -16.95411 -16.36887 -16.08951 -15.56666 -14.97419 -14.75279 -14.43603 -14.13267 -13.92101 -13.66892 -13.39110 -12.93976 -12.67342 -12.43041 -12.31601 -12.00290 -11.61906 -11.10589 -10.73258 -10.59996 -10.32620 -10.09985 -9.81108 -9.71353 -9.24869 -9.17796 -9.02218 -8.97926 -8.54440 -8.45015 -6.07250 -4.10178 0.30269 1.02128 2.30422 2.87199 3.31567 3.40843 3.41995 3.53199 3.71210 3.91995 4.45374 4.62941 4.68573 4.83916 4.93456 5.06434 5.21670 5.26160 5.39090 5.66713 5.77227 5.85234 5.98208 6.02992 6.04465 6.10350 6.16328 6.21169 6.48076 6.51270 6.60258 6.73226 6.99019 7.13273 7.31548 7.73904 7.74997 8.25516 8.50635 8.93284 9.56400 11.05134 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.007214 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.590967 B = 3880.209019 C = 4568.569271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.087 3.913 3 Si 0.882 3.118 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.485 4.485 8 H 0.072 0.928 9 C -0.023 4.023 10 C 0.144 3.856 11 N -0.551 5.551 12 C 0.570 3.430 13 O -0.436 6.436 14 C -0.126 4.126 15 C -0.052 4.052 16 C -0.101 4.101 17 C -0.107 4.107 18 C -0.052 4.052 19 C -0.137 4.137 20 C 0.574 3.426 21 O -0.476 6.476 22 C -0.174 4.174 23 C -0.191 4.191 24 H 0.264 0.736 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.678 -10.054 9.537 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.117 4.117 3 Si 0.711 3.289 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.186 1.186 7 C -0.522 4.522 8 H 0.090 0.910 9 C -0.024 4.024 10 C 0.024 3.976 11 N -0.290 5.290 12 C 0.357 3.643 13 O -0.304 6.304 14 C -0.130 4.130 15 C -0.071 4.071 16 C -0.119 4.119 17 C -0.125 4.125 18 C -0.070 4.070 19 C -0.141 4.141 20 C 0.363 3.637 21 O -0.350 6.350 22 C -0.212 4.212 23 C -0.229 4.229 24 H 0.074 0.926 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.608 -9.462 9.243 15.260 hybrid contribution 0.237 0.954 -0.180 0.999 sum 7.846 -8.508 9.064 14.700 Atomic orbital electron populations 1.69882 1.06421 1.27063 1.49486 1.24904 0.94504 0.98913 0.93346 0.86820 0.80498 0.83600 0.78016 1.20559 1.21962 1.18618 1.20044 0.86063 0.94409 1.51711 0.91034 1.19727 0.95859 1.01277 0.85579 1.21662 0.97919 0.85639 0.92365 1.46298 1.32783 1.13857 1.36084 1.18154 0.79572 0.87479 0.79054 1.90818 1.38717 1.39950 1.60951 1.20844 0.98126 0.95368 0.98623 1.20802 0.97335 0.94654 0.94309 1.21386 0.97549 0.93479 0.99495 1.21355 0.95166 1.00271 0.95675 1.20733 0.98551 0.92233 0.95519 1.20751 0.98722 0.95675 0.98953 1.18270 0.81636 0.81979 0.81840 1.90727 1.26681 1.78005 1.39538 1.22884 1.01293 0.92701 1.04296 1.22937 1.01118 0.95261 1.03553 0.92597 0.89012 0.91046 0.84204 0.84512 0.84570 0.84439 0.90185 0.89665 0.89111 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.60 13.96 55.43 0.77 -26.83 16 2 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 3 Si 0.88 22.16 24.91 -169.99 -4.23 17.92 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.26 -6.12 5.66 56.52 0.32 -5.80 16 7 C -0.49 -13.70 8.86 -34.45 -0.31 -14.01 16 8 H 0.07 2.26 8.06 -52.48 -0.42 1.83 16 9 C -0.02 -0.54 1.06 -155.66 -0.16 -0.71 16 10 C 0.14 3.10 5.32 -4.04 -0.02 3.08 16 11 N -0.55 -11.34 2.49 -117.62 -0.29 -11.64 16 12 C 0.57 11.82 7.61 -12.45 -0.09 11.73 16 13 O -0.44 -10.45 17.63 5.42 0.10 -10.35 16 14 C -0.13 -2.07 6.41 -104.83 -0.67 -2.74 16 15 C -0.05 -0.66 10.09 -39.32 -0.40 -1.06 16 16 C -0.10 -0.95 10.04 -39.44 -0.40 -1.35 16 17 C -0.11 -0.96 10.04 -39.45 -0.40 -1.36 16 18 C -0.05 -0.60 10.09 -39.33 -0.40 -1.00 16 19 C -0.14 -2.15 6.41 -104.83 -0.67 -2.82 16 20 C 0.57 10.80 8.02 -12.46 -0.10 10.70 16 21 O -0.48 -9.50 17.31 5.41 0.09 -9.41 16 22 C -0.17 -3.76 9.95 -26.70 -0.27 -4.03 16 23 C -0.19 -4.12 7.63 -26.70 -0.20 -4.32 16 24 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 25 H 0.09 2.05 6.28 -51.93 -0.33 1.72 16 26 H 0.07 1.37 8.00 -51.93 -0.42 0.95 16 27 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 30 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.08 1.63 7.73 -51.93 -0.40 1.23 16 32 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 33 H 0.09 2.05 7.23 -51.93 -0.38 1.67 16 34 H 0.07 1.42 8.14 -51.92 -0.42 0.99 16 LS Contribution 297.27 15.07 4.48 4.48 Total: -1.00 -33.52 297.27 -6.96 -40.48 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.69 Total: 0.80 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -4.18 Total: -5.46 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.48 Total: -38.46 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.19 Total: -19.76 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.23 Total: 17.92 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.52 -6.96 -40.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259608.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.805 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds