Wall clock time and date at job start Mon Mar 30 2020 01:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99588 * 2 1 4 4 H 1.48491 * 109.47524 * 272.65155 * 3 2 1 5 5 H 1.48501 * 109.47217 * 32.65654 * 3 2 1 6 6 H 1.48504 * 109.46902 * 152.64983 * 3 2 1 7 7 C 1.37867 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99814 * 355.15313 * 7 2 1 9 9 C 1.50697 * 120.00459 * 175.15833 * 7 2 1 10 10 C 1.53001 * 115.55222 * 89.37145 * 9 7 2 11 11 N 1.46498 * 109.46975 * 60.18696 * 10 9 7 12 12 C 1.34526 * 124.45632 * 266.76345 * 11 10 9 13 13 O 1.21440 * 125.71157 * 0.02562 * 12 11 10 14 14 C 1.47819 * 108.57729 * 179.97438 * 12 11 10 15 15 C 1.38563 * 134.29777 * 179.97438 * 14 12 11 16 16 C 1.38613 * 119.71996 * 180.02562 * 15 14 12 17 17 C 1.38238 * 120.45587 * 359.97438 * 16 15 14 18 18 C 1.38606 * 120.45984 * 0.02562 * 17 16 15 19 19 C 1.38562 * 119.72256 * 359.97438 * 18 17 16 20 20 C 1.34520 * 124.46188 * 86.74306 * 11 10 9 21 21 O 1.21446 * 125.70677 * 359.97438 * 20 11 10 22 22 C 1.53000 * 117.49958 * 235.04764 * 9 7 2 23 23 C 1.53002 * 117.49465 * 303.70129 * 9 7 2 24 24 H 0.96999 * 120.00066 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47018 * 300.18374 * 10 9 7 26 26 H 1.08995 * 109.47053 * 180.18766 * 10 9 7 27 27 H 1.08002 * 120.14473 * 0.04538 * 15 14 12 28 28 H 1.07994 * 119.77135 * 180.27437 * 16 15 14 29 29 H 1.08004 * 119.76530 * 179.97438 * 17 16 15 30 30 H 1.07999 * 120.13861 * 180.02562 * 18 17 16 31 31 H 1.09001 * 117.49887 * 215.00059 * 22 9 7 32 32 H 1.08997 * 117.50264 * 0.02562 * 22 9 7 33 33 H 1.08995 * 117.50265 * 359.97438 * 23 9 7 34 34 H 1.09009 * 117.49673 * 144.96987 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4405 2.0790 -1.3985 5 1 1.4757 2.6358 0.7555 6 1 3.5735 1.4248 0.6433 7 6 2.0046 -1.1939 -0.0005 8 1 1.4675 -2.1277 0.0781 9 6 3.5075 -1.1962 -0.1107 10 6 4.2666 -1.1244 1.2158 11 7 3.9154 -2.2817 2.0426 12 6 2.9356 -2.2894 2.9644 13 8 2.2129 -1.3527 3.2385 14 6 2.8851 -3.6291 3.5868 15 6 2.1017 -4.2099 4.5712 16 6 2.3201 -5.5299 4.9335 17 6 3.3132 -6.2700 4.3194 18 6 4.1045 -5.7022 3.3332 19 6 3.8976 -4.3837 2.9607 20 6 4.5299 -3.4767 1.9797 21 8 5.4493 -3.7628 1.2396 22 6 4.1320 -2.0205 -1.2382 23 6 4.1283 -0.4920 -1.3189 24 1 -0.4850 0.8400 0.0004 25 1 3.9961 -0.2078 1.7401 26 1 5.3390 -1.1288 1.0214 27 1 1.3239 -3.6368 5.0539 28 1 1.7071 -5.9848 5.6975 29 1 3.4740 -7.2974 4.6108 30 1 4.8786 -6.2852 2.8566 31 1 5.0835 -2.5118 -1.0350 32 1 3.4558 -2.5609 -1.9007 33 1 3.4497 -0.0275 -2.0342 34 1 5.0773 0.0228 -1.1685 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259608.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:01 Heat of formation + Delta-G solvation = -6.239255 kcal Electronic energy + Delta-G solvation = -20705.476663 eV Core-core repulsion = 17569.522202 eV Total energy + Delta-G solvation = -3135.954460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.21865 -39.61396 -39.55263 -38.52487 -36.61921 -34.27276 -32.81535 -32.04958 -28.86634 -27.56034 -26.04062 -24.13332 -23.38808 -23.01689 -21.37751 -20.65177 -18.76831 -18.59513 -17.97981 -17.56433 -17.04716 -16.74457 -16.26900 -15.67948 -15.37797 -15.26327 -14.99858 -14.97052 -14.84988 -14.59726 -13.80080 -13.61950 -13.17620 -13.13314 -12.69335 -12.60457 -12.31699 -12.14493 -11.81605 -11.51441 -11.28535 -10.97406 -10.94281 -10.49321 -10.42814 -10.15353 -10.08796 -8.32506 -6.38941 -0.89114 0.06494 1.10616 1.29164 1.34187 1.40528 1.46581 2.05388 2.33777 2.65739 2.76168 3.04451 3.10665 3.36097 3.68501 3.93568 4.10732 4.11206 4.24144 4.25610 4.30080 4.31293 4.47135 4.54900 4.76538 4.78589 4.90061 4.95292 5.05480 5.19651 5.27027 5.30787 5.39282 5.61867 5.75969 5.82890 6.20628 6.27612 6.65153 6.73354 7.30720 8.84149 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.007214 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.590967 B = 3880.209019 C = 4568.569271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.029 3.971 3 Si 0.937 3.063 4 H -0.261 1.261 5 H -0.300 1.300 6 H -0.234 1.234 7 C -0.477 4.477 8 H 0.017 0.983 9 C -0.050 4.050 10 C 0.145 3.855 11 N -0.564 5.564 12 C 0.560 3.440 13 O -0.492 6.492 14 C -0.160 4.160 15 C -0.056 4.056 16 C -0.081 4.081 17 C -0.082 4.082 18 C -0.044 4.044 19 C -0.159 4.159 20 C 0.570 3.430 21 O -0.494 6.494 22 C -0.161 4.161 23 C -0.176 4.176 24 H 0.264 0.736 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.144 0.856 28 H 0.183 0.817 29 H 0.188 0.812 30 H 0.161 0.839 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.898 -12.268 10.847 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.169 4.169 3 Si 0.762 3.238 4 H -0.186 1.186 5 H -0.228 1.228 6 H -0.157 1.157 7 C -0.514 4.514 8 H 0.035 0.965 9 C -0.052 4.052 10 C 0.025 3.975 11 N -0.303 5.303 12 C 0.351 3.649 13 O -0.365 6.365 14 C -0.164 4.164 15 C -0.075 4.075 16 C -0.099 4.099 17 C -0.100 4.100 18 C -0.062 4.062 19 C -0.163 4.163 20 C 0.362 3.638 21 O -0.368 6.368 22 C -0.198 4.198 23 C -0.213 4.213 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.117 0.883 27 H 0.162 0.838 28 H 0.201 0.799 29 H 0.206 0.794 30 H 0.178 0.822 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.872 -11.719 10.545 18.601 hybrid contribution -0.508 1.388 -0.512 1.565 sum 9.363 -10.331 10.033 17.177 Atomic orbital electron populations 1.70036 1.08434 1.27931 1.52045 1.25768 0.95190 1.02844 0.93145 0.85921 0.80302 0.78576 0.79040 1.18593 1.22778 1.15677 1.20060 0.88719 0.92132 1.50478 0.96515 1.19649 0.93427 1.04470 0.87624 1.21510 0.98988 0.85998 0.90999 1.46442 1.33265 1.14468 1.36124 1.18977 0.78484 0.88770 0.78689 1.90761 1.40723 1.42105 1.62904 1.20667 1.01030 0.93245 1.01457 1.21149 0.96706 0.96430 0.93217 1.21936 0.97274 0.91449 0.99246 1.21978 0.92848 1.02121 0.93046 1.21194 0.99080 0.90361 0.95607 1.20640 0.99205 0.97171 0.99279 1.18774 0.81132 0.81873 0.82058 1.90689 1.27408 1.78235 1.40510 1.22816 1.01372 0.93148 1.02478 1.23020 1.02023 0.95208 1.01068 0.92696 0.90405 0.88319 0.83843 0.79938 0.79443 0.82186 0.88357 0.90891 0.90128 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.77 13.96 21.44 0.30 -61.47 16 2 C 0.03 1.73 5.47 84.65 0.46 2.19 16 3 Si 0.94 46.29 24.91 68.60 1.71 48.00 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 6 H -0.23 -10.40 5.66 99.48 0.56 -9.83 16 7 C -0.48 -28.30 8.86 25.60 0.23 -28.08 16 8 H 0.02 1.14 8.06 -2.91 -0.02 1.11 16 9 C -0.05 -2.40 1.06 -52.93 -0.06 -2.46 16 10 C 0.15 6.30 5.32 86.38 0.46 6.76 16 11 N -0.56 -24.01 2.49 -762.98 -1.90 -25.91 16 12 C 0.56 24.63 7.61 86.82 0.66 25.29 16 13 O -0.49 -25.45 17.63 -3.53 -0.06 -25.51 16 14 C -0.16 -5.35 6.41 -20.00 -0.13 -5.48 16 15 C -0.06 -1.35 10.09 22.44 0.23 -1.13 16 16 C -0.08 -1.14 10.04 22.36 0.22 -0.91 16 17 C -0.08 -1.01 10.04 22.36 0.22 -0.79 16 18 C -0.04 -0.87 10.09 22.43 0.23 -0.64 16 19 C -0.16 -4.87 6.41 -20.00 -0.13 -4.99 16 20 C 0.57 21.64 8.02 86.82 0.70 22.33 16 21 O -0.49 -19.43 17.31 -3.54 -0.06 -19.49 16 22 C -0.16 -6.84 9.95 30.62 0.30 -6.54 16 23 C -0.18 -7.26 7.63 30.62 0.23 -7.02 16 24 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 25 H 0.08 3.53 6.28 -2.39 -0.01 3.51 16 26 H 0.10 3.66 8.00 -2.39 -0.02 3.64 16 27 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 28 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 29 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 30 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 31 H 0.10 3.83 7.73 -2.39 -0.02 3.81 16 32 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.08 3.51 7.23 -2.39 -0.02 3.49 16 34 H 0.11 3.80 8.14 -2.38 -0.02 3.78 16 Total: -1.00 -80.87 297.27 4.60 -76.27 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.98 Total: 9.58 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 3.63 Total: -1.46 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -1.60 Total: -87.38 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -0.12 Total: -44.99 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.71 Total: 48.00 kcal Total: -80.87 4.60 -76.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259608.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.028 kcal (2) G-P(sol) polarization free energy of solvation -80.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds