Wall clock time and date at job start Mon Mar 30 2020 01:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 N 1.46500 * 109.46831 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99523 * 92.38231 * 4 3 2 6 6 H 1.07999 * 120.00196 * 34.04194 * 5 4 3 7 7 C 1.38817 * 119.99365 * 213.76950 * 5 4 3 8 8 N 1.31611 * 120.00337 * 23.26898 * 7 5 4 9 9 Si 1.86799 * 119.99562 * 203.26821 * 7 5 4 10 10 H 1.48502 * 109.46901 * 89.99994 * 9 7 5 11 11 H 1.48503 * 109.47191 * 209.99944 * 9 7 5 12 12 H 1.48497 * 109.47354 * 330.00201 * 9 7 5 13 13 C 1.46500 * 120.00183 * 272.37286 * 4 3 2 14 14 C 1.50698 * 109.47158 * 270.00172 * 13 4 3 15 15 C 1.38261 * 119.97058 * 269.72640 * 14 13 4 16 16 C 1.38199 * 120.04513 * 179.72807 * 15 14 13 17 17 C 1.38443 * 119.99026 * 0.52838 * 16 15 14 18 18 F 1.35101 * 120.03108 * 179.72794 * 17 16 15 19 19 C 1.38550 * 119.93859 * 359.74644 * 17 16 15 20 20 Cl 1.73591 * 120.02651 * 180.02562 * 19 17 16 21 21 C 1.38218 * 119.96743 * 90.00531 * 14 13 4 22 22 H 1.08995 * 109.46966 * 300.00222 * 1 2 3 23 23 H 1.09006 * 109.47010 * 59.99673 * 1 2 3 24 24 H 1.09005 * 109.47223 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47040 * 240.00234 * 2 1 3 26 26 H 1.09000 * 109.46596 * 120.00297 * 2 1 3 27 27 H 1.09001 * 109.46942 * 60.00174 * 3 2 1 28 28 H 1.08998 * 109.47256 * 300.00377 * 3 2 1 29 29 H 0.96996 * 120.00177 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.46897 * 30.00475 * 13 4 3 31 31 H 1.08997 * 109.46733 * 150.00589 * 13 4 3 32 32 H 1.08000 * 119.97929 * 0.02562 * 15 14 13 33 33 H 1.08001 * 120.00404 * 180.25160 * 16 15 14 34 34 H 1.07998 * 119.99406 * 359.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1901 1.4915 -1.1841 6 1 3.7893 2.0500 -2.0170 7 6 5.4026 0.8279 -1.3125 8 7 5.6838 -0.1877 -0.5241 9 14 6.6352 1.3765 -2.6045 10 1 7.5402 2.3998 -2.0223 11 1 7.4336 0.2081 -3.0546 12 1 5.9116 1.9577 -3.7637 13 6 4.2370 1.3900 1.2686 14 6 4.4881 2.7916 1.7619 15 6 5.6433 3.4566 1.3947 16 6 5.8724 4.7441 1.8417 17 6 4.9499 5.3646 2.6667 18 9 5.1757 6.6212 3.1086 19 6 3.7951 4.6957 3.0390 20 17 2.6366 5.4719 4.0728 21 6 3.5659 3.4091 2.5859 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9564 -0.8899 29 1 6.5309 -0.6516 -0.6141 30 1 3.6476 0.8452 2.0061 31 1 5.1895 0.8820 1.1174 32 1 6.3649 2.9714 0.7542 33 1 6.7731 5.2644 1.5512 34 1 2.6658 2.8871 2.8753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:38 Heat of formation + Delta-G solvation = -21.422445 kcal Electronic energy + Delta-G solvation = -18636.951659 eV Core-core repulsion = 15510.278746 eV Total energy + Delta-G solvation = -3126.672913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.62298 -38.84925 -36.48290 -35.90372 -33.02482 -31.47604 -30.50113 -29.86036 -25.76692 -25.59100 -22.71205 -22.34437 -21.08982 -19.89682 -17.45559 -16.91430 -16.17420 -15.47388 -15.41375 -14.80845 -14.36086 -14.04910 -13.71266 -13.55682 -13.32011 -13.06580 -12.73863 -12.56280 -12.05170 -11.46681 -11.33584 -11.16233 -11.11210 -10.99740 -10.84158 -10.67451 -10.48799 -10.34758 -10.09169 -10.03206 -9.73949 -8.65003 -8.60173 -8.09629 -6.78755 -5.94242 -3.45284 1.41975 1.51691 2.26692 3.26809 3.36773 3.38084 3.90273 4.38408 4.44573 5.01451 5.15508 5.38341 5.46900 5.60992 5.68321 5.71503 5.79608 5.93923 6.08559 6.21880 6.29007 6.39924 6.43468 6.52607 6.55059 6.60600 6.68691 6.98833 7.09661 7.17812 7.21369 7.51122 7.70674 8.35259 9.02246 9.65755 10.21911 11.06423 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.007107 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.858246 B = 3938.675142 C = 5410.171094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.147 3.853 4 N -0.575 5.575 5 C -0.253 4.253 6 H 0.064 0.936 7 C 0.010 3.990 8 N -0.882 5.882 9 Si 0.892 3.108 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.277 1.277 13 C 0.169 3.831 14 C -0.066 4.066 15 C -0.067 4.067 16 C -0.145 4.145 17 C 0.079 3.921 18 F -0.140 7.140 19 C -0.073 4.073 20 Cl -0.073 7.073 21 C -0.088 4.088 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.044 0.956 29 H 0.257 0.743 30 H 0.039 0.961 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.327 5.617 6.035 8.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.022 3.978 4 N -0.293 5.293 5 C -0.383 4.383 6 H 0.081 0.919 7 C -0.190 4.190 8 N -0.524 5.524 9 Si 0.721 3.279 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.202 1.202 13 C 0.043 3.957 14 C -0.070 4.070 15 C -0.086 4.086 16 C -0.164 4.164 17 C 0.059 3.941 18 F -0.119 7.119 19 C -0.100 4.100 20 Cl -0.044 7.044 21 C -0.107 4.107 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.303 5.586 6.102 8.908 hybrid contribution 0.606 0.634 -0.521 1.020 sum -2.697 6.220 5.582 8.782 Atomic orbital electron populations 1.21758 0.97686 1.00385 1.00750 1.22071 0.93141 1.00618 1.02150 1.20970 0.84810 0.93591 0.98470 1.43821 0.99523 1.84290 1.01666 1.19127 1.02867 1.24942 0.91342 0.91852 1.25053 1.00609 0.95105 0.98249 1.69957 1.23637 1.18205 1.40648 0.86455 0.81649 0.78036 0.81760 1.21120 1.21648 1.20202 1.20144 1.01453 0.87688 0.86439 1.21419 0.91837 1.01304 0.92448 1.21144 0.97630 0.92734 0.97139 1.21111 0.99448 0.96582 0.99283 1.17290 0.95431 0.80764 1.00633 1.91467 1.94697 1.37605 1.88083 1.20949 0.92238 0.95564 1.01286 1.98338 1.58750 1.81100 1.66245 1.20922 1.00178 0.91774 0.97840 0.93625 0.93402 0.93817 0.91803 0.92992 0.94879 0.93709 0.93296 0.94281 0.86875 0.84507 0.84749 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.81 16 2 C -0.14 -2.58 6.26 -26.73 -0.17 -2.75 16 3 C 0.15 2.90 5.67 -4.04 -0.02 2.88 16 4 N -0.57 -13.00 2.44 -174.61 -0.43 -13.42 16 5 C -0.25 -6.35 9.47 -15.06 -0.14 -6.49 16 6 H 0.06 1.63 7.93 -52.49 -0.42 1.21 16 7 C 0.01 0.26 4.95 -17.43 -0.09 0.17 16 8 N -0.88 -23.12 11.32 55.49 0.63 -22.49 16 9 Si 0.89 20.09 29.61 -169.99 -5.03 15.05 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 C 0.17 3.57 5.43 -5.19 -0.03 3.54 16 14 C -0.07 -1.24 5.46 -104.62 -0.57 -1.81 16 15 C -0.07 -1.23 9.70 -39.59 -0.38 -1.61 16 16 C -0.15 -2.37 10.03 -39.52 -0.40 -2.77 16 17 C 0.08 1.33 7.28 -39.39 -0.29 1.04 16 18 F -0.14 -2.30 16.84 2.25 0.04 -2.26 16 19 C -0.07 -1.21 6.33 -39.44 -0.25 -1.46 16 20 Cl -0.07 -1.09 28.62 -51.86 -1.48 -2.57 16 21 C -0.09 -1.49 9.48 -39.56 -0.38 -1.86 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.03 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.04 0.89 8.02 -51.93 -0.42 0.47 16 29 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 30 H 0.04 0.78 8.01 -51.93 -0.42 0.36 16 31 H 0.11 2.69 5.25 -51.93 -0.27 2.42 16 32 H 0.14 2.61 8.06 -52.49 -0.42 2.18 16 33 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 34 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 310.60 15.07 4.68 4.68 Total: -1.00 -25.36 310.60 -8.40 -33.76 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.46 Total: 0.20 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -2.34 Total: -12.94 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.20 Total: -35.91 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.05 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.48 Total: -2.57 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -25.36 -8.40 -33.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.337 kcal (2) G-P(sol) polarization free energy of solvation -25.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds