Wall clock time and date at job start Mon Mar 30 2020 01:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 N 1.46500 * 109.46831 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99523 * 92.38231 * 4 3 2 6 6 H 1.07999 * 120.00196 * 34.04194 * 5 4 3 7 7 C 1.38817 * 119.99365 * 213.76950 * 5 4 3 8 8 N 1.31611 * 120.00337 * 23.26898 * 7 5 4 9 9 Si 1.86799 * 119.99562 * 203.26821 * 7 5 4 10 10 H 1.48502 * 109.46901 * 89.99994 * 9 7 5 11 11 H 1.48503 * 109.47191 * 209.99944 * 9 7 5 12 12 H 1.48497 * 109.47354 * 330.00201 * 9 7 5 13 13 C 1.46500 * 120.00183 * 272.37286 * 4 3 2 14 14 C 1.50698 * 109.47158 * 270.00172 * 13 4 3 15 15 C 1.38261 * 119.97058 * 269.72640 * 14 13 4 16 16 C 1.38199 * 120.04513 * 179.72807 * 15 14 13 17 17 C 1.38443 * 119.99026 * 0.52838 * 16 15 14 18 18 F 1.35101 * 120.03108 * 179.72794 * 17 16 15 19 19 C 1.38550 * 119.93859 * 359.74644 * 17 16 15 20 20 Cl 1.73591 * 120.02651 * 180.02562 * 19 17 16 21 21 C 1.38218 * 119.96743 * 90.00531 * 14 13 4 22 22 H 1.08995 * 109.46966 * 300.00222 * 1 2 3 23 23 H 1.09006 * 109.47010 * 59.99673 * 1 2 3 24 24 H 1.09005 * 109.47223 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47040 * 240.00234 * 2 1 3 26 26 H 1.09000 * 109.46596 * 120.00297 * 2 1 3 27 27 H 1.09001 * 109.46942 * 60.00174 * 3 2 1 28 28 H 1.08998 * 109.47256 * 300.00377 * 3 2 1 29 29 H 0.96996 * 120.00177 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.46897 * 30.00475 * 13 4 3 31 31 H 1.08997 * 109.46733 * 150.00589 * 13 4 3 32 32 H 1.08000 * 119.97929 * 0.02562 * 15 14 13 33 33 H 1.08001 * 120.00404 * 180.25160 * 16 15 14 34 34 H 1.07998 * 119.99406 * 359.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1901 1.4915 -1.1841 6 1 3.7893 2.0500 -2.0170 7 6 5.4026 0.8279 -1.3125 8 7 5.6838 -0.1877 -0.5241 9 14 6.6352 1.3765 -2.6045 10 1 7.5402 2.3998 -2.0223 11 1 7.4336 0.2081 -3.0546 12 1 5.9116 1.9577 -3.7637 13 6 4.2370 1.3900 1.2686 14 6 4.4881 2.7916 1.7619 15 6 5.6433 3.4566 1.3947 16 6 5.8724 4.7441 1.8417 17 6 4.9499 5.3646 2.6667 18 9 5.1757 6.6212 3.1086 19 6 3.7951 4.6957 3.0390 20 17 2.6366 5.4719 4.0728 21 6 3.5659 3.4091 2.5859 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9564 -0.8899 29 1 6.5309 -0.6516 -0.6141 30 1 3.6476 0.8452 2.0061 31 1 5.1895 0.8820 1.1174 32 1 6.3649 2.9714 0.7542 33 1 6.7731 5.2644 1.5512 34 1 2.6658 2.8871 2.8753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:37 Heat of formation + Delta-G solvation = -31.128251 kcal Electronic energy + Delta-G solvation = -18637.372534 eV Core-core repulsion = 15510.278746 eV Total energy + Delta-G solvation = -3127.093788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.94699 -40.26004 -37.92550 -37.35758 -34.62015 -33.12928 -31.88206 -31.39322 -27.35274 -27.24202 -24.06991 -23.92607 -22.53754 -21.48454 -18.92272 -18.58161 -17.57359 -16.93422 -16.75579 -16.54600 -15.92163 -15.69380 -15.17329 -14.92936 -14.85611 -14.42552 -14.15659 -13.88603 -13.57520 -13.19566 -12.73913 -12.71443 -12.53120 -12.50028 -12.44318 -12.06752 -12.00965 -11.86100 -11.81533 -11.72684 -11.29472 -10.52647 -9.93425 -9.49835 -8.61435 -7.83314 -5.37918 0.04095 0.16552 0.97702 1.46387 1.51584 1.57407 2.46692 2.57408 3.10467 3.24960 3.70651 3.81261 4.01159 4.21791 4.28889 4.32468 4.46322 4.57136 4.71519 4.84012 4.88785 4.93499 5.01508 5.01995 5.17636 5.22986 5.30065 5.48964 5.56680 5.63188 5.75974 5.78404 5.86175 6.47666 7.16297 7.85523 8.36858 9.14094 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.007107 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.858246 B = 3938.675142 C = 5410.171094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C 0.145 3.855 4 N -0.589 5.589 5 C -0.259 4.259 6 H 0.053 0.947 7 C -0.025 4.025 8 N -0.908 5.908 9 Si 0.941 3.059 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.277 1.277 13 C 0.175 3.825 14 C -0.077 4.077 15 C -0.078 4.078 16 C -0.137 4.137 17 C 0.080 3.920 18 F -0.136 7.136 19 C -0.075 4.075 20 Cl -0.054 7.054 21 C -0.082 4.082 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.031 0.969 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.253 0.747 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.160 0.840 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 7.008 6.802 10.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C 0.020 3.980 4 N -0.308 5.308 5 C -0.390 4.390 6 H 0.070 0.930 7 C -0.223 4.223 8 N -0.552 5.552 9 Si 0.769 3.231 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.202 1.202 13 C 0.049 3.951 14 C -0.081 4.081 15 C -0.098 4.098 16 C -0.155 4.155 17 C 0.059 3.941 18 F -0.115 7.115 19 C -0.102 4.102 20 Cl -0.025 7.025 21 C -0.101 4.101 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.141 0.859 33 H 0.177 0.823 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.147 7.000 6.884 10.658 hybrid contribution 0.813 0.266 -0.678 1.092 sum -3.334 7.266 6.206 10.121 Atomic orbital electron populations 1.21669 0.94381 1.01636 1.01944 1.21929 0.95985 0.99238 0.99996 1.21077 0.83388 0.94393 0.99144 1.43994 1.00696 1.84696 1.01431 1.19198 1.03304 1.24365 0.92095 0.92976 1.25520 1.01750 0.95216 0.99833 1.70062 1.23710 1.19248 1.42169 0.85691 0.79956 0.77394 0.80023 1.20441 1.22314 1.20187 1.19926 0.99987 0.89073 0.86089 1.21144 0.92931 1.00153 0.93825 1.21071 0.97454 0.93645 0.97589 1.21254 1.00176 0.95710 0.98401 1.17384 0.95458 0.80862 1.00373 1.91481 1.94667 1.37327 1.87983 1.21000 0.92570 0.95443 1.01193 1.98347 1.57980 1.80663 1.65531 1.20938 1.00104 0.91963 0.97108 0.91854 0.92733 0.92598 0.95039 0.94034 0.92871 0.94149 0.93730 0.93733 0.89652 0.85939 0.82289 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.91 71.98 0.71 -3.07 16 2 C -0.13 -4.81 6.26 30.59 0.19 -4.62 16 3 C 0.15 5.62 5.67 86.38 0.49 6.11 16 4 N -0.59 -26.82 2.44 -706.35 -1.72 -28.54 16 5 C -0.26 -13.21 9.47 84.03 0.80 -12.41 16 6 H 0.05 2.73 7.93 -2.91 -0.02 2.70 16 7 C -0.03 -1.29 4.95 84.86 0.42 -0.88 16 8 N -0.91 -48.82 11.32 21.65 0.25 -48.58 16 9 Si 0.94 41.76 29.61 68.60 2.03 43.79 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 13 C 0.18 7.46 5.43 85.63 0.46 7.92 16 14 C -0.08 -2.84 5.46 -19.86 -0.11 -2.95 16 15 C -0.08 -2.81 9.70 22.27 0.22 -2.60 16 16 C -0.14 -4.20 10.03 22.31 0.22 -3.98 16 17 C 0.08 2.47 7.28 22.39 0.16 2.64 16 18 F -0.14 -4.10 16.84 44.97 0.76 -3.35 16 19 C -0.07 -2.29 6.33 22.36 0.14 -2.15 16 20 Cl -0.05 -1.46 28.62 -2.72 -0.08 -1.54 16 21 C -0.08 -2.62 9.48 22.28 0.21 -2.41 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.82 8.09 -2.39 -0.02 1.80 16 28 H 0.04 1.58 8.02 -2.39 -0.02 1.56 16 29 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 30 H 0.04 1.78 8.01 -2.39 -0.02 1.77 16 31 H 0.09 4.18 5.25 -2.39 -0.01 4.17 16 32 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 33 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -53.66 310.60 6.25 -47.41 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.09 Total: 9.20 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 3.92 Total: -18.41 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -1.48 Total: -77.11 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.76 Total: -3.35 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -53.66 6.25 -47.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.287 kcal (2) G-P(sol) polarization free energy of solvation -53.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds