Wall clock time and date at job start Mon Mar 30 2020 01:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47332 * 2 1 4 4 N 1.46494 * 109.47384 * 183.75884 * 3 2 1 5 5 C 1.36943 * 119.99456 * 96.26196 * 4 3 2 6 6 H 1.07997 * 119.99686 * 176.77205 * 5 4 3 7 7 C 1.38807 * 120.00142 * 356.78303 * 5 4 3 8 8 N 1.31627 * 119.99906 * 325.45468 * 7 5 4 9 9 Si 1.86804 * 120.00419 * 145.45511 * 7 5 4 10 10 H 1.48504 * 109.46751 * 94.98320 * 9 7 5 11 11 H 1.48499 * 109.47231 * 214.98449 * 9 7 5 12 12 H 1.48500 * 109.46898 * 334.98489 * 9 7 5 13 13 C 1.46493 * 120.00677 * 276.26632 * 4 3 2 14 14 C 1.50700 * 109.47468 * 265.15466 * 13 4 3 15 15 C 1.38209 * 120.00678 * 258.41579 * 14 13 4 16 16 C 1.38325 * 120.01288 * 179.76751 * 15 14 13 17 17 Cl 1.73598 * 119.99034 * 180.25226 * 16 15 14 18 18 C 1.38372 * 120.02591 * 0.50257 * 16 15 14 19 19 C 1.38175 * 120.01101 * 359.75164 * 18 16 15 20 20 C 1.38439 * 120.00547 * 78.68708 * 14 13 4 21 21 F 1.35093 * 120.01001 * 0.02562 * 20 14 13 22 22 H 1.08999 * 109.47352 * 59.99797 * 1 2 3 23 23 H 1.09006 * 109.47232 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47256 * 299.99322 * 1 2 3 25 25 H 1.09006 * 109.46783 * 240.00164 * 2 1 3 26 26 H 1.08999 * 109.47104 * 120.01132 * 2 1 3 27 27 H 1.09008 * 109.46502 * 63.76572 * 3 2 1 28 28 H 1.08994 * 109.47239 * 303.76952 * 3 2 1 29 29 H 0.97000 * 120.00105 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.46940 * 25.15687 * 13 4 3 31 31 H 1.09004 * 109.47253 * 145.14844 * 13 4 3 32 32 H 1.08009 * 119.99093 * 0.02562 * 15 14 13 33 33 H 1.08005 * 120.00004 * 179.72162 * 18 16 15 34 34 H 1.07995 * 120.00661 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5022 1.4434 -0.0905 5 6 4.1127 1.5990 -1.3064 6 1 5.1897 1.6520 -1.3670 7 6 3.3473 1.6887 -2.4610 8 7 2.2299 1.0009 -2.5649 9 14 3.9031 2.7855 -3.8673 10 1 4.6602 1.9767 -4.8562 11 1 2.7154 3.3870 -4.5251 12 1 4.7756 3.8645 -3.3384 13 6 4.3112 1.2779 1.1194 14 6 4.6993 2.6326 1.6536 15 6 5.9693 3.1277 1.4254 16 6 6.3240 4.3732 1.9114 17 17 7.9173 4.9973 1.6189 18 6 5.4111 5.1197 2.6353 19 6 4.1428 4.6235 2.8685 20 6 3.7854 3.3790 2.3777 21 9 2.5458 2.8929 2.6061 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5140 0.8899 27 1 1.7328 1.9363 0.9219 28 1 1.6227 1.9754 -0.8542 29 1 1.6952 1.0633 -3.3718 30 1 3.7332 0.7424 1.8725 31 1 5.2106 0.7103 0.8804 32 1 6.6836 2.5437 0.8638 33 1 5.6900 6.0903 3.0185 34 1 3.4304 5.2060 3.4338 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:45 Heat of formation + Delta-G solvation = -21.043108 kcal Electronic energy + Delta-G solvation = -18970.107609 eV Core-core repulsion = 15843.451145 eV Total energy + Delta-G solvation = -3126.656464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.85885 -40.15898 -38.04073 -37.29318 -34.11454 -33.74033 -31.77553 -31.05011 -27.48116 -27.33084 -24.09582 -23.73909 -22.52780 -21.48042 -18.83765 -18.38109 -17.55578 -17.23416 -17.04681 -16.41740 -15.66619 -15.38466 -15.27286 -14.85486 -14.62694 -14.41525 -14.13413 -13.87087 -13.56194 -13.48740 -12.82903 -12.66528 -12.61605 -12.42170 -12.23180 -12.07445 -11.96221 -11.89221 -11.67655 -11.65093 -11.03913 -10.25665 -9.97189 -9.46110 -8.88982 -7.88902 -5.04544 0.03706 0.21809 1.12420 1.43500 1.50686 1.58423 2.44102 2.59707 3.20652 3.34397 3.73548 3.78183 3.86052 4.15237 4.26451 4.46918 4.50222 4.61941 4.81378 4.87671 4.89858 4.91441 4.99358 5.11337 5.18333 5.20551 5.36738 5.44188 5.48465 5.67152 5.80027 5.83840 6.12126 6.30863 7.19086 7.91367 8.33558 9.16011 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.007379 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.309496 B = 3793.591089 C = 5029.341587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.117 4.117 3 C 0.167 3.833 4 N -0.600 5.600 5 C -0.264 4.264 6 H 0.073 0.927 7 C -0.033 4.033 8 N -0.894 5.894 9 Si 0.925 3.075 10 H -0.291 1.291 11 H -0.296 1.296 12 H -0.281 1.281 13 C 0.184 3.816 14 C -0.117 4.117 15 C -0.081 4.081 16 C -0.051 4.051 17 Cl -0.065 7.065 18 C -0.087 4.087 19 C -0.139 4.139 20 C 0.090 3.910 21 F -0.142 7.142 22 H 0.038 0.962 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.028 0.972 27 H 0.031 0.969 28 H 0.051 0.949 29 H 0.247 0.753 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.137 0.863 33 H 0.169 0.831 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 6.463 11.938 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 C 0.042 3.958 4 N -0.320 5.320 5 C -0.393 4.393 6 H 0.090 0.910 7 C -0.230 4.230 8 N -0.539 5.539 9 Si 0.754 3.246 10 H -0.218 1.218 11 H -0.222 1.222 12 H -0.207 1.207 13 C 0.058 3.942 14 C -0.121 4.121 15 C -0.101 4.101 16 C -0.078 4.078 17 Cl -0.036 7.036 18 C -0.106 4.106 19 C -0.158 4.158 20 C 0.070 3.930 21 F -0.120 7.120 22 H 0.057 0.943 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.155 0.845 33 H 0.187 0.813 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.651 6.454 11.773 14.209 hybrid contribution 0.072 0.261 -1.238 1.268 sum 4.722 6.715 10.535 13.356 Atomic orbital electron populations 1.21509 0.95976 1.00655 1.00409 1.21805 0.95238 0.99304 0.99348 1.20888 0.82098 0.95077 0.97746 1.44296 1.01802 1.84051 1.01899 1.19290 0.91718 1.43663 0.84628 0.90959 1.25100 0.97942 1.01194 0.98760 1.70416 1.17954 1.38041 1.27454 0.85908 0.76941 0.81109 0.80626 1.21833 1.22219 1.20664 1.19708 0.95680 0.90341 0.88502 1.21030 0.93207 1.00903 0.96988 1.20863 0.95794 0.94736 0.98689 1.21026 0.88155 0.95483 1.03107 1.98353 1.23298 1.86807 1.95119 1.21094 0.91258 1.00765 0.97466 1.21311 0.98112 0.93991 1.02377 1.17900 0.80239 0.94570 1.00244 1.91428 1.39748 1.88125 1.92742 0.94316 0.92895 0.93019 0.92607 0.95372 0.95131 0.93047 0.94345 0.92124 0.92063 0.84511 0.81350 0.81542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.91 71.98 0.71 -4.10 16 2 C -0.12 -5.24 5.78 30.59 0.18 -5.06 16 3 C 0.17 7.96 4.87 86.38 0.42 8.38 16 4 N -0.60 -28.90 2.53 -706.39 -1.78 -30.68 16 5 C -0.26 -14.01 9.63 84.03 0.81 -13.20 16 6 H 0.07 3.78 8.02 -2.91 -0.02 3.75 16 7 C -0.03 -1.80 4.71 84.86 0.40 -1.41 16 8 N -0.89 -49.99 9.30 21.65 0.20 -49.79 16 9 Si 0.93 44.36 29.67 68.60 2.04 46.40 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 11 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 C 0.18 7.32 5.54 85.63 0.47 7.79 16 14 C -0.12 -4.12 5.44 -19.82 -0.11 -4.23 16 15 C -0.08 -2.58 9.45 22.28 0.21 -2.37 16 16 C -0.05 -1.38 6.32 22.32 0.14 -1.24 16 17 Cl -0.06 -1.56 28.95 -2.72 -0.08 -1.64 16 18 C -0.09 -2.03 9.83 22.29 0.22 -1.81 16 19 C -0.14 -3.52 10.03 22.31 0.22 -3.30 16 20 C 0.09 2.97 7.25 22.37 0.16 3.13 16 21 F -0.14 -5.00 14.39 44.97 0.65 -4.36 16 22 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 2.90 6.71 -2.38 -0.02 2.88 16 26 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.03 1.37 5.70 -2.38 -0.01 1.36 16 28 H 0.05 2.79 5.80 -2.39 -0.01 2.77 16 29 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.06 2.30 7.88 -2.39 -0.02 2.28 16 31 H 0.06 2.35 7.92 -2.39 -0.02 2.33 16 32 H 0.14 4.24 8.03 -2.91 -0.02 4.22 16 33 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -58.46 301.93 5.96 -52.50 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 1.10 Total: 5.01 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 3.84 Total: -17.43 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -1.58 Total: -80.47 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.65 Total: -4.36 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.04 Total: 46.40 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -58.46 5.96 -52.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.455 kcal (2) G-P(sol) polarization free energy of solvation -58.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds