Wall clock time and date at job start Mon Mar 30 2020 01:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47321 * 2 1 4 4 N 1.46504 * 109.47365 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00047 * 89.99404 * 4 3 2 6 6 H 1.08003 * 119.99593 * 346.25031 * 5 4 3 7 7 C 1.38811 * 119.99821 * 165.97710 * 5 4 3 8 8 N 1.31620 * 120.00033 * 37.08810 * 7 5 4 9 9 Si 1.86798 * 120.00004 * 217.08190 * 7 5 4 10 10 H 1.48501 * 109.47038 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46993 * 120.00102 * 9 7 5 12 12 H 1.48499 * 109.47417 * 240.00119 * 9 7 5 13 13 C 1.46500 * 119.99606 * 269.99764 * 4 3 2 14 14 C 1.50703 * 109.46965 * 263.26841 * 13 4 3 15 15 C 1.38230 * 120.00646 * 244.29152 * 14 13 4 16 16 C 1.38228 * 120.05159 * 179.76982 * 15 14 13 17 17 C 1.38257 * 120.05287 * 0.50716 * 16 15 14 18 18 C 1.38274 * 120.01611 * 359.75091 * 17 16 15 19 19 Cl 1.73608 * 120.02622 * 179.97438 * 18 17 16 20 20 C 1.38404 * 120.00258 * 64.57002 * 14 13 4 21 21 F 1.35098 * 120.03274 * 359.97438 * 20 14 13 22 22 H 1.08997 * 109.47079 * 300.00924 * 1 2 3 23 23 H 1.09004 * 109.46688 * 60.00190 * 1 2 3 24 24 H 1.08998 * 109.46987 * 180.02562 * 1 2 3 25 25 H 1.08990 * 109.47250 * 239.99438 * 2 1 3 26 26 H 1.09003 * 109.46759 * 119.99263 * 2 1 3 27 27 H 1.08997 * 109.47799 * 59.99517 * 3 2 1 28 28 H 1.09004 * 109.47084 * 299.99567 * 3 2 1 29 29 H 0.96993 * 119.99987 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47623 * 23.27231 * 13 4 3 31 31 H 1.09007 * 109.46766 * 143.27652 * 13 4 3 32 32 H 1.08007 * 119.97878 * 0.02562 * 15 14 13 33 33 H 1.07990 * 119.97123 * 180.25803 * 16 15 14 34 34 H 1.08001 * 119.99210 * 179.76338 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1903 1.4422 -1.1850 6 1 3.6738 1.2196 -2.1071 7 6 5.5474 1.7335 -1.2024 8 7 6.3229 1.3151 -0.2246 9 14 6.2731 2.7191 -2.6135 10 1 5.1988 3.0681 -3.5775 11 1 6.8860 3.9639 -2.0840 12 1 7.3114 1.9095 -3.3003 13 6 4.2370 1.4427 1.2697 14 6 4.6322 2.8538 1.6214 15 6 5.9684 3.2028 1.6819 16 6 6.3318 4.4981 1.9997 17 6 5.3597 5.4440 2.2678 18 6 4.0225 5.0963 2.2132 19 17 2.8017 6.2837 2.5505 20 6 3.6575 3.7991 1.8894 21 9 2.3514 3.4577 1.8355 22 1 -0.3633 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8898 26 1 1.8933 -0.5137 0.8901 27 1 1.6768 1.9564 0.8899 28 1 1.6768 1.9563 -0.8901 29 1 7.2711 1.5190 -0.2366 30 1 3.6008 1.0369 2.0562 31 1 5.1321 0.8282 1.1730 32 1 6.7290 2.4640 1.4766 33 1 7.3759 4.7703 2.0425 34 1 5.6449 6.4547 2.5197 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398470.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:48 Heat of formation + Delta-G solvation = -12.298502 kcal Electronic energy + Delta-G solvation = -19386.668129 eV Core-core repulsion = 16260.390860 eV Total energy + Delta-G solvation = -3126.277269 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.84552 -40.01952 -38.02666 -37.30299 -34.80095 -32.95437 -31.85807 -31.08681 -27.47504 -27.27433 -24.10695 -23.52563 -22.63588 -21.43370 -19.13948 -18.28405 -17.44882 -16.99474 -16.84065 -16.55599 -15.85309 -15.61585 -15.16263 -14.77760 -14.67875 -14.40317 -13.91065 -13.82279 -13.51142 -13.04367 -12.89319 -12.67778 -12.53155 -12.47573 -12.25036 -12.11465 -12.08662 -11.84039 -11.80202 -11.64742 -11.23573 -10.46442 -9.52116 -9.46899 -8.80474 -7.86623 -5.09297 0.20255 0.33997 1.05955 1.43062 1.51839 1.58327 2.51114 2.70214 3.17615 3.29970 3.76454 3.94716 4.17601 4.24870 4.38183 4.41618 4.44376 4.64456 4.77251 4.83451 4.94207 4.97470 5.09453 5.12097 5.21557 5.27493 5.41748 5.51056 5.56979 5.67434 5.76684 5.87978 6.00366 6.42218 7.19530 7.91265 8.35321 9.09300 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.010081 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.704452 B = 2776.770632 C = 4166.009424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.136 3.864 4 N -0.601 5.601 5 C -0.273 4.273 6 H 0.065 0.935 7 C -0.010 4.010 8 N -0.882 5.882 9 Si 0.911 3.089 10 H -0.288 1.288 11 H -0.287 1.287 12 H -0.294 1.294 13 C 0.176 3.824 14 C -0.098 4.098 15 C -0.072 4.072 16 C -0.131 4.131 17 C -0.097 4.097 18 C -0.092 4.092 19 Cl -0.062 7.062 20 C 0.085 3.915 21 F -0.136 7.136 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.257 0.743 30 H 0.030 0.970 31 H 0.114 0.886 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 5.486 6.668 9.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.010 3.990 4 N -0.321 5.321 5 C -0.402 4.402 6 H 0.083 0.917 7 C -0.208 4.208 8 N -0.527 5.527 9 Si 0.741 3.259 10 H -0.214 1.214 11 H -0.213 1.213 12 H -0.222 1.222 13 C 0.050 3.950 14 C -0.102 4.102 15 C -0.091 4.091 16 C -0.149 4.149 17 C -0.116 4.116 18 C -0.120 4.120 19 Cl -0.033 7.033 20 C 0.065 3.935 21 F -0.114 7.114 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.131 0.869 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.833 5.563 6.693 9.153 hybrid contribution 0.047 0.465 -1.047 1.147 sum -2.786 6.028 5.646 8.716 Atomic orbital electron populations 1.21652 0.94321 1.01891 1.01784 1.22013 0.96360 0.98870 1.00312 1.21248 0.82802 0.94937 0.99993 1.44220 1.00829 1.85232 1.01811 1.19220 0.92587 1.42145 0.86236 0.91732 1.24911 0.95944 1.01340 0.98608 1.70050 1.04237 1.43556 1.34860 0.86077 0.77733 0.80822 0.81286 1.21384 1.21295 1.22213 1.20241 0.98232 0.91076 0.85436 1.21106 0.92994 0.98957 0.97126 1.21730 0.95985 0.97484 0.93910 1.21534 1.00767 0.92534 1.00051 1.21125 0.88927 1.01541 0.99962 1.21066 0.91952 0.88936 1.10029 1.98325 1.55058 1.56109 1.93856 1.17614 0.78594 0.92740 1.04552 1.91332 1.33595 1.92431 1.94051 0.92399 0.92796 0.91892 0.94230 0.93573 0.91780 0.94868 0.93159 0.95188 0.86916 0.83394 0.82371 0.81963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.91 71.98 0.71 -3.23 16 2 C -0.14 -4.99 6.26 30.59 0.19 -4.80 16 3 C 0.14 5.73 5.19 86.38 0.45 6.17 16 4 N -0.60 -29.13 2.45 -706.33 -1.73 -30.85 16 5 C -0.27 -14.54 9.57 84.03 0.80 -13.74 16 6 H 0.06 3.52 8.04 -2.91 -0.02 3.50 16 7 C -0.01 -0.53 4.69 84.86 0.40 -0.13 16 8 N -0.88 -44.30 7.50 21.65 0.16 -44.13 16 9 Si 0.91 42.66 29.68 68.60 2.04 44.69 16 10 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 13 C 0.18 8.11 5.05 85.63 0.43 8.54 16 14 C -0.10 -4.18 5.00 -19.83 -0.10 -4.28 16 15 C -0.07 -2.81 8.52 22.27 0.19 -2.62 16 16 C -0.13 -4.11 10.04 22.27 0.22 -3.89 16 17 C -0.10 -2.92 9.83 22.28 0.22 -2.70 16 18 C -0.09 -3.23 6.33 22.36 0.14 -3.08 16 19 Cl -0.06 -1.90 28.62 -2.72 -0.08 -1.98 16 20 C 0.09 3.46 7.15 22.39 0.16 3.62 16 21 F -0.14 -5.57 13.06 44.97 0.59 -4.98 16 22 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 2.63 5.13 -2.39 -0.01 2.62 16 28 H 0.03 1.44 8.04 -2.38 -0.02 1.42 16 29 H 0.26 12.31 7.89 -92.71 -0.73 11.57 16 30 H 0.03 1.31 8.02 -2.39 -0.02 1.29 16 31 H 0.11 5.67 5.31 -2.38 -0.01 5.66 16 32 H 0.15 6.01 5.73 -2.91 -0.02 6.00 16 33 H 0.16 3.85 8.06 -2.92 -0.02 3.83 16 34 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -54.72 295.15 5.94 -48.78 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.14 Total: 8.62 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 3.82 Total: -20.14 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -1.57 Total: -74.99 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.59 Total: -4.98 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.04 Total: 44.69 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -54.72 5.94 -48.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398470.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.480 kcal (2) G-P(sol) polarization free energy of solvation -54.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds