Wall clock time and date at job start Mon Mar 30 2020 01:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46966 * 2 1 4 4 C 1.50700 * 109.47490 * 239.99813 * 2 1 3 5 5 H 1.07999 * 120.00176 * 240.00044 * 4 2 1 6 6 C 1.37876 * 119.99801 * 59.99909 * 4 2 1 7 7 N 1.31514 * 120.00007 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99876 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46668 * 60.00459 * 8 6 4 10 10 H 1.48497 * 109.46925 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47203 * 300.00299 * 8 6 4 12 12 N 1.46901 * 109.46898 * 119.99727 * 2 1 3 13 13 C 1.46895 * 110.99993 * 58.95711 * 12 2 1 14 14 C 1.46900 * 111.00077 * 294.99805 * 12 2 1 15 15 C 1.50696 * 109.47166 * 190.00137 * 14 12 2 16 16 C 1.38265 * 119.97154 * 90.00608 * 15 14 12 17 17 C 1.38190 * 120.05064 * 180.25736 * 16 15 14 18 18 C 1.38449 * 119.98550 * 359.46058 * 17 16 15 19 19 F 1.35102 * 120.03001 * 180.25476 * 18 17 16 20 20 C 1.38549 * 119.93983 * 0.56170 * 18 17 16 21 21 Cl 1.73596 * 120.02562 * 179.74195 * 20 18 17 22 22 C 1.38222 * 119.96999 * 270.02354 * 15 14 12 23 23 H 1.09000 * 109.46966 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47482 * 300.00093 * 1 2 3 25 25 H 1.09008 * 109.46853 * 60.00651 * 1 2 3 26 26 H 0.97009 * 119.99508 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47041 * 296.04539 * 13 12 2 28 28 H 1.09002 * 109.47068 * 56.04692 * 13 12 2 29 29 H 1.09002 * 109.47390 * 176.04281 * 13 12 2 30 30 H 1.09008 * 109.46672 * 70.00349 * 14 12 2 31 31 H 1.08994 * 109.47515 * 310.00400 * 14 12 2 32 32 H 1.08002 * 119.97048 * 359.97157 * 16 15 14 33 33 H 1.07997 * 120.00826 * 179.74681 * 17 16 15 34 34 H 1.08006 * 119.99208 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3227 -1.1196 -4.0079 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4201 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5569 3.6006 16 6 3.6109 -0.0755 3.9676 17 6 4.2742 -0.6246 5.0484 18 6 3.6888 -1.6501 5.7713 19 9 4.3342 -2.1841 6.8313 20 6 2.4434 -2.1325 5.4028 21 17 1.7103 -3.4228 6.3036 22 6 1.7843 -1.5849 4.3171 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7096 1.1617 -3.4845 27 1 0.4420 -2.0730 1.3347 28 1 1.8168 -2.5950 0.3319 29 1 1.9617 -2.5868 2.1059 30 1 0.5721 -0.0344 2.5726 31 1 1.9296 1.0871 2.3125 32 1 4.0658 0.7272 3.4062 33 1 5.2469 -0.2508 5.3320 34 1 0.8135 -1.9606 4.0290 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:08 Heat of formation + Delta-G solvation = -22.443930 kcal Electronic energy + Delta-G solvation = -18382.246953 eV Core-core repulsion = 15255.529745 eV Total energy + Delta-G solvation = -3126.717208 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.97189 -39.46002 -37.13236 -36.46945 -33.02997 -31.17269 -30.94194 -28.43768 -26.67870 -25.21807 -23.77398 -23.10205 -21.35588 -19.30047 -17.76736 -16.64288 -16.39806 -15.84086 -15.73210 -15.19666 -14.40299 -14.24205 -14.08745 -13.67699 -13.33650 -13.20175 -12.90793 -12.54601 -11.89346 -11.66059 -11.50750 -11.37032 -11.11894 -11.02385 -10.97168 -10.77723 -10.68431 -10.52020 -10.06649 -9.88871 -9.00197 -8.96368 -8.55152 -8.42689 -7.25461 -6.05214 -4.09213 0.97485 1.06821 1.94705 3.30477 3.34965 3.37481 3.43329 4.05304 4.38669 4.59889 4.79696 5.08773 5.12150 5.20515 5.27404 5.47211 5.80632 5.84120 5.88931 6.06874 6.09001 6.18385 6.31075 6.55802 6.61487 6.69629 6.77400 6.84528 7.04756 7.39986 7.65491 7.77015 8.03393 8.30624 8.51408 8.96091 9.56045 11.01756 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.004120 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.796803 B = 6794.000167 C = 6916.414523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.528 5.528 13 C 0.030 3.970 14 C 0.087 3.913 15 C -0.056 4.056 16 C -0.067 4.067 17 C -0.143 4.143 18 C 0.095 3.905 19 F -0.133 7.133 20 C -0.073 4.073 21 Cl -0.060 7.060 22 C -0.079 4.079 23 H 0.030 0.970 24 H 0.008 0.992 25 H 0.089 0.911 26 H 0.261 0.739 27 H 0.017 0.983 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 -2.825 14.979 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.252 5.252 13 C -0.119 4.119 14 C -0.041 4.041 15 C -0.057 4.057 16 C -0.085 4.085 17 C -0.162 4.162 18 C 0.075 3.925 19 F -0.112 7.112 20 C -0.101 4.101 21 Cl -0.032 7.032 22 C -0.098 4.098 23 H 0.050 0.950 24 H 0.027 0.973 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.656 -2.852 14.907 15.408 hybrid contribution -0.591 -0.691 -0.563 1.069 sum 2.065 -3.542 14.344 14.919 Atomic orbital electron populations 1.22420 1.00786 0.99449 1.00614 1.19339 0.89807 0.94586 0.85725 0.94150 1.21061 1.30768 1.12577 0.89597 0.91946 1.24914 0.95169 0.95104 0.98986 1.69872 1.36935 1.22968 1.23570 0.86581 0.79253 0.79612 0.82082 1.20368 1.21386 1.20211 1.62422 1.59443 1.02021 1.01299 1.22317 0.96778 0.91117 1.01642 1.21067 0.96370 0.98217 0.88475 1.20089 0.94857 0.94824 0.95938 1.21081 0.93568 0.99319 0.94581 1.21116 1.01451 0.96701 0.96897 1.17379 0.90815 0.96468 0.87836 1.91508 1.80810 1.85153 1.53731 1.20919 0.94609 0.96245 0.98305 1.98369 1.82350 1.48368 1.74065 1.20938 1.00530 0.95679 0.92675 0.95044 0.97343 0.89267 0.92912 0.96416 0.90530 0.93775 0.94136 0.90020 0.84039 0.84030 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 8.28 37.16 0.31 -3.67 16 2 C 0.21 5.01 2.34 -68.87 -0.16 4.85 16 3 H 0.04 1.05 8.03 -51.93 -0.42 0.63 16 4 C -0.50 -13.18 7.88 -34.44 -0.27 -13.45 16 5 H 0.06 1.65 6.77 -52.49 -0.36 1.30 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -24.68 11.32 55.43 0.63 -24.05 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.53 -10.54 4.73 -237.74 -1.13 -11.67 16 13 C 0.03 0.56 8.37 60.06 0.50 1.06 16 14 C 0.09 1.41 4.56 -4.98 -0.02 1.39 16 15 C -0.06 -0.79 4.88 -104.62 -0.51 -1.30 16 16 C -0.07 -0.84 9.70 -39.59 -0.38 -1.23 16 17 C -0.14 -1.67 10.03 -39.52 -0.40 -2.06 16 18 C 0.10 1.24 7.28 -39.39 -0.29 0.95 16 19 F -0.13 -1.77 16.84 2.25 0.04 -1.73 16 20 C -0.07 -0.97 6.33 -39.44 -0.25 -1.22 16 21 Cl -0.06 -0.75 28.62 -51.86 -1.48 -2.24 16 22 C -0.08 -1.06 7.75 -39.56 -0.31 -1.37 16 23 H 0.03 0.70 6.47 -51.93 -0.34 0.37 16 24 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 25 H 0.09 2.29 6.07 -51.92 -0.32 1.97 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.02 0.32 6.51 -51.93 -0.34 -0.02 16 28 H 0.08 1.57 6.41 -51.93 -0.33 1.24 16 29 H 0.04 0.74 6.16 -51.93 -0.32 0.42 16 30 H 0.04 0.66 6.88 -51.92 -0.36 0.30 16 31 H 0.08 1.30 7.94 -51.93 -0.41 0.88 16 32 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 34 H 0.14 1.77 8.03 -52.48 -0.42 1.35 16 LS Contribution 295.51 15.07 4.45 4.45 Total: -1.00 -27.02 295.51 -8.32 -35.34 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -3.94 Total: -1.39 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -1.87 Total: -14.55 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.50 Total: -35.71 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.48 Total: -2.24 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.02 -8.32 -35.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.900 kcal (2) G-P(sol) polarization free energy of solvation -27.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds