Wall clock time and date at job start Mon Mar 30 2020 01:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46966 * 2 1 4 4 C 1.50700 * 109.47490 * 239.99813 * 2 1 3 5 5 H 1.07999 * 120.00176 * 240.00044 * 4 2 1 6 6 C 1.37876 * 119.99801 * 59.99909 * 4 2 1 7 7 N 1.31514 * 120.00007 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99876 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46668 * 60.00459 * 8 6 4 10 10 H 1.48497 * 109.46925 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47203 * 300.00299 * 8 6 4 12 12 N 1.46901 * 109.46898 * 119.99727 * 2 1 3 13 13 C 1.46895 * 110.99993 * 58.95711 * 12 2 1 14 14 C 1.46900 * 111.00077 * 294.99805 * 12 2 1 15 15 C 1.50696 * 109.47166 * 190.00137 * 14 12 2 16 16 C 1.38265 * 119.97154 * 90.00608 * 15 14 12 17 17 C 1.38190 * 120.05064 * 180.25736 * 16 15 14 18 18 C 1.38449 * 119.98550 * 359.46058 * 17 16 15 19 19 F 1.35102 * 120.03001 * 180.25476 * 18 17 16 20 20 C 1.38549 * 119.93983 * 0.56170 * 18 17 16 21 21 Cl 1.73596 * 120.02562 * 179.74195 * 20 18 17 22 22 C 1.38222 * 119.96999 * 270.02354 * 15 14 12 23 23 H 1.09000 * 109.46966 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47482 * 300.00093 * 1 2 3 25 25 H 1.09008 * 109.46853 * 60.00651 * 1 2 3 26 26 H 0.97009 * 119.99508 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47041 * 296.04539 * 13 12 2 28 28 H 1.09002 * 109.47068 * 56.04692 * 13 12 2 29 29 H 1.09002 * 109.47390 * 176.04281 * 13 12 2 30 30 H 1.09008 * 109.46672 * 70.00349 * 14 12 2 31 31 H 1.08994 * 109.47515 * 310.00400 * 14 12 2 32 32 H 1.08002 * 119.97048 * 359.97157 * 16 15 14 33 33 H 1.07997 * 120.00826 * 179.74681 * 17 16 15 34 34 H 1.08006 * 119.99208 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3227 -1.1196 -4.0079 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4201 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5569 3.6006 16 6 3.6109 -0.0755 3.9676 17 6 4.2742 -0.6246 5.0484 18 6 3.6888 -1.6501 5.7713 19 9 4.3342 -2.1841 6.8313 20 6 2.4434 -2.1325 5.4028 21 17 1.7103 -3.4228 6.3036 22 6 1.7843 -1.5849 4.3171 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7096 1.1617 -3.4845 27 1 0.4420 -2.0730 1.3347 28 1 1.8168 -2.5950 0.3319 29 1 1.9617 -2.5868 2.1059 30 1 0.5721 -0.0344 2.5726 31 1 1.9296 1.0871 2.3125 32 1 4.0658 0.7272 3.4062 33 1 5.2469 -0.2508 5.3320 34 1 0.8135 -1.9606 4.0290 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:08 Heat of formation + Delta-G solvation = -36.596691 kcal Electronic energy + Delta-G solvation = -18382.860663 eV Core-core repulsion = 15255.529745 eV Total energy + Delta-G solvation = -3127.330918 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.98796 -40.57120 -38.60171 -37.53975 -34.85135 -32.53414 -31.96369 -30.13480 -28.08011 -27.14399 -25.25729 -24.10854 -22.60562 -20.97174 -18.78072 -18.23141 -17.68066 -17.21204 -16.82932 -16.70767 -16.11012 -15.46903 -15.31490 -14.89812 -14.68199 -14.52622 -14.20726 -13.95856 -13.49182 -13.13054 -12.91125 -12.75322 -12.63836 -12.47955 -12.44170 -12.32154 -12.13278 -12.01320 -11.93113 -11.60273 -10.89253 -10.45807 -9.99109 -9.62633 -8.84098 -8.07911 -6.17930 -0.05688 0.07643 0.95006 1.45850 1.46288 1.53780 2.37599 2.47773 3.05564 3.21904 3.50434 3.66994 3.77869 4.06275 4.18052 4.40758 4.57598 4.66243 4.69572 4.80660 4.84263 4.85397 4.94466 4.95754 5.10199 5.17797 5.22313 5.50129 5.58227 5.69448 5.74363 5.82565 6.21410 6.48587 6.74161 6.95058 7.51120 8.97638 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.004120 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.796803 B = 6794.000167 C = 6916.414523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.216 3.784 3 H 0.013 0.987 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.537 5.537 13 C 0.037 3.963 14 C 0.091 3.909 15 C -0.067 4.067 16 C -0.066 4.066 17 C -0.132 4.132 18 C 0.089 3.911 19 F -0.135 7.135 20 C -0.081 4.081 21 Cl -0.056 7.056 22 C -0.080 4.080 23 H 0.030 0.970 24 H 0.029 0.971 25 H 0.060 0.940 26 H 0.260 0.740 27 H 0.020 0.980 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.170 0.830 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 -3.323 15.889 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.109 3.891 3 H 0.031 0.969 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.780 3.220 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.260 5.260 13 C -0.111 4.111 14 C -0.037 4.037 15 C -0.068 4.068 16 C -0.085 4.085 17 C -0.151 4.151 18 C 0.069 3.931 19 F -0.114 7.114 20 C -0.108 4.108 21 Cl -0.027 7.027 22 C -0.099 4.099 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.171 0.829 33 H 0.187 0.813 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.388 -3.360 15.838 16.541 hybrid contribution -0.795 -0.536 -0.749 1.217 sum 2.592 -3.896 15.089 15.798 Atomic orbital electron populations 1.22222 1.00321 0.99193 1.00218 1.19079 0.90002 0.93190 0.86823 0.96861 1.21352 1.30553 1.12440 0.90928 0.92598 1.25614 0.95442 0.95776 1.01614 1.69995 1.37864 1.24079 1.23974 0.85674 0.78719 0.78664 0.78924 1.19901 1.21178 1.19897 1.62276 1.59707 1.02541 1.01479 1.22238 0.96996 0.90414 1.01445 1.21035 0.96865 0.98096 0.87690 1.19895 0.95618 0.95686 0.95606 1.21247 0.92995 0.99445 0.94803 1.21360 1.02239 0.95668 0.95842 1.17581 0.90833 0.96778 0.87920 1.91506 1.80802 1.85235 1.53849 1.20987 0.94880 0.96528 0.98425 1.98370 1.82321 1.48138 1.73915 1.20940 1.00743 0.95519 0.92724 0.95081 0.95183 0.92114 0.93043 0.96167 0.92690 0.91603 0.93926 0.89888 0.82859 0.81291 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.34 8.28 71.98 0.60 -6.75 16 2 C 0.22 10.30 2.34 44.17 0.10 10.40 16 3 H 0.01 0.71 8.03 -2.39 -0.02 0.69 16 4 C -0.51 -27.19 7.88 25.60 0.20 -26.99 16 5 H 0.06 2.97 6.77 -2.91 -0.02 2.95 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -51.30 11.32 21.45 0.24 -51.05 16 8 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 N -0.54 -21.03 4.73 -906.07 -4.29 -25.32 16 13 C 0.04 1.36 8.37 127.69 1.07 2.43 16 14 C 0.09 2.84 4.56 85.56 0.39 3.23 16 15 C -0.07 -1.76 4.88 -19.86 -0.10 -1.86 16 16 C -0.07 -1.51 9.70 22.26 0.22 -1.30 16 17 C -0.13 -2.72 10.03 22.31 0.22 -2.49 16 18 C 0.09 2.11 7.28 22.39 0.16 2.27 16 19 F -0.14 -3.30 16.84 44.97 0.76 -2.54 16 20 C -0.08 -1.98 6.33 22.36 0.14 -1.84 16 21 Cl -0.06 -1.32 28.62 -2.72 -0.08 -1.39 16 22 C -0.08 -2.00 7.75 22.28 0.17 -1.83 16 23 H 0.03 1.38 6.47 -2.39 -0.02 1.36 16 24 H 0.03 1.20 6.75 -2.39 -0.02 1.18 16 25 H 0.06 3.15 6.07 -2.38 -0.01 3.14 16 26 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 27 H 0.02 0.71 6.51 -2.39 -0.02 0.70 16 28 H 0.05 2.23 6.41 -2.39 -0.02 2.21 16 29 H 0.07 2.10 6.16 -2.39 -0.01 2.08 16 30 H 0.04 1.32 6.88 -2.38 -0.02 1.30 16 31 H 0.08 2.56 7.94 -2.39 -0.02 2.54 16 32 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.14 3.39 8.03 -2.91 -0.02 3.37 16 Total: -1.00 -56.72 295.51 3.40 -53.32 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.11 Total: 5.71 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 3.63 Total: -23.51 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -4.05 Total: -76.37 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.76 Total: -2.54 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.39 kcal Total: -56.72 3.40 -53.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.724 kcal (2) G-P(sol) polarization free energy of solvation -56.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds