Wall clock time and date at job start Mon Mar 30 2020 01:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47130 * 2 1 4 4 C 1.50694 * 109.47792 * 239.99769 * 2 1 3 5 5 H 1.08005 * 120.00072 * 239.99843 * 4 2 1 6 6 C 1.37877 * 119.99998 * 59.99484 * 4 2 1 7 7 N 1.31514 * 120.00198 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00148 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47331 * 90.00096 * 8 6 4 10 10 H 1.48499 * 109.47475 * 210.00637 * 8 6 4 11 11 H 1.48505 * 109.47294 * 330.00277 * 8 6 4 12 12 N 1.46906 * 109.47115 * 119.99221 * 2 1 3 13 13 C 1.46897 * 110.99590 * 58.95905 * 12 2 1 14 14 C 1.46902 * 110.99903 * 295.00824 * 12 2 1 15 15 C 1.50706 * 109.46577 * 189.99635 * 14 12 2 16 16 C 1.38214 * 120.00579 * 259.71943 * 15 14 12 17 17 C 1.38332 * 120.00896 * 179.79553 * 16 15 14 18 18 Cl 1.73603 * 119.98292 * 180.21098 * 17 16 15 19 19 C 1.38368 * 120.02617 * 0.46337 * 17 16 15 20 20 C 1.38172 * 120.01216 * 359.79284 * 19 17 16 21 21 C 1.38438 * 120.00374 * 80.00093 * 15 14 12 22 22 F 1.35093 * 120.01443 * 359.97438 * 21 15 14 23 23 H 1.08996 * 109.47680 * 300.00682 * 1 2 3 24 24 H 1.09007 * 109.46753 * 60.00757 * 1 2 3 25 25 H 1.09005 * 109.47130 * 179.97438 * 1 2 3 26 26 H 0.96998 * 120.00546 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.47329 * 296.04977 * 13 12 2 28 28 H 1.09001 * 109.47296 * 56.04489 * 13 12 2 29 29 H 1.08997 * 109.47027 * 176.04633 * 13 12 2 30 30 H 1.09000 * 109.46894 * 69.99868 * 14 12 2 31 31 H 1.09000 * 109.47263 * 309.99435 * 14 12 2 32 32 H 1.08004 * 119.99008 * 0.02562 * 16 15 14 33 33 H 1.08001 * 119.99689 * 179.77214 * 19 17 16 34 34 H 1.07996 * 120.00354 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9436 0.8300 -2.6035 8 14 2.3216 -1.1205 -4.0078 9 1 1.3432 -2.1619 -4.4117 10 1 2.4869 -0.1416 -5.1121 11 1 3.6297 -1.7584 -3.7120 12 7 2.0197 -0.6924 1.1996 13 6 1.5284 -2.0760 1.2461 14 6 1.6485 0.0394 2.4181 15 6 2.3677 -0.5569 3.6007 16 6 1.7061 -1.4297 4.4438 17 6 2.3675 -1.9803 5.5269 18 17 1.5375 -3.0808 6.5823 19 6 3.6886 -1.6503 5.7723 20 6 4.3493 -0.7737 4.9331 21 6 3.6894 -0.2259 3.8460 22 9 4.3349 0.6312 3.0252 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 0.7095 1.1615 -3.4845 27 1 0.4419 -2.0730 1.3348 28 1 1.8168 -2.5949 0.3320 29 1 1.9617 -2.5866 2.1061 30 1 0.5720 -0.0344 2.5725 31 1 1.9295 1.0872 2.3125 32 1 0.6738 -1.6847 4.2548 33 1 4.2034 -2.0776 6.6201 34 1 5.3804 -0.5159 5.1251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:28 Heat of formation + Delta-G solvation = -38.329124 kcal Electronic energy + Delta-G solvation = -18645.245779 eV Core-core repulsion = 15517.839738 eV Total energy + Delta-G solvation = -3127.406042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.83906 -40.45275 -38.73710 -37.36841 -34.95637 -32.94020 -31.31743 -30.27109 -28.25329 -27.19270 -25.42803 -23.85524 -22.67157 -21.01774 -18.57134 -18.23493 -17.69135 -17.34563 -17.00195 -16.56607 -15.98895 -15.55069 -15.25575 -15.03103 -14.49238 -14.30852 -14.19005 -14.08155 -13.64637 -13.19432 -12.98026 -12.86825 -12.63811 -12.58272 -12.37776 -12.18761 -12.13288 -12.00563 -11.94631 -11.59170 -10.92821 -10.49786 -10.08408 -9.51032 -8.89509 -8.10836 -6.21605 -0.03553 0.10066 1.08734 1.42269 1.43595 1.54073 2.37179 2.45326 3.18543 3.28885 3.41415 3.65880 3.70883 4.02966 4.17975 4.37655 4.51228 4.61119 4.68010 4.74896 4.78567 4.85188 4.89111 5.05513 5.10252 5.11844 5.16796 5.23037 5.53144 5.70166 5.70548 5.77802 6.17463 6.45330 6.68417 6.90973 7.47394 8.95389 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.028074 B = 0.004618 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.138076 B = 6062.188735 C = 6399.046964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.216 3.784 3 H 0.004 0.996 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.540 5.540 13 C 0.041 3.959 14 C 0.094 3.906 15 C -0.103 4.103 16 C -0.080 4.080 17 C -0.050 4.050 18 Cl -0.059 7.059 19 C -0.076 4.076 20 C -0.137 4.137 21 C 0.101 3.899 22 F -0.144 7.144 23 H 0.027 0.973 24 H 0.061 0.939 25 H 0.034 0.966 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.145 0.855 33 H 0.172 0.828 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.934 -5.733 18.404 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.109 3.891 3 H 0.022 0.978 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.263 5.263 13 C -0.107 4.107 14 C -0.034 4.034 15 C -0.105 4.105 16 C -0.099 4.099 17 C -0.076 4.076 18 Cl -0.030 7.030 19 C -0.095 4.095 20 C -0.156 4.156 21 C 0.082 3.918 22 F -0.122 7.122 23 H 0.046 0.954 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.162 0.838 33 H 0.190 0.810 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.320 -5.693 18.289 19.440 hybrid contribution -0.764 0.099 -1.277 1.491 sum 2.556 -5.594 17.012 18.090 Atomic orbital electron populations 1.22201 0.99978 0.99392 1.00166 1.19066 0.90234 0.92837 0.86929 0.97827 1.21353 1.30632 1.12442 0.90863 0.92589 1.25671 0.95400 0.95780 1.01775 1.70008 1.37913 1.24102 1.24010 0.85545 0.78786 0.78256 0.78963 1.20010 1.20991 1.19591 1.62262 1.59930 1.02790 1.01335 1.22189 0.97109 0.89941 1.01448 1.20873 0.97025 0.97409 0.88061 1.19839 0.93545 0.99647 0.97430 1.20884 1.00967 0.95243 0.92787 1.20939 0.94255 0.97726 0.94720 1.98374 1.78396 1.61524 1.64683 1.21170 0.91955 0.96269 1.00071 1.21347 1.02231 0.98476 0.93548 1.17958 0.90780 0.92374 0.90738 1.91501 1.81214 1.67817 1.71714 0.95398 0.91988 0.94661 0.92967 0.95908 0.92499 0.91696 0.93232 0.91639 0.83752 0.81017 0.81439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.61 8.27 71.98 0.60 -7.02 16 2 C 0.22 11.07 2.34 44.17 0.10 11.18 16 3 H 0.00 0.22 8.03 -2.38 -0.02 0.20 16 4 C -0.51 -28.53 7.88 25.60 0.20 -28.33 16 5 H 0.06 3.11 6.77 -2.91 -0.02 3.09 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -53.14 11.32 21.45 0.24 -52.90 16 8 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 N -0.54 -23.29 4.73 -906.02 -4.29 -27.58 16 13 C 0.04 1.59 8.51 127.69 1.09 2.68 16 14 C 0.09 3.41 4.26 85.56 0.36 3.77 16 15 C -0.10 -3.09 4.57 -19.82 -0.09 -3.18 16 16 C -0.08 -1.96 8.54 22.29 0.19 -1.77 16 17 C -0.05 -1.03 6.32 22.32 0.14 -0.89 16 18 Cl -0.06 -1.08 28.95 -2.72 -0.08 -1.16 16 19 C -0.08 -1.35 9.83 22.28 0.22 -1.13 16 20 C -0.14 -2.87 10.03 22.31 0.22 -2.65 16 21 C 0.10 2.96 7.25 22.37 0.16 3.12 16 22 F -0.14 -5.02 16.66 44.97 0.75 -4.27 16 23 H 0.03 1.18 6.75 -2.39 -0.02 1.16 16 24 H 0.06 3.34 6.07 -2.38 -0.01 3.33 16 25 H 0.03 1.62 6.48 -2.38 -0.02 1.61 16 26 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.02 0.84 6.51 -2.38 -0.02 0.82 16 28 H 0.06 2.40 6.41 -2.39 -0.02 2.38 16 29 H 0.06 2.17 6.66 -2.39 -0.02 2.16 16 30 H 0.05 1.70 6.79 -2.39 -0.02 1.68 16 31 H 0.07 2.53 7.80 -2.39 -0.02 2.51 16 32 H 0.14 3.30 8.03 -2.91 -0.02 3.28 16 33 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -61.26 296.36 3.41 -57.84 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 1.11 Total: 5.08 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 3.65 Total: -23.08 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -4.05 Total: -80.48 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.75 Total: -4.27 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -61.26 3.41 -57.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.515 kcal (2) G-P(sol) polarization free energy of solvation -61.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds