Wall clock time and date at job start Mon Mar 30 2020 01:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47304 * 120.00364 * 2 1 3 5 5 H 1.07998 * 120.00168 * 119.99387 * 4 2 1 6 6 C 1.37880 * 119.99248 * 299.99690 * 4 2 1 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47166 * 89.99890 * 8 6 4 10 10 H 1.48491 * 109.47208 * 210.00081 * 8 6 4 11 11 H 1.48505 * 109.47202 * 330.00211 * 8 6 4 12 12 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 13 13 C 1.46901 * 111.00443 * 306.04832 * 12 2 1 14 14 C 1.46906 * 110.99820 * 70.00145 * 12 2 1 15 15 C 1.50696 * 109.47351 * 169.99890 * 14 12 2 16 16 C 1.38242 * 120.00586 * 259.72832 * 15 14 12 17 17 C 1.38223 * 120.04716 * 179.77113 * 16 15 14 18 18 C 1.38260 * 120.06138 * 0.50025 * 17 16 15 19 19 C 1.38280 * 120.01511 * 359.74647 * 18 17 16 20 20 Cl 1.73598 * 120.02592 * 179.97438 * 19 18 17 21 21 C 1.38403 * 120.00566 * 79.99810 * 15 14 12 22 22 F 1.35091 * 120.03321 * 359.97438 * 21 15 14 23 23 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 25 25 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 26 26 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 28 28 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 29 29 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 30 30 H 1.08997 * 109.46995 * 289.99871 * 14 12 2 31 31 H 1.09001 * 109.46848 * 49.99877 * 14 12 2 32 32 H 1.08001 * 119.97552 * 359.97438 * 16 15 14 33 33 H 1.07999 * 119.97220 * 180.25379 * 17 16 15 34 34 H 1.08007 * 119.99441 * 179.73451 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6306 -0.5440 4.4118 10 1 1.3446 -0.9490 5.1122 11 1 2.4881 -2.5654 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4773 -0.5163 -3.5794 16 6 3.6727 0.0255 -4.0137 17 6 4.3402 -0.5394 -5.0841 18 6 3.8085 -1.6408 -5.7288 19 6 2.6103 -2.1817 -5.2998 20 17 1.9420 -3.5642 -6.1096 21 6 1.9431 -1.6188 -4.2233 22 9 0.7725 -2.1460 -3.8029 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 0.7089 1.1612 3.4844 27 1 1.8663 -2.5522 -2.1648 28 1 0.3555 -1.9520 -1.4399 29 1 1.6466 -2.5988 -0.3991 30 1 0.6814 0.1052 -2.6087 31 1 2.1025 1.1188 -2.2603 32 1 4.0869 0.8887 -3.5141 33 1 5.2761 -0.1176 -5.4197 34 1 4.3289 -2.0787 -6.5678 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093091072.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:30 Heat of formation + Delta-G solvation = -32.340036 kcal Electronic energy + Delta-G solvation = -18831.458888 eV Core-core repulsion = 15704.312552 eV Total energy + Delta-G solvation = -3127.146335 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.09701 -40.35336 -38.75488 -37.51772 -34.94141 -32.84292 -31.38949 -30.27220 -28.19111 -27.27823 -25.53759 -23.71784 -22.70099 -21.00385 -18.72802 -18.27280 -17.73737 -17.51368 -17.06918 -16.69206 -15.79570 -15.46412 -15.37124 -15.13915 -14.53647 -14.31005 -14.18950 -14.01292 -13.43785 -13.21361 -12.91273 -12.76104 -12.68588 -12.47012 -12.40027 -12.29767 -12.22297 -12.04341 -11.94878 -11.65770 -10.96193 -10.48832 -9.86785 -9.67953 -8.93062 -8.10586 -6.21175 0.00736 0.08563 0.98005 1.43267 1.43918 1.54198 2.41079 2.48772 3.10511 3.18576 3.43049 3.63725 3.85147 4.07472 4.23722 4.36049 4.47689 4.59841 4.64646 4.74596 4.77176 4.86978 4.96255 4.99768 5.10890 5.12956 5.25132 5.41928 5.48057 5.68456 5.74300 5.77367 6.16285 6.41452 6.65954 6.90280 7.47634 8.95447 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030595 B = 0.004684 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.963183 B = 5976.511176 C = 6163.428972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.016 0.984 4 C -0.514 4.514 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.533 5.533 13 C 0.043 3.957 14 C 0.091 3.909 15 C -0.103 4.103 16 C -0.075 4.075 17 C -0.102 4.102 18 C -0.084 4.084 19 C -0.085 4.085 20 Cl -0.058 7.058 21 C 0.087 3.913 22 F -0.140 7.140 23 H 0.028 0.972 24 H 0.064 0.936 25 H 0.022 0.978 26 H 0.262 0.738 27 H 0.060 0.940 28 H 0.016 0.984 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.178 0.822 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.998 -3.101 -17.874 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.109 3.891 3 H 0.034 0.966 4 C -0.552 4.552 5 H 0.072 0.928 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.257 5.257 13 C -0.106 4.106 14 C -0.036 4.036 15 C -0.105 4.105 16 C -0.093 4.093 17 C -0.120 4.120 18 C -0.102 4.102 19 C -0.112 4.112 20 Cl -0.029 7.029 21 C 0.066 3.934 22 F -0.119 7.119 23 H 0.047 0.953 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.171 0.829 33 H 0.196 0.804 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.311 -3.187 -17.734 19.091 hybrid contribution -1.438 -0.496 1.116 1.887 sum 4.873 -3.684 -16.619 17.706 Atomic orbital electron populations 1.22216 1.00514 0.99055 0.99989 1.19116 0.89887 0.93240 0.86900 0.96619 1.21322 1.30608 1.12423 0.90848 0.92818 1.25652 0.95356 0.95819 1.01702 1.69997 1.37762 1.24172 1.24038 0.85549 0.78089 0.78952 0.78981 1.20017 1.20971 1.19667 1.62361 1.58742 1.02803 1.01752 1.22333 0.96164 0.91276 1.00808 1.20962 0.96789 0.97759 0.88134 1.19972 0.97950 0.95449 0.97117 1.21379 0.91811 1.00141 0.95976 1.21587 1.01140 0.94823 0.94456 1.21349 0.92137 0.95967 1.00753 1.21148 0.98428 0.94473 0.97160 1.98368 1.85528 1.41009 1.78029 1.17550 0.84152 0.95611 0.96050 1.91482 1.45569 1.85562 1.89266 0.95300 0.91721 0.95854 0.92929 0.92136 0.96570 0.92970 0.95219 0.89224 0.82866 0.80449 0.81208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.88 8.22 71.98 0.59 -7.28 16 2 C 0.22 10.97 2.31 44.17 0.10 11.07 16 3 H 0.02 0.88 7.93 -2.39 -0.02 0.86 16 4 C -0.51 -28.46 7.91 25.60 0.20 -28.25 16 5 H 0.05 3.01 7.12 -2.91 -0.02 2.99 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -52.69 11.32 21.45 0.24 -52.45 16 8 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 N -0.53 -23.23 4.69 -906.02 -4.25 -27.49 16 13 C 0.04 1.79 7.23 127.69 0.92 2.72 16 14 C 0.09 3.30 4.57 85.55 0.39 3.69 16 15 C -0.10 -3.09 5.16 -19.83 -0.10 -3.19 16 16 C -0.07 -1.67 9.67 22.27 0.22 -1.46 16 17 C -0.10 -1.66 10.04 22.27 0.22 -1.44 16 18 C -0.08 -1.49 9.83 22.28 0.22 -1.27 16 19 C -0.08 -2.08 6.33 22.37 0.14 -1.94 16 20 Cl -0.06 -1.37 28.62 -2.72 -0.08 -1.45 16 21 C 0.09 2.62 5.86 22.40 0.13 2.75 16 22 F -0.14 -4.83 13.38 44.97 0.60 -4.22 16 23 H 0.03 1.41 6.42 -2.39 -0.02 1.39 16 24 H 0.06 3.54 6.07 -2.38 -0.01 3.52 16 25 H 0.02 1.03 6.91 -2.39 -0.02 1.01 16 26 H 0.26 14.27 8.31 -92.71 -0.77 13.49 16 27 H 0.06 2.35 5.06 -2.39 -0.01 2.33 16 28 H 0.02 0.69 6.13 -2.39 -0.01 0.67 16 29 H 0.05 2.36 6.76 -2.38 -0.02 2.35 16 30 H 0.03 1.13 6.86 -2.39 -0.02 1.11 16 31 H 0.09 3.06 7.79 -2.39 -0.02 3.04 16 32 H 0.15 2.97 8.03 -2.91 -0.02 2.94 16 33 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -62.29 290.81 3.14 -59.14 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 1.12 Total: 3.94 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 3.49 Total: -23.42 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -4.01 Total: -79.93 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.60 Total: -4.22 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -62.29 3.14 -59.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091072.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.802 kcal (2) G-P(sol) polarization free energy of solvation -62.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds