Wall clock time and date at job start Mon Mar 30 2020 01:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47308 * 2 1 4 4 N 1.46499 * 109.47038 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00144 * 85.05153 * 4 3 2 6 6 H 1.08000 * 119.99798 * 354.48048 * 5 4 3 7 7 C 1.38812 * 119.99632 * 174.20507 * 5 4 3 8 8 N 1.31610 * 120.00433 * 5.01737 * 7 5 4 9 9 Si 1.86801 * 119.99496 * 185.01969 * 7 5 4 10 10 H 1.48499 * 109.47418 * 89.99901 * 9 7 5 11 11 H 1.48502 * 109.46888 * 210.00001 * 9 7 5 12 12 H 1.48496 * 109.47161 * 329.99821 * 9 7 5 13 13 C 1.46498 * 119.99922 * 265.04911 * 4 3 2 14 14 C 1.50702 * 109.47133 * 274.49804 * 13 4 3 15 15 C 1.38255 * 119.99195 * 265.07012 * 14 13 4 16 16 C 1.38227 * 120.05971 * 179.72728 * 15 14 13 17 17 C 1.38236 * 120.04776 * 0.54791 * 16 15 14 18 18 C 1.38399 * 119.98766 * 359.72966 * 17 16 15 19 19 F 1.35100 * 120.03098 * 179.97438 * 18 17 16 20 20 C 1.38279 * 119.99666 * 85.34735 * 14 13 4 21 21 Cl 1.73606 * 120.02045 * 0.02562 * 20 14 13 22 22 H 1.08994 * 109.47547 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47553 * 300.00452 * 1 2 3 24 24 H 1.09003 * 109.47366 * 60.00096 * 1 2 3 25 25 H 1.08991 * 109.47465 * 239.99858 * 2 1 3 26 26 H 1.09008 * 109.46994 * 119.99627 * 2 1 3 27 27 H 1.08991 * 109.46974 * 59.99557 * 3 2 1 28 28 H 1.09008 * 109.46789 * 299.99753 * 3 2 1 29 29 H 0.97002 * 120.00098 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.47143 * 34.49324 * 13 4 3 31 31 H 1.08997 * 109.47476 * 154.49732 * 13 4 3 32 32 H 1.08001 * 119.97152 * 0.02562 * 15 14 13 33 33 H 1.08005 * 119.97316 * 180.27979 * 16 15 14 34 34 H 1.07999 * 120.00527 * 179.74735 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1902 1.3400 -1.1806 6 1 3.6543 1.1697 -2.1027 7 6 5.5730 1.4606 -1.1934 8 7 6.2343 1.5745 -0.0612 9 14 6.4953 1.4613 -2.8179 10 1 6.6176 2.8545 -3.3171 11 1 7.8499 0.8863 -2.6182 12 1 5.7518 0.6436 -3.8096 13 6 4.2369 1.5521 1.2649 14 6 4.3915 3.0057 1.6314 15 6 5.5434 3.6871 1.2848 16 6 5.6843 5.0219 1.6153 17 6 4.6784 5.6746 2.3030 18 6 3.5268 4.9928 2.6560 19 9 2.5433 5.6297 3.3286 20 6 3.3837 3.6561 2.3194 21 17 1.9404 2.7986 2.7617 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9563 0.8899 28 1 1.6767 1.9564 -0.8901 29 1 7.2006 1.6584 -0.0702 30 1 3.6847 1.0361 2.0504 31 1 5.2219 1.0984 1.1551 32 1 6.3319 3.1774 0.7510 33 1 6.5829 5.5540 1.3399 34 1 4.7909 6.7164 2.5645 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093174709.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:39 Heat of formation + Delta-G solvation = -3.065435 kcal Electronic energy + Delta-G solvation = -19252.351438 eV Core-core repulsion = 16126.474544 eV Total energy + Delta-G solvation = -3125.876893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.86820 -40.12114 -37.78403 -37.42151 -34.86712 -32.87042 -31.75634 -30.99423 -27.50325 -27.25936 -24.10687 -23.44722 -22.51174 -21.46406 -19.09359 -18.14453 -17.34534 -17.09603 -16.84957 -16.66326 -15.98655 -15.46035 -15.16314 -14.89418 -14.69156 -14.35309 -14.08335 -13.59676 -13.33714 -13.10061 -12.88974 -12.69156 -12.47241 -12.31722 -12.24798 -12.09700 -11.99953 -11.90006 -11.56041 -11.47774 -10.86549 -10.62749 -9.53291 -9.40000 -8.71424 -7.44635 -5.19089 0.24281 0.42170 1.16720 1.55212 1.58133 1.63688 2.55782 2.78563 3.24893 3.31720 3.83974 3.91497 4.24146 4.26853 4.40010 4.51181 4.59569 4.64735 4.81572 4.86112 4.99765 5.04516 5.12260 5.21102 5.27380 5.32819 5.41024 5.57379 5.59119 5.75845 5.91665 6.05089 6.27457 6.65800 7.35578 7.94892 8.30676 9.23587 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014757 B = 0.009814 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.980757 B = 2852.464625 C = 4421.369138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.118 3.882 4 N -0.600 5.600 5 C -0.221 4.221 6 H 0.070 0.930 7 C -0.060 4.060 8 N -0.917 5.917 9 Si 0.973 3.027 10 H -0.292 1.292 11 H -0.290 1.290 12 H -0.285 1.285 13 C 0.144 3.856 14 C -0.041 4.041 15 C -0.116 4.116 16 C -0.105 4.105 17 C -0.155 4.155 18 C 0.070 3.930 19 F -0.142 7.142 20 C -0.096 4.096 21 Cl -0.061 7.061 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.025 0.975 29 H 0.253 0.747 30 H 0.013 0.987 31 H 0.162 0.838 32 H 0.177 0.823 33 H 0.156 0.844 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.251 4.043 3.948 6.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.172 4.172 3 C -0.008 4.008 4 N -0.318 5.318 5 C -0.350 4.350 6 H 0.088 0.912 7 C -0.249 4.249 8 N -0.571 5.571 9 Si 0.803 3.197 10 H -0.220 1.220 11 H -0.216 1.216 12 H -0.211 1.211 13 C 0.019 3.981 14 C -0.044 4.044 15 C -0.134 4.134 16 C -0.124 4.124 17 C -0.174 4.174 18 C 0.050 3.950 19 F -0.121 7.121 20 C -0.124 4.124 21 Cl -0.032 7.032 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.177 0.823 32 H 0.193 0.807 33 H 0.173 0.827 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.296 3.954 3.953 6.490 hybrid contribution -0.119 0.072 -0.627 0.642 sum -3.414 4.026 3.326 6.239 Atomic orbital electron populations 1.21651 0.94549 1.01894 1.01578 1.21934 0.96087 0.98835 1.00338 1.21540 0.83485 0.95279 1.00490 1.44305 1.00735 1.83690 1.03105 1.19793 0.90473 1.37795 0.86982 0.91159 1.25212 0.96685 1.03259 0.99753 1.69131 1.06659 1.58488 1.22832 0.85148 0.77815 0.77087 0.79645 1.21951 1.21636 1.21065 1.21451 1.03047 0.89235 0.84414 1.20871 0.91112 1.00651 0.91812 1.23061 0.99707 0.94057 0.96581 1.21599 0.99174 0.94792 0.96792 1.21283 0.92252 1.01672 1.02190 1.17575 0.88400 0.89428 0.99598 1.91443 1.60871 1.81645 1.78148 1.21257 0.91688 0.92069 1.07408 1.98265 1.36990 1.77106 1.90875 0.91800 0.92925 0.92643 0.93913 0.93811 0.90771 0.95628 0.93388 0.96856 0.82295 0.80698 0.82664 0.82030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.91 71.98 0.71 -3.30 16 2 C -0.13 -4.89 6.23 30.59 0.19 -4.70 16 3 C 0.12 4.94 5.69 86.38 0.49 5.43 16 4 N -0.60 -28.76 2.52 -706.33 -1.78 -30.54 16 5 C -0.22 -11.28 9.82 84.03 0.82 -10.46 16 6 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 7 C -0.06 -2.95 5.45 84.86 0.46 -2.48 16 8 N -0.92 -44.78 5.72 21.65 0.12 -44.65 16 9 Si 0.97 41.61 29.56 68.60 2.03 43.63 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 13 C 0.14 6.73 4.92 85.63 0.42 7.15 16 14 C -0.04 -1.78 5.46 -19.85 -0.11 -1.88 16 15 C -0.12 -4.75 9.21 22.27 0.21 -4.54 16 16 C -0.11 -3.49 10.04 22.27 0.22 -3.27 16 17 C -0.15 -4.89 10.03 22.31 0.22 -4.67 16 18 C 0.07 2.56 7.28 22.39 0.16 2.72 16 19 F -0.14 -5.01 16.84 44.97 0.76 -4.25 16 20 C -0.10 -3.88 6.32 22.36 0.14 -3.73 16 21 Cl -0.06 -2.28 23.59 -2.72 -0.06 -2.35 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.07 2.99 3.94 -2.39 -0.01 2.98 16 28 H 0.03 1.09 8.08 -2.38 -0.02 1.07 16 29 H 0.25 11.88 8.08 -92.71 -0.75 11.13 16 30 H 0.01 0.61 7.07 -2.39 -0.02 0.59 16 31 H 0.16 8.19 4.56 -61.53 -0.28 7.91 16 32 H 0.18 7.76 4.53 -3.61 -0.02 7.75 16 33 H 0.16 4.04 8.06 -2.91 -0.02 4.01 16 34 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -52.04 290.83 5.88 -46.17 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.86 Total: 15.73 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 3.95 Total: -23.73 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -1.66 Total: -75.19 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.76 Total: -4.25 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.06 Total: -2.35 kcal Total: -52.04 5.88 -46.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093174709.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.100 kcal (2) G-P(sol) polarization free energy of solvation -52.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds