Wall clock time and date at job start Mon Mar 30 2020 01:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46907 * 110.99659 * 2 1 4 4 C 1.53003 * 109.46859 * 66.04199 * 3 2 1 5 5 C 1.50707 * 109.46836 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99875 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99985 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99902 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00176 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46772 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47476 * 119.99658 * 9 7 5 12 12 H 1.48503 * 109.47010 * 239.99850 * 9 7 5 13 13 C 1.46893 * 111.00304 * 236.04608 * 2 1 3 14 14 C 1.50701 * 109.47098 * 293.95279 * 13 2 1 15 15 C 1.38265 * 119.97209 * 270.01984 * 14 13 2 16 16 C 1.38212 * 120.06111 * 180.02562 * 15 14 13 17 17 C 1.38324 * 120.01216 * 359.95565 * 16 15 14 18 18 Cl 1.73601 * 120.02683 * 180.29713 * 17 16 15 19 19 C 1.38555 * 119.94892 * 0.02568 * 17 16 15 20 20 F 1.35095 * 120.02786 * 180.02562 * 19 17 16 21 21 C 1.38189 * 119.97632 * 90.00441 * 14 13 2 22 22 H 1.09007 * 109.46439 * 183.95214 * 1 2 3 23 23 H 1.08999 * 109.47408 * 303.95139 * 1 2 3 24 24 H 1.09002 * 109.47123 * 63.95585 * 1 2 3 25 25 H 1.08989 * 109.47131 * 186.04242 * 3 2 1 26 26 H 1.09000 * 109.47046 * 306.04453 * 3 2 1 27 27 H 1.09000 * 109.47598 * 299.99622 * 4 3 2 28 28 H 1.09000 * 109.47085 * 60.00277 * 4 3 2 29 29 H 0.97002 * 119.99868 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47104 * 173.94757 * 13 2 1 31 31 H 1.09006 * 109.47139 * 53.95063 * 13 2 1 32 32 H 1.08000 * 119.97259 * 0.02562 * 15 14 13 33 33 H 1.08000 * 119.99873 * 180.02562 * 16 15 14 34 34 H 1.08003 * 120.00788 * 0.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 1.3183 5 6 2.1707 3.4647 1.3180 6 1 2.7182 3.8330 0.4629 7 6 1.9654 4.2819 2.4093 8 7 1.2984 3.8336 3.4503 9 14 2.6335 6.0264 2.4088 10 1 3.3408 6.2851 1.1289 11 1 1.5104 6.9866 2.5570 12 1 3.5808 6.1940 3.5401 13 6 1.9955 -0.7659 -1.1375 14 6 1.6371 -2.2204 -0.9728 15 6 2.4945 -3.0712 -0.2999 16 6 2.1678 -4.4055 -0.1482 17 6 0.9818 -4.8910 -0.6689 18 17 0.5675 -6.5653 -0.4718 19 6 0.1221 -4.0388 -1.3429 20 9 -1.0369 -4.5111 -1.8516 21 6 0.4516 -2.7027 -1.4940 22 1 -0.3632 -1.0253 0.0708 23 1 -0.3634 0.5739 0.8524 24 1 -0.3633 0.4512 -0.9233 25 1 3.0796 1.3446 -0.1082 26 1 1.5611 1.9274 -0.8309 27 1 0.5470 2.0846 1.4265 28 1 2.0656 1.5016 2.1492 29 1 1.1543 4.4084 4.2183 30 1 3.0798 -0.6609 -1.1756 31 1 1.5612 -0.3872 -2.0628 32 1 3.4203 -2.6928 0.1076 33 1 2.8380 -5.0691 0.3780 34 1 -0.2175 -2.0375 -2.0197 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095977680.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:14 Heat of formation + Delta-G solvation = -31.662232 kcal Electronic energy + Delta-G solvation = -17816.548224 eV Core-core repulsion = 14689.431281 eV Total energy + Delta-G solvation = -3127.116944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.09348 -39.61766 -37.25523 -36.48697 -33.24210 -31.71947 -30.85478 -29.33259 -27.07724 -25.34871 -23.15625 -23.07185 -21.20774 -19.96564 -17.58670 -16.84633 -16.58856 -16.48113 -15.92404 -15.02928 -14.75196 -14.60759 -14.36026 -14.03844 -13.61584 -13.13859 -12.91720 -12.71422 -12.27107 -12.23866 -11.64290 -11.58163 -11.39655 -11.20288 -11.09654 -11.03649 -10.90353 -10.55336 -9.91915 -9.47599 -9.18780 -9.11479 -8.75362 -8.36391 -7.84894 -6.02499 -4.05219 0.78149 0.92337 1.81449 3.23784 3.29196 3.36897 3.40369 3.88354 4.34863 4.43164 4.56539 4.67249 4.89385 5.02250 5.33396 5.34231 5.38731 5.62502 5.67992 5.74960 5.79458 5.87712 5.89225 6.20122 6.30235 6.38775 6.46381 6.53111 6.89363 7.38142 7.44466 7.73495 7.84596 8.03772 8.39265 9.02220 9.58743 11.08808 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.043194 B = 0.003163 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.084514 B = 8851.588562 C = 8939.017974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.063 3.937 4 C 0.027 3.973 5 C -0.523 4.523 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.086 3.914 14 C -0.032 4.032 15 C -0.096 4.096 16 C -0.083 4.083 17 C -0.079 4.079 18 Cl -0.059 7.059 19 C 0.107 3.893 20 F -0.130 7.130 21 C -0.138 4.138 22 H 0.058 0.942 23 H 0.081 0.919 24 H 0.019 0.981 25 H 0.062 0.938 26 H 0.022 0.978 27 H 0.018 0.982 28 H 0.025 0.975 29 H 0.260 0.740 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 -17.325 -9.941 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.260 5.260 3 C -0.064 4.064 4 C -0.010 4.010 5 C -0.561 4.561 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.042 4.042 14 C -0.033 4.033 15 C -0.115 4.115 16 C -0.102 4.102 17 C -0.107 4.107 18 Cl -0.030 7.030 19 C 0.086 3.914 20 F -0.109 7.109 21 C -0.157 4.157 22 H 0.076 0.924 23 H 0.100 0.900 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.240 -17.649 -9.344 19.971 hybrid contribution -0.294 1.116 -0.673 1.336 sum -0.055 -16.533 -10.017 19.331 Atomic orbital electron populations 1.22492 0.87877 1.01220 1.01199 1.62151 1.07890 1.16103 1.39821 1.22393 0.98625 0.84663 1.00682 1.19112 0.97004 0.94058 0.90826 1.21217 1.35241 0.97727 1.01957 0.92729 1.24995 0.95274 0.98488 0.95567 1.69981 1.40764 1.36368 1.06018 0.86543 0.78741 0.84740 0.77998 1.19771 1.21040 1.20969 1.21139 1.01116 0.88533 0.93399 1.19867 0.92638 0.96345 0.94405 1.21134 1.00699 0.91836 0.97817 1.20983 0.94445 0.96242 0.98514 1.20968 0.97704 0.86364 1.05681 1.98375 1.93496 1.14787 1.96337 1.17347 0.83286 0.92121 0.98601 1.91526 1.45712 1.88744 1.84876 1.21076 0.98574 0.92920 1.03152 0.92355 0.90014 0.96232 0.91915 0.95993 0.96395 0.95649 0.93017 0.89426 0.93951 0.83977 0.83998 0.84071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.94 60.07 0.54 0.87 16 2 N -0.54 -9.06 4.75 -244.36 -1.16 -10.22 16 3 C 0.06 1.25 4.90 -3.82 -0.02 1.23 16 4 C 0.03 0.69 4.90 -27.88 -0.14 0.55 16 5 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 6 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.09 1.12 5.12 -4.98 -0.03 1.10 16 14 C -0.03 -0.38 4.88 -104.63 -0.51 -0.89 16 15 C -0.10 -1.03 9.70 -39.58 -0.38 -1.42 16 16 C -0.08 -0.84 9.83 -39.56 -0.39 -1.23 16 17 C -0.08 -0.91 6.33 -39.43 -0.25 -1.16 16 18 Cl -0.06 -0.63 28.62 -51.86 -1.48 -2.12 16 19 C 0.11 1.29 7.28 -39.39 -0.29 1.01 16 20 F -0.13 -1.66 16.84 2.25 0.04 -1.62 16 21 C -0.14 -1.61 7.94 -39.52 -0.31 -1.92 16 22 H 0.06 0.85 6.17 -51.92 -0.32 0.53 16 23 H 0.08 1.50 6.30 -51.93 -0.33 1.18 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 1.21 7.93 -51.94 -0.41 0.80 16 26 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 27 H 0.02 0.48 6.47 -51.93 -0.34 0.14 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.09 1.06 7.87 -51.93 -0.41 0.65 16 31 H 0.04 0.52 8.06 -51.93 -0.42 0.11 16 32 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.14 1.50 8.03 -52.48 -0.42 1.08 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -29.54 306.15 -8.77 -38.31 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -4.30 Total: -4.38 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.19 Total: -15.11 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.43 Total: -36.00 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.12 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.54 -8.77 -38.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095977680.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.646 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds