Wall clock time and date at job start Mon Mar 30 2020 01:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46907 * 110.99659 * 2 1 4 4 C 1.53003 * 109.46859 * 66.04199 * 3 2 1 5 5 C 1.50707 * 109.46836 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99875 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99985 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99902 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00176 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46772 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47476 * 119.99658 * 9 7 5 12 12 H 1.48503 * 109.47010 * 239.99850 * 9 7 5 13 13 C 1.46893 * 111.00304 * 236.04608 * 2 1 3 14 14 C 1.50701 * 109.47098 * 293.95279 * 13 2 1 15 15 C 1.38265 * 119.97209 * 270.01984 * 14 13 2 16 16 C 1.38212 * 120.06111 * 180.02562 * 15 14 13 17 17 C 1.38324 * 120.01216 * 359.95565 * 16 15 14 18 18 Cl 1.73601 * 120.02683 * 180.29713 * 17 16 15 19 19 C 1.38555 * 119.94892 * 0.02568 * 17 16 15 20 20 F 1.35095 * 120.02786 * 180.02562 * 19 17 16 21 21 C 1.38189 * 119.97632 * 90.00441 * 14 13 2 22 22 H 1.09007 * 109.46439 * 183.95214 * 1 2 3 23 23 H 1.08999 * 109.47408 * 303.95139 * 1 2 3 24 24 H 1.09002 * 109.47123 * 63.95585 * 1 2 3 25 25 H 1.08989 * 109.47131 * 186.04242 * 3 2 1 26 26 H 1.09000 * 109.47046 * 306.04453 * 3 2 1 27 27 H 1.09000 * 109.47598 * 299.99622 * 4 3 2 28 28 H 1.09000 * 109.47085 * 60.00277 * 4 3 2 29 29 H 0.97002 * 119.99868 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47104 * 173.94757 * 13 2 1 31 31 H 1.09006 * 109.47139 * 53.95063 * 13 2 1 32 32 H 1.08000 * 119.97259 * 0.02562 * 15 14 13 33 33 H 1.08000 * 119.99873 * 180.02562 * 16 15 14 34 34 H 1.08003 * 120.00788 * 0.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 1.3183 5 6 2.1707 3.4647 1.3180 6 1 2.7182 3.8330 0.4629 7 6 1.9654 4.2819 2.4093 8 7 1.2984 3.8336 3.4503 9 14 2.6335 6.0264 2.4088 10 1 3.3408 6.2851 1.1289 11 1 1.5104 6.9866 2.5570 12 1 3.5808 6.1940 3.5401 13 6 1.9955 -0.7659 -1.1375 14 6 1.6371 -2.2204 -0.9728 15 6 2.4945 -3.0712 -0.2999 16 6 2.1678 -4.4055 -0.1482 17 6 0.9818 -4.8910 -0.6689 18 17 0.5675 -6.5653 -0.4718 19 6 0.1221 -4.0388 -1.3429 20 9 -1.0369 -4.5111 -1.8516 21 6 0.4516 -2.7027 -1.4940 22 1 -0.3632 -1.0253 0.0708 23 1 -0.3634 0.5739 0.8524 24 1 -0.3633 0.4512 -0.9233 25 1 3.0796 1.3446 -0.1082 26 1 1.5611 1.9274 -0.8309 27 1 0.5470 2.0846 1.4265 28 1 2.0656 1.5016 2.1492 29 1 1.1543 4.4084 4.2183 30 1 3.0798 -0.6609 -1.1756 31 1 1.5612 -0.3872 -2.0628 32 1 3.4203 -2.6928 0.1076 33 1 2.8380 -5.0691 0.3780 34 1 -0.2175 -2.0375 -2.0197 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095977680.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:14 Heat of formation + Delta-G solvation = -48.128137 kcal Electronic energy + Delta-G solvation = -17817.262240 eV Core-core repulsion = 14689.431281 eV Total energy + Delta-G solvation = -3127.830959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.03196 -40.55045 -38.44727 -37.48082 -35.19812 -32.99851 -31.73745 -31.00092 -28.25586 -27.03981 -24.63994 -23.98848 -22.35531 -21.54999 -18.61929 -18.45379 -17.74011 -17.44817 -16.91020 -16.54154 -16.36701 -16.01705 -15.58600 -14.97012 -14.72702 -14.30445 -14.20087 -14.02208 -13.93645 -13.31444 -13.13582 -12.87190 -12.65612 -12.60449 -12.45289 -12.33278 -12.22943 -11.94737 -11.76790 -11.31605 -11.20976 -10.52227 -10.01532 -9.67877 -9.17629 -8.17841 -6.28655 -0.11483 0.06775 0.95305 1.42163 1.42607 1.55500 2.32861 2.43515 2.99569 3.16100 3.25900 3.57827 3.70306 4.04311 4.15703 4.29715 4.43050 4.44666 4.53174 4.63387 4.76009 4.80378 4.83609 4.94952 5.03668 5.05652 5.14108 5.44392 5.49503 5.66836 5.69467 5.80917 6.09851 6.25656 6.34029 6.89687 7.40592 8.94343 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.043194 B = 0.003163 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.084514 B = 8851.588562 C = 8939.017974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.080 3.920 4 C 0.034 3.966 5 C -0.541 4.541 6 H 0.062 0.938 7 C 0.000 4.000 8 N -0.932 5.932 9 Si 0.965 3.035 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.089 3.911 14 C -0.042 4.042 15 C -0.095 4.095 16 C -0.078 4.078 17 C -0.085 4.085 18 Cl -0.056 7.056 19 C 0.091 3.909 20 F -0.137 7.137 21 C -0.138 4.138 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.024 0.976 27 H -0.007 1.007 28 H -0.007 1.007 29 H 0.263 0.737 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.157 0.843 33 H 0.166 0.834 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -17.417 -10.954 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.047 4.047 4 C -0.004 4.004 5 C -0.580 4.580 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.038 4.038 14 C -0.043 4.043 15 C -0.113 4.113 16 C -0.097 4.097 17 C -0.113 4.113 18 Cl -0.027 7.027 19 C 0.071 3.929 20 F -0.116 7.116 21 C -0.157 4.157 22 H 0.093 0.907 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.012 0.988 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.175 0.825 33 H 0.184 0.816 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.367 -17.758 -10.378 20.614 hybrid contribution -0.661 1.048 -0.352 1.288 sum 0.707 -16.710 -10.730 19.871 Atomic orbital electron populations 1.22406 0.87704 1.01780 1.00359 1.62008 1.08191 1.14507 1.42461 1.22008 0.99186 0.86150 0.97401 1.18951 0.95023 0.93643 0.92758 1.21676 1.35125 0.98943 1.02222 0.91972 1.25952 0.95503 1.03154 0.95161 1.70119 1.42150 1.38168 1.06813 0.85407 0.78112 0.79042 0.78514 1.18384 1.20640 1.20483 1.21169 1.01834 0.88570 0.92206 1.19797 0.93177 0.95808 0.95475 1.21364 1.00981 0.91951 0.97034 1.21239 0.94184 0.96370 0.97890 1.21160 0.98021 0.86560 1.05553 1.98377 1.93531 1.14479 1.96292 1.17504 0.83429 0.92569 0.99413 1.91505 1.46155 1.88843 1.85098 1.21151 0.98638 0.92911 1.03033 0.90680 0.93168 0.95057 0.90991 0.95777 0.98844 0.98876 0.92866 0.88094 0.92791 0.82533 0.81644 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 8.94 127.69 1.14 1.96 16 2 N -0.55 -18.00 4.75 -927.02 -4.41 -22.41 16 3 C 0.08 3.13 4.90 86.30 0.42 3.55 16 4 C 0.03 1.74 4.90 29.85 0.15 1.89 16 5 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 6 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 7 C 0.00 0.01 5.46 84.65 0.46 0.47 16 8 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 9 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 10 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 C 0.09 2.14 5.12 85.56 0.44 2.58 16 14 C -0.04 -0.91 4.88 -19.87 -0.10 -1.01 16 15 C -0.09 -1.81 9.70 22.27 0.22 -1.60 16 16 C -0.08 -1.41 9.83 22.28 0.22 -1.19 16 17 C -0.09 -1.80 6.33 22.37 0.14 -1.66 16 18 Cl -0.06 -1.12 28.62 -2.72 -0.08 -1.20 16 19 C 0.09 2.09 7.28 22.39 0.16 2.25 16 20 F -0.14 -3.39 16.84 44.97 0.76 -2.63 16 21 C -0.14 -3.00 7.94 22.31 0.18 -2.82 16 22 H 0.07 2.12 6.17 -2.38 -0.01 2.10 16 23 H 0.05 1.91 6.30 -2.39 -0.02 1.89 16 24 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 26 H 0.02 0.93 8.12 -2.39 -0.02 0.91 16 27 H -0.01 -0.38 6.47 -2.39 -0.02 -0.39 16 28 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.10 2.16 7.87 -2.39 -0.02 2.14 16 31 H 0.05 1.19 8.06 -2.38 -0.02 1.17 16 32 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 33 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.15 2.92 8.03 -2.91 -0.02 2.89 16 Total: -1.00 -63.51 306.15 3.34 -60.17 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: 1.10 Total: 2.11 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 3.66 Total: -25.48 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -4.12 Total: -78.59 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.76 Total: -2.63 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -63.51 3.34 -60.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095977680.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.040 kcal (2) G-P(sol) polarization free energy of solvation -63.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds