Wall clock time and date at job start Mon Mar 30 2020 01:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47281 * 2 1 4 4 N 1.46906 * 109.47195 * 240.00084 * 2 1 3 5 5 C 1.46901 * 110.99645 * 84.99734 * 4 2 1 6 6 C 1.52998 * 109.47230 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47308 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00396 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99787 * 180.02562 * 7 6 5 10 10 N 1.31506 * 120.00374 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99592 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46695 * 90.00138 * 11 9 7 13 13 H 1.48495 * 109.46857 * 209.99710 * 11 9 7 14 14 H 1.48498 * 109.47499 * 330.00328 * 11 9 7 15 15 C 1.50699 * 109.47155 * 120.00469 * 2 1 3 16 16 C 1.38270 * 119.97533 * 79.72345 * 15 2 1 17 17 C 1.38217 * 120.06064 * 180.27493 * 16 15 2 18 18 C 1.38319 * 120.01180 * 359.97438 * 17 16 15 19 19 Cl 1.73594 * 120.02299 * 180.02562 * 18 17 16 20 20 C 1.38547 * 119.95053 * 0.02562 * 18 17 16 21 21 F 1.35106 * 120.02686 * 180.02562 * 20 18 17 22 22 C 1.38195 * 119.97710 * 259.99862 * 15 2 1 23 23 H 1.08994 * 109.47041 * 299.99733 * 1 2 3 24 24 H 1.09000 * 109.47041 * 59.99567 * 1 2 3 25 25 H 1.09001 * 109.46884 * 179.97438 * 1 2 3 26 26 H 1.00892 * 111.00583 * 208.95262 * 4 2 1 27 27 H 1.08996 * 109.47575 * 300.00587 * 5 4 2 28 28 H 1.08997 * 109.46756 * 60.00451 * 5 4 2 29 29 H 1.08996 * 109.47417 * 300.00802 * 6 5 4 30 30 H 1.09009 * 109.47061 * 60.00247 * 6 5 4 31 31 H 0.96996 * 120.00209 * 180.02562 * 10 9 7 32 32 H 1.08004 * 119.96720 * 0.25369 * 16 15 2 33 33 H 1.07999 * 119.99074 * 180.02562 * 17 16 15 34 34 H 1.07996 * 120.00042 * 359.74707 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5962 -0.5327 -3.5742 7 6 2.6612 0.4063 -4.7511 8 1 2.3659 1.4387 -4.6353 9 6 3.0975 -0.0527 -5.9759 10 7 3.4565 -1.3099 -6.1172 11 14 3.1773 1.1111 -7.4350 12 1 4.5134 1.7577 -7.4798 13 1 2.9542 0.3482 -8.6893 14 1 2.1279 2.1525 -7.2956 15 6 2.0324 -0.7105 1.2304 16 6 2.0612 -2.0924 1.2668 17 6 2.5162 -2.7459 2.3965 18 6 2.9439 -2.0177 3.4919 19 17 3.5161 -2.8382 4.9107 20 6 2.9152 -0.6330 3.4560 21 9 3.3331 0.0798 4.5249 22 6 2.4585 0.0195 2.3237 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.9173 -1.1205 -1.0289 27 1 1.0871 0.6164 -2.5525 28 1 2.7588 1.0462 -2.1182 29 1 3.5916 -0.9261 -3.3684 30 1 1.9201 -1.3566 -3.8032 31 1 3.7638 -1.6326 -6.9788 32 1 1.7275 -2.6617 0.4117 33 1 2.5387 -3.8254 2.4235 34 1 2.4354 1.0988 2.2946 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095985220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:38 Heat of formation + Delta-G solvation = -58.163542 kcal Electronic energy + Delta-G solvation = -17680.900108 eV Core-core repulsion = 14552.633981 eV Total energy + Delta-G solvation = -3128.266127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.04911 -40.63994 -38.12012 -37.28754 -35.30318 -33.28527 -31.84278 -30.53998 -29.51150 -26.27011 -24.49415 -24.08929 -22.35578 -21.49819 -18.69752 -18.42108 -17.73743 -17.42394 -16.86104 -16.75220 -16.38286 -15.83735 -15.33330 -14.96311 -14.62315 -14.35294 -14.19523 -13.98236 -13.78645 -13.30934 -12.99519 -12.95261 -12.84722 -12.73933 -12.41922 -12.31782 -12.09177 -11.96915 -11.66503 -11.36958 -11.22452 -10.54323 -10.04339 -9.67382 -9.32380 -8.18621 -6.29430 -0.14882 0.03630 0.93225 1.42076 1.42942 1.54029 2.35213 2.42089 2.91816 3.15300 3.28808 3.52412 3.70670 4.06145 4.15624 4.27345 4.40405 4.54423 4.58099 4.67235 4.73377 4.87118 4.95938 4.98389 5.08043 5.11301 5.33234 5.41543 5.49872 5.64447 5.71318 5.81735 6.15091 6.28559 6.52152 6.88367 7.39828 8.93293 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034889 B = 0.003175 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.343314 B = 8817.981883 C = 9060.537451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.121 3.879 3 H 0.056 0.944 4 N -0.685 5.685 5 C 0.085 3.915 6 C 0.032 3.968 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.002 3.998 10 N -0.931 5.931 11 Si 0.964 3.036 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.263 1.263 15 C -0.052 4.052 16 C -0.097 4.097 17 C -0.078 4.078 18 C -0.084 4.084 19 Cl -0.054 7.054 20 C 0.094 3.906 21 F -0.136 7.136 22 C -0.135 4.135 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.340 0.660 27 H 0.062 0.938 28 H 0.019 0.981 29 H -0.009 1.009 30 H -0.003 1.003 31 H 0.263 0.737 32 H 0.152 0.848 33 H 0.164 0.836 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.313 -0.327 20.395 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.012 3.988 3 H 0.074 0.926 4 N -0.316 5.316 5 C -0.044 4.044 6 C -0.005 4.005 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.197 4.197 10 N -0.571 5.571 11 Si 0.788 3.212 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.187 1.187 15 C -0.053 4.053 16 C -0.115 4.115 17 C -0.096 4.096 18 C -0.112 4.112 19 Cl -0.025 7.025 20 C 0.074 3.926 21 F -0.114 7.114 22 C -0.155 4.155 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.158 0.842 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.009 0.991 30 H 0.016 0.984 31 H 0.072 0.928 32 H 0.170 0.830 33 H 0.182 0.818 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.815 -0.729 20.278 20.647 hybrid contribution 1.186 0.881 -0.353 1.519 sum -2.629 0.152 19.925 20.099 Atomic orbital electron populations 1.21767 0.92488 1.02782 1.01909 1.20531 0.96951 0.95382 0.85963 0.92575 1.60675 1.33533 1.33555 1.03856 1.21824 0.99413 0.93156 0.90020 1.18910 0.94440 0.95101 0.92092 1.21630 1.43873 0.97020 0.95727 0.92157 1.25937 0.94894 0.96752 1.02074 1.70092 1.45262 1.16297 1.25425 0.85470 0.78815 0.78756 0.78138 1.19891 1.20849 1.18692 1.19932 0.96567 0.94207 0.94619 1.21302 0.98120 0.93825 0.98299 1.21230 0.96349 1.01768 0.90250 1.21161 1.06882 0.90977 0.92141 1.98380 1.87461 1.78337 1.38361 1.17468 1.01705 0.87923 0.85518 1.91515 1.87860 1.78111 1.53928 1.21123 1.01011 1.01983 0.91356 0.90818 0.92818 0.91899 0.84166 0.91904 0.96286 0.99112 0.98430 0.92796 0.83031 0.81835 0.82560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.39 71.98 0.68 -2.26 16 2 C 0.12 2.95 2.82 44.17 0.12 3.08 16 3 H 0.06 1.36 7.66 -2.39 -0.02 1.34 16 4 N -0.68 -21.54 5.70 -495.44 -2.82 -24.37 16 5 C 0.08 3.32 5.42 86.30 0.47 3.78 16 6 C 0.03 1.64 5.23 29.85 0.16 1.80 16 7 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.00 0.09 5.46 84.66 0.46 0.55 16 10 N -0.93 -56.01 13.29 21.45 0.28 -55.73 16 11 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 14 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 15 C -0.05 -1.13 4.71 -19.87 -0.09 -1.22 16 16 C -0.10 -1.96 9.01 22.27 0.20 -1.76 16 17 C -0.08 -1.43 9.83 22.28 0.22 -1.21 16 18 C -0.08 -1.74 6.33 22.36 0.14 -1.60 16 19 Cl -0.05 -1.07 28.62 -2.72 -0.08 -1.15 16 20 C 0.09 2.05 7.28 22.39 0.16 2.22 16 21 F -0.14 -3.16 16.84 44.97 0.76 -2.40 16 22 C -0.14 -2.76 9.65 22.31 0.22 -2.54 16 23 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.05 1.31 7.45 -2.39 -0.02 1.29 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 26 H 0.34 10.63 8.00 -89.70 -0.72 9.91 16 27 H 0.06 2.44 7.44 -2.39 -0.02 2.43 16 28 H 0.02 0.74 8.05 -2.39 -0.02 0.72 16 29 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.15 3.08 7.72 -2.91 -0.02 3.06 16 33 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 34 H 0.16 2.67 8.03 -2.91 -0.02 2.65 16 Total: -1.00 -61.64 310.56 3.52 -58.11 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.39 Total: 9.18 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 2.97 Total: -29.28 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -2.54 Total: -80.09 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.76 Total: -2.40 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -61.64 3.52 -58.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095985220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.051 kcal (2) G-P(sol) polarization free energy of solvation -61.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds