Wall clock time and date at job start Mon Mar 30 2020 01:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46986 * 2 1 4 4 C 1.46496 * 120.00628 * 270.00225 * 3 2 1 5 5 C 1.50699 * 109.47598 * 270.00465 * 4 3 2 6 6 H 1.08005 * 119.99628 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00538 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99774 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46761 * 60.00209 * 9 7 5 11 11 H 1.48496 * 109.46664 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47077 * 300.00223 * 9 7 5 13 13 C 1.34774 * 119.99828 * 90.00387 * 3 2 1 14 14 O 1.21279 * 120.00472 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00020 * 0.02562 * 13 3 2 16 16 N 1.46496 * 109.47106 * 179.97438 * 15 13 3 17 17 C 1.35051 * 126.03301 * 125.00097 * 16 15 13 18 18 C 1.35378 * 107.72184 * 179.97438 * 17 16 15 19 19 Cl 1.73604 * 126.04254 * 179.97438 * 18 17 16 20 20 C 1.39921 * 107.91113 * 359.97438 * 18 17 16 21 21 N 1.30850 * 108.21531 * 359.75918 * 20 18 17 22 22 H 1.08996 * 109.46936 * 299.99297 * 1 2 3 23 23 H 1.08997 * 109.47532 * 59.99922 * 1 2 3 24 24 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46898 * 240.00405 * 2 1 3 26 26 H 1.08993 * 109.47182 * 120.00744 * 2 1 3 27 27 H 1.09008 * 109.47096 * 29.99824 * 4 3 2 28 28 H 1.09003 * 109.47776 * 149.99700 * 4 3 2 29 29 H 0.97002 * 119.99965 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46953 * 299.99667 * 15 13 3 31 31 H 1.09000 * 109.47318 * 59.99264 * 15 13 3 32 32 H 1.07990 * 126.13914 * 359.93777 * 17 16 15 33 33 H 1.08009 * 125.89161 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3899 -2.8780 8 7 3.3490 3.1261 -3.6179 9 14 5.9134 2.0970 -3.4170 10 1 6.1415 0.6403 -3.5939 11 1 6.1607 2.7971 -4.7030 12 1 6.8406 2.6211 -2.3822 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1597 1.1673 15 6 1.9925 1.3058 2.4723 16 7 2.3103 2.2031 3.5858 17 6 1.4807 2.5389 4.5972 18 6 2.1499 3.3844 5.4157 19 17 1.5277 4.1091 6.8653 20 6 3.4318 3.5709 4.8867 21 7 3.5305 2.8590 3.7932 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.5816 1.6878 -2.0284 28 1 2.0954 3.1412 -1.1383 29 1 3.6750 3.5167 -4.4438 30 1 0.9446 1.0112 2.5303 31 1 2.6229 0.4185 2.5298 32 1 0.4655 2.1951 4.7290 33 1 4.2073 4.1922 5.3100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096413702.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:38 Heat of formation + Delta-G solvation = 18.717107 kcal Electronic energy + Delta-G solvation = -18434.463556 eV Core-core repulsion = 15329.451187 eV Total energy + Delta-G solvation = -3105.012370 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.30886 -40.58115 -37.35177 -37.00388 -35.04291 -34.20821 -31.63576 -31.07289 -29.72427 -27.92906 -24.96286 -24.16463 -22.39732 -22.16012 -20.07734 -18.68872 -18.48658 -18.06932 -17.09367 -16.60469 -16.13327 -15.83436 -15.34626 -15.10796 -14.73037 -14.49343 -14.39442 -14.17929 -13.62829 -13.44157 -13.23947 -13.07728 -12.69982 -12.62483 -12.52611 -12.30874 -12.16244 -11.87388 -11.75637 -11.41405 -11.01673 -10.66404 -10.38627 -9.48839 -9.39230 -8.24913 -6.39343 0.72632 0.99985 1.34087 1.38945 1.45690 1.64757 1.70508 1.79833 2.26104 2.40108 3.05092 3.45998 3.65514 3.83838 3.99029 4.06997 4.22359 4.43184 4.52027 4.63043 4.66081 4.93100 5.00566 5.06895 5.19451 5.37052 5.43116 5.54587 5.77661 5.85866 6.03826 6.57714 6.66100 6.73495 7.25180 7.41159 8.81963 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.004466 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.250215 B = 6267.989221 C = 7013.241943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.598 5.598 4 C 0.265 3.735 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.257 1.257 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.481 3.519 14 O -0.579 6.579 15 C 0.124 3.876 16 N -0.359 5.359 17 C 0.083 3.917 18 C -0.200 4.200 19 Cl -0.036 7.036 20 C 0.048 3.952 21 N -0.306 5.306 22 H 0.068 0.932 23 H 0.035 0.965 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.026 0.974 28 H -0.008 1.008 29 H 0.267 0.733 30 H 0.174 0.826 31 H 0.139 0.861 32 H 0.226 0.774 33 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.994 -8.624 17.378 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.330 5.330 4 C 0.144 3.856 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.182 1.182 11 H -0.203 1.203 12 H -0.208 1.208 13 C 0.268 3.732 14 O -0.458 6.458 15 C 0.000 4.000 16 N -0.141 5.141 17 C -0.064 4.064 18 C -0.239 4.239 19 Cl -0.008 7.008 20 C -0.139 4.139 21 N -0.126 5.126 22 H 0.087 0.913 23 H 0.054 0.946 24 H 0.117 0.883 25 H 0.091 0.909 26 H 0.126 0.874 27 H 0.044 0.956 28 H 0.010 0.990 29 H 0.076 0.924 30 H 0.192 0.808 31 H 0.157 0.843 32 H 0.243 0.757 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.137 -8.339 16.205 19.572 hybrid contribution 0.474 0.826 -0.102 0.958 sum -6.663 -7.513 16.103 18.978 Atomic orbital electron populations 1.22189 0.94075 1.03830 1.01996 1.21890 0.95646 0.80800 1.04523 1.48252 1.63748 1.15305 1.05720 1.18667 0.95211 0.91347 0.80378 1.21690 0.98014 1.32097 1.06431 0.92950 1.25829 1.02245 0.94471 0.96495 1.70037 1.37782 1.34140 1.14833 0.85514 0.79143 0.79176 0.77272 1.18161 1.20282 1.20769 1.21220 0.78389 0.86998 0.86607 1.90737 1.46807 1.20647 1.87590 1.21956 1.07146 0.90855 0.80013 1.48087 1.09633 1.36924 1.19470 1.22887 0.98518 0.97265 0.87755 1.20835 0.96165 1.09710 0.97178 1.98308 1.86682 1.82105 1.33706 1.24291 0.97708 0.99324 0.92559 1.77664 1.04429 1.12673 1.17874 0.91345 0.94567 0.88294 0.90904 0.87395 0.95603 0.98982 0.92412 0.80838 0.84342 0.75729 0.77968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 10.24 71.98 0.74 -2.45 16 2 C 0.09 2.41 5.93 86.38 0.51 2.92 16 3 N -0.60 -23.71 2.46 -826.16 -2.03 -25.74 16 4 C 0.27 14.14 5.16 85.63 0.44 14.58 16 5 C -0.54 -31.45 9.39 25.60 0.24 -31.21 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.50 5.46 84.66 0.46 0.97 16 8 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 9 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 10 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 13 C 0.48 19.05 7.70 87.66 0.68 19.73 16 14 O -0.58 -30.61 15.30 -3.02 -0.05 -30.65 16 15 C 0.12 2.99 5.54 85.64 0.47 3.47 16 16 N -0.36 -10.24 3.40 -351.67 -1.19 -11.44 16 17 C 0.08 1.80 11.43 83.54 0.96 2.75 16 18 C -0.20 -4.87 6.65 22.02 0.15 -4.73 16 19 Cl -0.04 -0.73 29.30 -2.72 -0.08 -0.81 16 20 C 0.05 1.40 12.02 85.25 1.02 2.42 16 21 N -0.31 -10.93 11.66 -56.98 -0.66 -11.59 16 22 H 0.07 1.08 7.22 -2.39 -0.02 1.07 16 23 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.07 2.10 8.07 -2.38 -0.02 2.09 16 26 H 0.11 1.85 6.44 -2.39 -0.02 1.83 16 27 H 0.03 1.39 8.07 -2.38 -0.02 1.37 16 28 H -0.01 -0.50 7.42 -2.39 -0.02 -0.52 16 29 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.17 2.25 7.12 -2.39 -0.02 2.23 16 31 H 0.14 2.64 7.40 -2.39 -0.02 2.63 16 32 H 0.23 2.56 8.06 -2.92 -0.02 2.54 16 33 H 0.20 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -83.32 306.04 5.08 -78.24 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: 1.12 Total: 2.34 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 5.67 Total: 8.45 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -3.60 Total: -105.10 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -83.32 5.08 -78.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096413702.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.954 kcal (2) G-P(sol) polarization free energy of solvation -83.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds