Wall clock time and date at job start Mon Mar 30 2020 01:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46936 * 2 1 4 4 N 1.46900 * 109.47170 * 239.99388 * 2 1 3 5 5 C 1.46899 * 110.99601 * 85.00571 * 4 2 1 6 6 C 1.52999 * 109.47165 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47095 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00004 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99671 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00224 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99545 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46728 * 90.00195 * 11 9 7 13 13 H 1.48496 * 109.47006 * 209.99724 * 11 9 7 14 14 H 1.48501 * 109.47568 * 330.00227 * 11 9 7 15 15 C 1.50703 * 109.46538 * 119.99798 * 2 1 3 16 16 C 1.38268 * 119.96559 * 79.72739 * 15 2 1 17 17 C 1.38195 * 120.04530 * 180.27543 * 16 15 2 18 18 C 1.38449 * 119.99087 * 0.02562 * 17 16 15 19 19 F 1.35102 * 120.03214 * 179.97438 * 18 17 16 20 20 C 1.38555 * 119.93638 * 359.97438 * 18 17 16 21 21 Cl 1.73599 * 120.02179 * 180.02562 * 20 18 17 22 22 C 1.38215 * 119.97183 * 259.99822 * 15 2 1 23 23 H 1.08999 * 109.47691 * 300.00093 * 1 2 3 24 24 H 1.09004 * 109.46764 * 59.99960 * 1 2 3 25 25 H 1.09003 * 109.47451 * 179.97438 * 1 2 3 26 26 H 1.00898 * 111.00006 * 208.95615 * 4 2 1 27 27 H 1.09002 * 109.47478 * 299.99823 * 5 4 2 28 28 H 1.09005 * 109.47335 * 59.99563 * 5 4 2 29 29 H 1.09004 * 109.46965 * 299.99476 * 6 5 4 30 30 H 1.08993 * 109.47144 * 59.99872 * 6 5 4 31 31 H 0.96997 * 119.99886 * 180.02562 * 10 9 7 32 32 H 1.07994 * 119.98184 * 0.27398 * 16 15 2 33 33 H 1.08001 * 120.00948 * 180.02562 * 17 16 15 34 34 H 1.07995 * 119.98851 * 359.72713 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0826 0.2224 -2.3468 6 6 2.5951 -0.5333 -3.5744 7 6 2.6602 0.4056 -4.7514 8 1 2.3651 1.4380 -4.6355 9 6 3.0966 -0.0535 -5.9761 10 7 3.4564 -1.3106 -6.1170 11 14 3.1766 1.1101 -7.4352 12 1 4.5128 1.7565 -7.4800 13 1 2.9535 0.3473 -8.6895 14 1 2.1273 2.1517 -7.2959 15 6 2.0322 -0.7104 1.2306 16 6 2.0609 -2.0923 1.2668 17 6 2.5158 -2.7455 2.3965 18 6 2.9426 -2.0160 3.4931 19 9 3.3869 -2.6537 4.5981 20 6 2.9135 -0.6312 3.4561 21 17 3.4488 0.2857 4.8296 22 6 2.4584 0.0199 2.3239 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 2.9173 -1.1206 -1.0286 27 1 1.0872 0.6162 -2.5526 28 1 2.7590 1.0461 -2.1181 29 1 3.5905 -0.9274 -3.3690 30 1 1.9184 -1.3566 -3.8029 31 1 3.7638 -1.6334 -6.9785 32 1 1.7277 -2.6617 0.4118 33 1 2.5384 -3.8249 2.4241 34 1 2.4354 1.0992 2.2942 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096491169.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:22 Heat of formation + Delta-G solvation = -58.181379 kcal Electronic energy + Delta-G solvation = -17680.022428 eV Core-core repulsion = 14551.755528 eV Total energy + Delta-G solvation = -3128.266900 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.03381 -40.64904 -38.05422 -37.32993 -35.29689 -33.22721 -32.04251 -30.43676 -29.45588 -26.23608 -24.42090 -24.17712 -22.33710 -21.47437 -18.88359 -18.49442 -17.73092 -17.44090 -16.84077 -16.46858 -16.24219 -15.77555 -15.33233 -14.94011 -14.65921 -14.40911 -14.29044 -14.10571 -13.80404 -13.42799 -12.94131 -12.88935 -12.79543 -12.52418 -12.40110 -12.32494 -12.26599 -11.95660 -11.65397 -11.36614 -11.21894 -10.54072 -10.05148 -9.65449 -9.31173 -8.18419 -6.29187 -0.12630 0.01925 0.91096 1.42281 1.43142 1.54242 2.35266 2.42364 3.00911 3.15542 3.26331 3.53829 3.66198 4.08289 4.16690 4.25150 4.42768 4.57734 4.58278 4.68634 4.75285 4.82982 4.94501 5.01411 5.09985 5.12148 5.33482 5.42138 5.50156 5.64151 5.71778 5.82146 6.15931 6.29453 6.53234 6.88641 7.40078 8.93510 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032910 B = 0.003225 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.600715 B = 8679.345910 C = 8838.983747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.124 3.876 3 H 0.056 0.944 4 N -0.685 5.685 5 C 0.085 3.915 6 C 0.032 3.968 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.001 3.999 10 N -0.931 5.931 11 Si 0.964 3.036 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.263 1.263 15 C -0.083 4.083 16 C -0.067 4.067 17 C -0.135 4.135 18 C 0.091 3.909 19 F -0.136 7.136 20 C -0.082 4.082 21 Cl -0.054 7.054 22 C -0.076 4.076 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.340 0.660 27 H 0.062 0.938 28 H 0.019 0.981 29 H -0.010 1.010 30 H -0.003 1.003 31 H 0.263 0.737 32 H 0.152 0.848 33 H 0.166 0.834 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 1.038 20.399 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.014 3.986 3 H 0.074 0.926 4 N -0.317 5.317 5 C -0.044 4.044 6 C -0.006 4.006 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.197 4.197 10 N -0.571 5.571 11 Si 0.788 3.212 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.187 1.187 15 C -0.084 4.084 16 C -0.085 4.085 17 C -0.154 4.154 18 C 0.071 3.929 19 F -0.114 7.114 20 C -0.109 4.109 21 Cl -0.025 7.025 22 C -0.095 4.095 23 H 0.092 0.908 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.158 0.842 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.009 0.991 30 H 0.015 0.985 31 H 0.072 0.928 32 H 0.170 0.830 33 H 0.183 0.817 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.828 0.740 20.280 20.652 hybrid contribution 1.184 0.750 -0.354 1.446 sum -2.644 1.490 19.927 20.156 Atomic orbital electron populations 1.21771 0.92643 1.02691 1.01858 1.20488 0.96819 0.95351 0.85908 0.92598 1.60677 1.33495 1.33596 1.03926 1.21821 0.99398 0.93162 0.90019 1.18915 0.94436 0.95104 0.92127 1.21632 1.43840 0.97015 0.95717 0.92145 1.25938 0.94895 0.96748 1.02081 1.70097 1.45276 1.16321 1.25418 0.85468 0.78817 0.78756 0.78128 1.19894 1.20868 1.18674 1.20008 0.99004 0.94210 0.95145 1.21226 0.95664 0.93862 0.97741 1.21384 1.00431 1.02166 0.91430 1.17640 1.01387 0.88811 0.85043 1.91514 1.86973 1.81842 1.51086 1.21016 1.07125 0.90519 0.92267 1.98380 1.88700 1.73397 1.42041 1.20973 0.96876 1.01550 0.90143 0.90810 0.92914 0.92005 0.84207 0.91941 0.96256 0.99122 0.98454 0.92810 0.83004 0.81686 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.39 71.98 0.68 -2.26 16 2 C 0.12 3.00 2.82 44.17 0.12 3.12 16 3 H 0.06 1.34 7.66 -2.39 -0.02 1.32 16 4 N -0.69 -21.54 5.70 -495.45 -2.82 -24.36 16 5 C 0.08 3.32 5.42 86.30 0.47 3.79 16 6 C 0.03 1.63 5.23 29.85 0.16 1.78 16 7 C -0.54 -30.33 9.11 25.60 0.23 -30.09 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.00 0.08 5.46 84.66 0.46 0.54 16 10 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 11 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 14 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 15 C -0.08 -1.76 4.71 -19.86 -0.09 -1.85 16 16 C -0.07 -1.35 9.01 22.27 0.20 -1.15 16 17 C -0.14 -2.54 10.03 22.31 0.22 -2.31 16 18 C 0.09 1.95 7.28 22.40 0.16 2.11 16 19 F -0.14 -3.08 16.84 44.97 0.76 -2.32 16 20 C -0.08 -1.72 6.33 22.36 0.14 -1.58 16 21 Cl -0.05 -1.10 28.62 -2.72 -0.08 -1.18 16 22 C -0.08 -1.51 9.45 22.28 0.21 -1.30 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.29 7.45 -2.38 -0.02 1.27 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.34 10.60 8.00 -89.70 -0.72 9.88 16 27 H 0.06 2.43 7.44 -2.39 -0.02 2.41 16 28 H 0.02 0.75 8.06 -2.38 -0.02 0.73 16 29 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.15 3.08 7.72 -2.91 -0.02 3.06 16 33 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 34 H 0.16 2.57 8.03 -2.91 -0.02 2.55 16 Total: -1.00 -61.67 310.56 3.52 -58.15 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.39 Total: 9.06 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 2.97 Total: -29.20 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.54 Total: -80.13 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.76 Total: -2.32 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -61.67 3.52 -58.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096491169.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.036 kcal (2) G-P(sol) polarization free energy of solvation -61.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds