Wall clock time and date at job start Mon Mar 30 2020 01:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47566 * 2 1 4 4 N 1.46903 * 109.46748 * 239.99482 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99819 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00046 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99933 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99912 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47017 * 89.99937 * 11 9 7 13 13 H 1.48507 * 109.47241 * 209.99826 * 11 9 7 14 14 H 1.48500 * 109.47209 * 329.99791 * 11 9 7 15 15 C 1.50706 * 109.46748 * 120.00132 * 2 1 3 16 16 C 1.38246 * 119.98311 * 99.99950 * 15 2 1 17 17 C 1.38183 * 120.03724 * 179.97438 * 16 15 2 18 18 C 1.38484 * 120.00159 * 359.96092 * 17 16 15 19 19 F 1.35101 * 120.02128 * 179.97438 * 18 17 16 20 20 C 1.38423 * 119.96379 * 0.02562 * 18 17 16 21 21 C 1.38339 * 119.95660 * 359.77620 * 20 18 17 22 22 Cl 1.73599 * 119.99811 * 180.25364 * 21 20 18 23 23 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46732 * 300.00617 * 1 2 3 25 25 H 1.08996 * 109.46768 * 60.00165 * 1 2 3 26 26 H 1.00895 * 111.00497 * 321.04431 * 4 2 1 27 27 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 28 28 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 29 29 H 1.09001 * 109.46801 * 300.00064 * 6 5 4 30 30 H 1.09001 * 109.46998 * 59.99660 * 6 5 4 31 31 H 0.97007 * 120.00011 * 180.02562 * 10 9 7 32 32 H 1.08004 * 119.97859 * 359.97429 * 16 15 2 33 33 H 1.07997 * 119.99811 * 179.97438 * 17 16 15 34 34 H 1.08001 * 120.01792 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5962 -0.5331 -3.5742 7 6 2.6600 0.4054 -4.7515 8 1 2.3643 1.4377 -4.6358 9 6 3.0971 -0.0535 -5.9760 10 7 3.1533 0.7657 -7.0033 11 14 3.6093 -1.8387 -6.1758 12 1 2.4304 -2.6506 -6.5710 13 1 4.6542 -1.9393 -7.2263 14 1 4.1506 -2.3454 -4.8892 15 6 2.0323 -0.7105 1.2305 16 6 2.4586 -2.0228 1.1450 17 6 2.9198 -2.6751 2.2724 18 6 2.9560 -2.0141 3.4888 19 9 3.4064 -2.6517 4.5914 20 6 2.5294 -0.7000 3.5745 21 6 2.0718 -0.0472 2.4439 22 17 1.5428 1.6029 2.5488 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.4496 -1.4980 -1.4100 27 1 2.7589 1.0460 -2.1182 28 1 1.0871 0.6161 -2.5525 29 1 3.5916 -0.9266 -3.3682 30 1 1.9200 -1.3570 -3.8029 31 1 3.4604 0.4428 -7.8649 32 1 2.4311 -2.5384 0.1963 33 1 3.2523 -3.7004 2.2049 34 1 2.5577 -0.1835 4.5225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096491909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:27 Heat of formation + Delta-G solvation = -37.551768 kcal Electronic energy + Delta-G solvation = -17907.111332 eV Core-core repulsion = 14779.738999 eV Total energy + Delta-G solvation = -3127.372333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.12450 -39.73670 -36.79235 -36.56464 -33.45033 -31.77350 -31.16057 -29.48745 -28.17381 -24.46452 -23.62801 -22.86900 -20.78100 -20.43653 -18.02934 -16.99444 -16.60114 -16.14132 -15.83390 -15.07735 -14.77819 -14.55814 -14.10107 -14.05742 -13.80251 -13.30703 -13.17161 -12.75709 -12.60547 -12.47231 -11.77700 -11.60869 -11.50526 -11.40516 -11.22436 -11.03382 -10.84573 -10.14594 -9.92732 -9.78260 -9.25857 -9.16888 -8.71791 -8.55751 -8.07759 -6.06260 -4.04969 0.80018 0.92077 1.85363 3.25656 3.30080 3.38138 3.42882 4.03110 4.27863 4.44191 4.52689 4.68861 4.76753 5.08496 5.18492 5.20798 5.28298 5.40666 5.55291 5.69487 5.78867 5.85848 5.99978 6.05701 6.15190 6.21435 6.29434 6.54810 6.71962 7.06151 7.32031 7.51845 7.66849 7.83148 8.50605 8.97751 9.55878 11.07066 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.004141 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.329200 B = 6759.678475 C = 7582.112481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.117 3.883 3 H 0.095 0.905 4 N -0.688 5.688 5 C 0.074 3.926 6 C -0.010 4.010 7 C -0.522 4.522 8 H 0.071 0.929 9 C 0.067 3.933 10 N -0.903 5.903 11 Si 0.881 3.119 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.263 1.263 15 C -0.063 4.063 16 C -0.055 4.055 17 C -0.150 4.150 18 C 0.100 3.900 19 F -0.138 7.138 20 C -0.149 4.149 21 C -0.010 4.010 22 Cl -0.057 7.057 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.337 0.663 27 H 0.066 0.934 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.009 0.991 31 H 0.263 0.737 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.873 -4.881 21.600 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.006 3.994 3 H 0.113 0.887 4 N -0.318 5.318 5 C -0.054 4.054 6 C -0.047 4.047 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.134 4.134 10 N -0.542 5.542 11 Si 0.709 3.291 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.188 1.188 15 C -0.065 4.065 16 C -0.073 4.073 17 C -0.169 4.169 18 C 0.081 3.919 19 F -0.116 7.116 20 C -0.169 4.169 21 C -0.037 4.037 22 Cl -0.028 7.028 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.155 0.845 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.183 -4.647 21.606 22.328 hybrid contribution -0.575 -0.716 -0.205 0.941 sum -3.758 -5.364 21.401 22.381 Atomic orbital electron populations 1.22460 0.95836 1.02391 1.02898 1.20454 0.92966 0.97860 0.88096 0.88689 1.60705 1.56219 1.10469 1.04379 1.22002 0.99079 0.95012 0.89275 1.19547 0.96556 0.96041 0.92588 1.21057 1.44362 0.97803 0.92838 0.91104 1.25005 0.94968 0.97623 0.95791 1.69915 1.47684 1.35384 1.01239 0.86752 0.78618 0.85590 0.78181 1.20404 1.21439 1.18773 1.19914 0.98682 0.94463 0.93416 1.20949 0.94714 0.93175 0.98457 1.21309 1.02695 1.01524 0.91344 1.17450 1.00267 0.90872 0.83345 1.91508 1.86816 1.81602 1.51699 1.20852 1.03062 0.93806 0.99175 1.20453 1.02254 0.86885 0.94139 1.98379 1.88608 1.17514 1.98324 0.92318 0.91922 0.91501 0.84508 0.91561 0.95583 0.95630 0.97276 0.92707 0.83106 0.84222 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.10 37.16 0.34 -1.70 16 2 C 0.12 1.52 2.25 -68.86 -0.16 1.36 16 3 H 0.10 1.33 7.00 -51.93 -0.36 0.97 16 4 N -0.69 -10.42 5.08 -107.95 -0.55 -10.97 16 5 C 0.07 1.41 5.42 -3.82 -0.02 1.39 16 6 C -0.01 -0.22 4.30 -27.88 -0.12 -0.34 16 7 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 10 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 11 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 15 C -0.06 -0.76 5.09 -104.58 -0.53 -1.29 16 16 C -0.05 -0.61 9.32 -39.60 -0.37 -0.98 16 17 C -0.15 -1.53 10.03 -39.51 -0.40 -1.93 16 18 C 0.10 1.08 7.30 -39.42 -0.29 0.79 16 19 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 20 C -0.15 -1.57 9.81 -39.48 -0.39 -1.96 16 21 C -0.01 -0.11 6.31 -39.51 -0.25 -0.36 16 22 Cl -0.06 -0.62 26.64 -51.86 -1.38 -2.01 16 23 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 24 H 0.06 0.67 7.29 -51.93 -0.38 0.29 16 25 H 0.07 0.82 7.45 -51.93 -0.39 0.43 16 26 H 0.34 4.67 8.01 -39.29 -0.31 4.35 16 27 H 0.07 1.31 8.06 -51.93 -0.42 0.89 16 28 H 0.03 0.49 7.44 -51.93 -0.39 0.10 16 29 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 30 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.15 1.62 6.83 -52.48 -0.36 1.26 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 302.62 15.07 4.56 4.56 Total: -1.00 -29.73 302.62 -8.06 -37.79 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.23 Total: 0.38 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.61 Total: -18.17 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.22 Total: -37.89 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.38 Total: -2.01 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.73 -8.06 -37.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096491909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.238 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds