Wall clock time and date at job start Mon Mar 30 2020 01:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47566 * 2 1 4 4 N 1.46903 * 109.46748 * 239.99482 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99819 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00046 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99933 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99912 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47017 * 89.99937 * 11 9 7 13 13 H 1.48507 * 109.47241 * 209.99826 * 11 9 7 14 14 H 1.48500 * 109.47209 * 329.99791 * 11 9 7 15 15 C 1.50706 * 109.46748 * 120.00132 * 2 1 3 16 16 C 1.38246 * 119.98311 * 99.99950 * 15 2 1 17 17 C 1.38183 * 120.03724 * 179.97438 * 16 15 2 18 18 C 1.38484 * 120.00159 * 359.96092 * 17 16 15 19 19 F 1.35101 * 120.02128 * 179.97438 * 18 17 16 20 20 C 1.38423 * 119.96379 * 0.02562 * 18 17 16 21 21 C 1.38339 * 119.95660 * 359.77620 * 20 18 17 22 22 Cl 1.73599 * 119.99811 * 180.25364 * 21 20 18 23 23 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46732 * 300.00617 * 1 2 3 25 25 H 1.08996 * 109.46768 * 60.00165 * 1 2 3 26 26 H 1.00895 * 111.00497 * 321.04431 * 4 2 1 27 27 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 28 28 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 29 29 H 1.09001 * 109.46801 * 300.00064 * 6 5 4 30 30 H 1.09001 * 109.46998 * 59.99660 * 6 5 4 31 31 H 0.97007 * 120.00011 * 180.02562 * 10 9 7 32 32 H 1.08004 * 119.97859 * 359.97429 * 16 15 2 33 33 H 1.07997 * 119.99811 * 179.97438 * 17 16 15 34 34 H 1.08001 * 120.01792 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5962 -0.5331 -3.5742 7 6 2.6600 0.4054 -4.7515 8 1 2.3643 1.4377 -4.6358 9 6 3.0971 -0.0535 -5.9760 10 7 3.1533 0.7657 -7.0033 11 14 3.6093 -1.8387 -6.1758 12 1 2.4304 -2.6506 -6.5710 13 1 4.6542 -1.9393 -7.2263 14 1 4.1506 -2.3454 -4.8892 15 6 2.0323 -0.7105 1.2305 16 6 2.4586 -2.0228 1.1450 17 6 2.9198 -2.6751 2.2724 18 6 2.9560 -2.0141 3.4888 19 9 3.4064 -2.6517 4.5914 20 6 2.5294 -0.7000 3.5745 21 6 2.0718 -0.0472 2.4439 22 17 1.5428 1.6029 2.5488 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.4496 -1.4980 -1.4100 27 1 2.7589 1.0460 -2.1182 28 1 1.0871 0.6161 -2.5525 29 1 3.5916 -0.9266 -3.3682 30 1 1.9200 -1.3570 -3.8029 31 1 3.4604 0.4428 -7.8649 32 1 2.4311 -2.5384 0.1963 33 1 3.2523 -3.7004 2.2049 34 1 2.5577 -0.1835 4.5225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096491909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:26 Heat of formation + Delta-G solvation = -54.622270 kcal Electronic energy + Delta-G solvation = -17907.851564 eV Core-core repulsion = 14779.738999 eV Total energy + Delta-G solvation = -3128.112566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.96129 -40.63444 -37.94973 -37.46240 -35.29897 -33.42297 -31.98645 -30.80559 -29.40110 -26.08014 -24.57691 -23.91229 -22.25623 -21.70022 -18.95353 -18.87285 -17.67038 -17.19404 -16.67449 -16.28813 -16.18346 -15.78892 -15.45188 -15.07944 -14.78675 -14.70156 -14.30149 -14.15831 -13.82274 -13.80478 -13.19510 -12.88012 -12.74442 -12.46918 -12.29976 -12.11622 -11.94279 -11.87667 -11.74134 -11.49333 -11.39598 -10.74351 -9.99169 -9.61655 -9.32673 -8.27381 -6.32033 -0.04474 0.08624 1.00347 1.39227 1.42271 1.54694 2.39378 2.41182 3.08791 3.12300 3.21937 3.67912 3.78584 3.95775 4.16315 4.20915 4.27634 4.47696 4.54852 4.58951 4.66739 4.86798 4.92436 4.96721 4.99667 5.16602 5.20118 5.25387 5.40866 5.53276 5.67310 5.72593 6.11074 6.27564 6.53326 6.77217 7.33020 8.89409 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.004141 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.329200 B = 6759.678475 C = 7582.112481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.120 3.880 3 H 0.082 0.918 4 N -0.682 5.682 5 C 0.089 3.911 6 C -0.004 4.004 7 C -0.534 4.534 8 H 0.030 0.970 9 C 0.004 3.996 10 N -0.953 5.953 11 Si 0.955 3.045 12 H -0.265 1.265 13 H -0.288 1.288 14 H -0.244 1.244 15 C -0.073 4.073 16 C -0.060 4.060 17 C -0.144 4.144 18 C 0.094 3.906 19 F -0.139 7.139 20 C -0.148 4.148 21 C -0.017 4.017 22 Cl -0.057 7.057 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.348 0.652 27 H 0.052 0.948 28 H 0.022 0.978 29 H 0.024 0.976 30 H 0.022 0.978 31 H 0.266 0.734 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.851 -7.150 23.106 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.010 3.990 3 H 0.100 0.900 4 N -0.314 5.314 5 C -0.040 4.040 6 C -0.042 4.042 7 C -0.572 4.572 8 H 0.048 0.952 9 C -0.193 4.193 10 N -0.594 5.594 11 Si 0.778 3.222 12 H -0.190 1.190 13 H -0.214 1.214 14 H -0.167 1.167 15 C -0.075 4.075 16 C -0.078 4.078 17 C -0.162 4.162 18 C 0.075 3.925 19 F -0.118 7.118 20 C -0.167 4.167 21 C -0.044 4.044 22 Cl -0.028 7.028 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.167 0.833 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.174 0.826 33 H 0.179 0.821 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.176 -6.920 23.147 24.367 hybrid contribution -0.598 0.079 -0.615 0.862 sum -3.775 -6.841 22.531 23.847 Atomic orbital electron populations 1.22397 0.94639 1.03185 1.02809 1.20396 0.93921 0.97144 0.87552 0.90011 1.60560 1.57167 1.10105 1.03522 1.21624 0.98294 0.94742 0.89322 1.19431 0.96919 0.95551 0.92256 1.21434 1.43726 0.97072 0.94984 0.95165 1.26022 0.95007 1.02936 0.95311 1.70077 1.49264 1.38025 1.02024 0.85593 0.78569 0.79212 0.78849 1.19005 1.21386 1.16723 1.19840 0.99654 0.94995 0.93012 1.21033 0.94831 0.92862 0.99057 1.21513 1.01652 1.02401 0.90674 1.17574 1.00373 0.91032 0.83542 1.91508 1.86853 1.81620 1.51822 1.21011 1.02313 0.93857 0.99538 1.20491 1.02702 0.86989 0.94260 1.98380 1.88625 1.17516 1.98320 0.91071 0.91094 0.92485 0.83287 0.92943 0.95926 0.95763 0.95922 0.92532 0.82564 0.82111 0.82520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 9.10 71.98 0.65 -3.03 16 2 C 0.12 2.96 2.25 44.17 0.10 3.06 16 3 H 0.08 2.25 7.00 -2.39 -0.02 2.23 16 4 N -0.68 -19.54 5.08 -495.44 -2.52 -22.06 16 5 C 0.09 3.33 5.42 86.31 0.47 3.80 16 6 C 0.00 -0.17 4.30 29.85 0.13 -0.04 16 7 C -0.53 -30.47 9.66 25.60 0.25 -30.22 16 8 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 9 C 0.00 0.22 5.47 84.65 0.46 0.69 16 10 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 11 Si 0.95 43.66 27.47 68.60 1.88 45.55 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 14 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 15 C -0.07 -1.63 5.09 -19.84 -0.10 -1.73 16 16 C -0.06 -1.18 9.32 22.26 0.21 -0.98 16 17 C -0.14 -2.55 10.03 22.32 0.22 -2.33 16 18 C 0.09 1.82 7.30 22.37 0.16 1.98 16 19 F -0.14 -2.78 17.27 44.97 0.78 -2.00 16 20 C -0.15 -2.81 9.81 22.34 0.22 -2.60 16 21 C -0.02 -0.36 6.31 22.32 0.14 -0.22 16 22 Cl -0.06 -1.19 26.64 -2.72 -0.07 -1.26 16 23 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 24 H 0.07 1.41 7.29 -2.39 -0.02 1.39 16 25 H 0.06 1.34 7.45 -2.39 -0.02 1.32 16 26 H 0.35 8.77 8.01 -89.70 -0.72 8.05 16 27 H 0.05 2.09 8.06 -2.39 -0.02 2.07 16 28 H 0.02 0.85 7.44 -2.39 -0.02 0.84 16 29 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 30 H 0.02 0.96 7.57 -2.39 -0.02 0.95 16 31 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 32 H 0.16 2.90 6.83 -2.91 -0.02 2.89 16 33 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -64.01 302.62 3.63 -60.39 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.34 Total: 10.46 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 2.91 Total: -31.62 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -2.22 Total: -81.51 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.55 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.07 Total: -1.26 kcal Total: -64.01 3.63 -60.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096491909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.765 kcal (2) G-P(sol) polarization free energy of solvation -64.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds