Wall clock time and date at job start Mon Mar 30 2020 01:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99563 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00432 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46616 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47104 * 119.99966 * 11 9 7 14 14 H 1.48489 * 109.47200 * 240.00246 * 11 9 7 15 15 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 16 16 C 1.38250 * 119.98568 * 264.73097 * 15 2 1 17 17 C 1.38181 * 120.03795 * 179.72543 * 16 15 2 18 18 C 1.38481 * 120.00342 * 0.54550 * 17 16 15 19 19 F 1.35105 * 120.02233 * 179.74883 * 18 17 16 20 20 C 1.38416 * 119.96197 * 359.72416 * 18 17 16 21 21 C 1.38335 * 119.96278 * 0.02562 * 20 18 17 22 22 Cl 1.73598 * 120.00459 * 180.02562 * 21 20 18 23 23 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 24 24 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 25 25 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 26 26 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 27 27 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 28 28 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 29 29 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 30 30 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 31 31 H 0.97002 * 119.99731 * 180.02562 * 10 9 7 32 32 H 1.08000 * 119.97433 * 359.97438 * 16 15 2 33 33 H 1.08004 * 119.99698 * 180.24748 * 17 16 15 34 34 H 1.08001 * 120.02224 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6600 0.4058 4.7515 8 1 2.3648 1.4382 4.6356 9 6 3.0954 -0.0534 5.9765 10 7 3.4544 -1.3107 6.1176 11 14 3.1767 1.1106 7.4352 12 1 2.7223 2.4610 7.0168 13 1 2.2966 0.6068 8.5201 14 1 4.5750 1.1891 7.9285 15 6 2.0323 -0.7105 -1.2304 16 6 2.3663 -2.0505 -1.1665 17 6 2.8216 -2.7044 -2.2954 18 6 2.9544 -2.0148 -3.4889 19 9 3.4044 -2.6526 -4.5917 20 6 2.6253 -0.6718 -3.5516 21 6 2.1647 -0.0198 -2.4218 22 17 1.7510 1.6643 -2.4994 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.4494 -1.4979 1.4101 27 1 2.7588 1.0462 2.1182 28 1 1.0870 0.6163 2.5526 29 1 1.9183 -1.3565 3.8030 30 1 3.5903 -0.9272 3.3692 31 1 3.7603 -1.6339 6.9796 32 1 2.2674 -2.5874 -0.2346 33 1 3.0786 -3.7523 -2.2457 34 1 2.7281 -0.1331 -4.4820 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096491910.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:29 Heat of formation + Delta-G solvation = -41.376964 kcal Electronic energy + Delta-G solvation = -17847.033814 eV Core-core repulsion = 14719.495608 eV Total energy + Delta-G solvation = -3127.538206 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.07224 -39.66961 -36.70806 -36.48722 -33.43466 -31.63361 -31.09984 -29.23282 -27.85197 -24.40173 -23.60748 -22.90100 -20.68355 -20.60417 -17.97760 -16.82088 -16.30915 -16.01316 -15.77935 -15.02979 -14.66440 -14.46756 -14.32920 -13.98254 -13.75097 -13.28258 -13.02719 -12.64611 -12.46804 -12.16022 -11.66472 -11.55852 -11.41128 -11.23087 -11.09302 -10.96461 -10.75548 -10.52909 -10.08358 -9.44421 -9.16849 -9.11013 -8.65743 -8.38030 -7.93805 -6.02220 -4.04652 0.85927 0.97846 1.90136 3.29948 3.31531 3.37607 3.41410 4.08655 4.33231 4.48899 4.58260 4.75631 4.85145 5.14575 5.25124 5.26723 5.34263 5.46814 5.60559 5.74899 5.85080 5.91388 6.06592 6.11512 6.28794 6.30658 6.41033 6.60621 6.93009 7.38382 7.67398 7.75775 7.88204 8.03973 8.40429 9.02700 9.59482 11.09222 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026990 B = 0.003775 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.175407 B = 7414.837396 C = 8054.302959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.115 3.885 3 H 0.093 0.907 4 N -0.684 5.684 5 C 0.067 3.933 6 C 0.025 3.975 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C -0.061 4.061 16 C -0.054 4.054 17 C -0.149 4.149 18 C 0.100 3.900 19 F -0.138 7.138 20 C -0.150 4.150 21 C -0.010 4.010 22 Cl -0.059 7.059 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.338 0.662 27 H 0.059 0.941 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.026 0.974 31 H 0.260 0.740 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.562 -0.107 -19.266 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.004 3.996 3 H 0.111 0.889 4 N -0.314 5.314 5 C -0.061 4.061 6 C -0.012 4.012 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.063 4.063 16 C -0.072 4.072 17 C -0.168 4.168 18 C 0.080 3.920 19 F -0.117 7.117 20 C -0.169 4.169 21 C -0.037 4.037 22 Cl -0.030 7.030 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.156 0.844 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.847 -0.007 -19.331 19.711 hybrid contribution -0.742 0.706 0.806 1.303 sum -4.589 0.699 -18.526 19.099 Atomic orbital electron populations 1.22447 0.95987 1.02366 1.02650 1.20482 0.92848 0.97871 0.88350 0.88853 1.60713 1.56125 1.10372 1.04205 1.22201 0.98468 0.95209 0.90234 1.19072 0.97037 0.95311 0.89819 1.21202 1.43918 0.96409 0.94478 0.92695 1.24995 0.95352 0.95094 0.98877 1.69980 1.44537 1.14347 1.24365 0.86541 0.77692 0.81149 0.82647 1.19758 1.21040 1.20966 1.19921 0.98585 0.94195 0.93589 1.20933 0.94963 0.93160 0.98154 1.21306 1.02502 1.01412 0.91577 1.17439 1.00561 0.90451 0.83535 1.91507 1.86790 1.81732 1.51628 1.20839 1.03506 0.93431 0.99154 1.20453 1.02807 0.86074 0.94415 1.98374 1.91875 1.14324 1.98405 0.91610 0.92129 0.92290 0.84429 0.92209 0.96262 0.96774 0.95609 0.93040 0.83194 0.84184 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 9.14 37.15 0.34 -1.78 16 2 C 0.12 1.58 2.31 -68.87 -0.16 1.42 16 3 H 0.09 1.37 6.78 -51.93 -0.35 1.01 16 4 N -0.68 -11.15 5.24 -107.96 -0.57 -11.71 16 5 C 0.07 1.33 5.42 -3.83 -0.02 1.31 16 6 C 0.03 0.63 5.23 -27.89 -0.15 0.48 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 11 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 C -0.06 -0.78 5.06 -104.58 -0.53 -1.31 16 16 C -0.05 -0.64 9.32 -39.60 -0.37 -1.01 16 17 C -0.15 -1.61 10.03 -39.51 -0.40 -2.01 16 18 C 0.10 1.13 7.30 -39.43 -0.29 0.84 16 19 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 20 C -0.15 -1.65 9.81 -39.48 -0.39 -2.04 16 21 C -0.01 -0.12 6.31 -39.50 -0.25 -0.37 16 22 Cl -0.06 -0.67 27.15 -51.86 -1.41 -2.07 16 23 H 0.06 0.84 7.45 -51.93 -0.39 0.45 16 24 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 25 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 26 H 0.34 5.16 7.90 -39.29 -0.31 4.85 16 27 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 28 H 0.02 0.38 7.44 -51.93 -0.39 -0.01 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.15 1.72 6.88 -52.49 -0.36 1.36 16 33 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -29.18 307.30 -8.48 -37.66 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.28 Total: 0.17 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.62 Total: -17.74 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.17 Total: -37.52 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.41 Total: -2.07 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.18 -8.48 -37.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096491910.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.716 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds