Wall clock time and date at job start Mon Mar 30 2020 01:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99563 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00432 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46616 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47104 * 119.99966 * 11 9 7 14 14 H 1.48489 * 109.47200 * 240.00246 * 11 9 7 15 15 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 16 16 C 1.38250 * 119.98568 * 264.73097 * 15 2 1 17 17 C 1.38181 * 120.03795 * 179.72543 * 16 15 2 18 18 C 1.38481 * 120.00342 * 0.54550 * 17 16 15 19 19 F 1.35105 * 120.02233 * 179.74883 * 18 17 16 20 20 C 1.38416 * 119.96197 * 359.72416 * 18 17 16 21 21 C 1.38335 * 119.96278 * 0.02562 * 20 18 17 22 22 Cl 1.73598 * 120.00459 * 180.02562 * 21 20 18 23 23 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 24 24 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 25 25 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 26 26 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 27 27 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 28 28 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 29 29 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 30 30 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 31 31 H 0.97002 * 119.99731 * 180.02562 * 10 9 7 32 32 H 1.08000 * 119.97433 * 359.97438 * 16 15 2 33 33 H 1.08004 * 119.99698 * 180.24748 * 17 16 15 34 34 H 1.08001 * 120.02224 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6600 0.4058 4.7515 8 1 2.3648 1.4382 4.6356 9 6 3.0954 -0.0534 5.9765 10 7 3.4544 -1.3107 6.1176 11 14 3.1767 1.1106 7.4352 12 1 2.7223 2.4610 7.0168 13 1 2.2966 0.6068 8.5201 14 1 4.5750 1.1891 7.9285 15 6 2.0323 -0.7105 -1.2304 16 6 2.3663 -2.0505 -1.1665 17 6 2.8216 -2.7044 -2.2954 18 6 2.9544 -2.0148 -3.4889 19 9 3.4044 -2.6526 -4.5917 20 6 2.6253 -0.6718 -3.5516 21 6 2.1647 -0.0198 -2.4218 22 17 1.7510 1.6643 -2.4994 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.4494 -1.4979 1.4101 27 1 2.7588 1.0462 2.1182 28 1 1.0870 0.6163 2.5526 29 1 1.9183 -1.3565 3.8030 30 1 3.5903 -0.9272 3.3692 31 1 3.7603 -1.6339 6.9796 32 1 2.2674 -2.5874 -0.2346 33 1 3.0786 -3.7523 -2.2457 34 1 2.7281 -0.1331 -4.4820 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096491910.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:28 Heat of formation + Delta-G solvation = -57.171820 kcal Electronic energy + Delta-G solvation = -17847.718731 eV Core-core repulsion = 14719.495608 eV Total energy + Delta-G solvation = -3128.223122 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.96229 -40.62871 -37.91344 -37.45912 -35.34388 -33.22182 -31.98608 -30.53717 -29.25573 -26.15262 -24.62332 -23.99329 -22.40067 -21.70372 -18.88470 -18.51292 -17.66434 -17.17576 -16.67715 -16.41253 -16.16367 -15.76052 -15.53629 -15.00479 -14.79689 -14.43510 -14.23969 -14.10378 -13.76612 -13.68607 -13.03505 -12.86043 -12.73271 -12.51291 -12.37171 -12.30846 -12.11448 -11.96180 -11.76318 -11.36166 -11.20682 -10.54840 -9.99588 -9.61291 -9.28233 -8.18727 -6.29172 -0.04693 0.08143 0.99857 1.41433 1.42239 1.54923 2.39935 2.42467 3.15389 3.16770 3.23685 3.68138 3.78056 3.94948 4.15738 4.22598 4.28199 4.52039 4.56173 4.64177 4.68736 4.87201 4.92028 4.97533 5.09546 5.16256 5.22155 5.30137 5.49495 5.70987 5.72519 5.81608 6.14747 6.27881 6.54239 6.88506 7.40053 8.93417 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026990 B = 0.003775 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.175407 B = 7414.837396 C = 8054.302959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.119 3.881 3 H 0.084 0.916 4 N -0.686 5.686 5 C 0.086 3.914 6 C 0.032 3.968 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.003 3.997 10 N -0.930 5.930 11 Si 0.963 3.037 12 H -0.263 1.263 13 H -0.278 1.278 14 H -0.279 1.279 15 C -0.073 4.073 16 C -0.062 4.062 17 C -0.144 4.144 18 C 0.095 3.905 19 F -0.139 7.139 20 C -0.146 4.146 21 C -0.016 4.016 22 Cl -0.055 7.055 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.344 0.656 27 H 0.054 0.946 28 H 0.025 0.975 29 H -0.005 1.005 30 H -0.005 1.005 31 H 0.263 0.737 32 H 0.151 0.849 33 H 0.160 0.840 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.984 0.539 -19.922 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 H 0.103 0.897 4 N -0.317 5.317 5 C -0.042 4.042 6 C -0.005 4.005 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.196 4.196 10 N -0.571 5.571 11 Si 0.788 3.212 12 H -0.187 1.187 13 H -0.204 1.204 14 H -0.205 1.205 15 C -0.074 4.074 16 C -0.080 4.080 17 C -0.163 4.163 18 C 0.075 3.925 19 F -0.117 7.117 20 C -0.166 4.166 21 C -0.044 4.044 22 Cl -0.026 7.026 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.163 0.837 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.072 0.928 32 H 0.168 0.832 33 H 0.178 0.822 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.279 0.643 -20.010 20.472 hybrid contribution -0.597 0.462 0.933 1.200 sum -4.876 1.105 -19.076 19.721 Atomic orbital electron populations 1.22380 0.94576 1.03054 1.02835 1.20440 0.93976 0.97208 0.87484 0.89748 1.60572 1.57182 1.10117 1.03795 1.21775 0.98183 0.94739 0.89527 1.18915 0.95053 0.94852 0.91725 1.21647 1.43804 0.97019 0.95633 0.92268 1.25916 0.94851 0.96747 1.02037 1.70105 1.45387 1.16281 1.25294 0.85429 0.77813 0.79214 0.78770 1.18651 1.20361 1.20522 1.19853 0.99588 0.94626 0.93353 1.20983 0.95392 0.92999 0.98627 1.21491 1.01473 1.02348 0.90971 1.17543 1.00615 0.90655 0.83642 1.91508 1.86807 1.81752 1.51662 1.21014 1.02574 0.93449 0.99533 1.20480 1.03136 0.86312 0.94435 1.98374 1.91859 1.14012 1.98389 0.92340 0.90946 0.91384 0.83732 0.92730 0.95710 0.98631 0.98656 0.92808 0.83180 0.82230 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 9.14 71.98 0.66 -3.20 16 2 C 0.12 3.16 2.31 44.16 0.10 3.26 16 3 H 0.08 2.40 6.78 -2.39 -0.02 2.39 16 4 N -0.69 -22.18 5.24 -495.47 -2.60 -24.78 16 5 C 0.09 3.46 5.42 86.30 0.47 3.93 16 6 C 0.03 1.65 5.23 29.85 0.16 1.81 16 7 C -0.54 -30.46 9.11 25.60 0.23 -30.22 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.00 0.14 5.46 84.65 0.46 0.60 16 10 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 11 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 12 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 15 C -0.07 -1.76 5.06 -19.84 -0.10 -1.86 16 16 C -0.06 -1.39 9.32 22.26 0.21 -1.18 16 17 C -0.14 -2.87 10.03 22.31 0.22 -2.65 16 18 C 0.09 1.97 7.30 22.37 0.16 2.13 16 19 F -0.14 -2.93 17.27 44.97 0.78 -2.15 16 20 C -0.15 -2.95 9.81 22.34 0.22 -2.73 16 21 C -0.02 -0.37 6.31 22.32 0.14 -0.23 16 22 Cl -0.06 -1.18 27.15 -2.72 -0.07 -1.25 16 23 H 0.06 1.41 7.45 -2.39 -0.02 1.40 16 24 H 0.07 1.48 7.90 -2.39 -0.02 1.46 16 25 H 0.07 1.42 8.13 -2.39 -0.02 1.40 16 26 H 0.34 10.42 7.90 -89.69 -0.71 9.72 16 27 H 0.05 2.23 8.06 -2.39 -0.02 2.21 16 28 H 0.02 0.96 7.44 -2.39 -0.02 0.94 16 29 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.15 3.33 6.88 -2.91 -0.02 3.31 16 33 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -61.70 307.30 3.75 -57.95 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.40 Total: 10.45 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 2.93 Total: -30.34 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.31 Total: -80.54 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.07 Total: -1.25 kcal Total: -61.70 3.75 -57.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096491910.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.776 kcal (2) G-P(sol) polarization free energy of solvation -61.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds