Wall clock time and date at job start Mon Mar 30 2020 01:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47475 * 2 1 4 4 N 1.46907 * 109.46593 * 240.00411 * 2 1 3 5 5 C 1.46900 * 110.99838 * 85.00577 * 4 2 1 6 6 C 1.53004 * 109.46857 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46800 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00246 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00003 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99740 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00285 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47227 * 90.00526 * 11 9 7 13 13 H 1.48503 * 109.47468 * 210.00433 * 11 9 7 14 14 H 1.48500 * 109.47445 * 330.00533 * 11 9 7 15 15 C 1.50701 * 109.47307 * 120.00797 * 2 1 3 16 16 C 1.38458 * 120.01999 * 75.24334 * 15 2 1 17 17 F 1.35108 * 120.02112 * 0.02562 * 16 15 2 18 18 C 1.38444 * 119.96251 * 180.27915 * 16 15 2 19 19 C 1.38234 * 119.99701 * 359.44982 * 18 16 15 20 20 C 1.38194 * 120.03913 * 0.30276 * 19 18 16 21 21 C 1.38288 * 120.01702 * 254.99725 * 15 2 1 22 22 Cl 1.73596 * 120.00150 * 0.02562 * 21 15 2 23 23 H 1.08998 * 109.46682 * 299.99611 * 1 2 3 24 24 H 1.08998 * 109.47357 * 59.99537 * 1 2 3 25 25 H 1.08998 * 109.47671 * 179.97438 * 1 2 3 26 26 H 1.00903 * 110.99479 * 208.95753 * 4 2 1 27 27 H 1.09002 * 109.46837 * 299.99016 * 5 4 2 28 28 H 1.08995 * 109.47615 * 59.99505 * 5 4 2 29 29 H 1.09000 * 109.47285 * 299.99618 * 6 5 4 30 30 H 1.08995 * 109.47344 * 59.99422 * 6 5 4 31 31 H 0.97000 * 119.99501 * 179.97438 * 10 9 7 32 32 H 1.08002 * 120.00494 * 179.73190 * 18 16 15 33 33 H 1.08001 * 119.97639 * 180.27364 * 19 18 16 34 34 H 1.08002 * 119.98417 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1996 5 6 2.0824 0.2228 -2.3469 6 6 2.5961 -0.5327 -3.5743 7 6 2.6600 0.4061 -4.7514 8 1 2.3635 1.4381 -4.6358 9 6 3.0970 -0.0526 -5.9761 10 7 3.4576 -1.3095 -6.1170 11 14 3.1755 1.1107 -7.4354 12 1 4.5109 1.7589 -7.4805 13 1 2.9533 0.3473 -8.6896 14 1 2.1249 2.1509 -7.2964 15 6 2.0324 -0.7106 1.2304 16 6 1.9754 -2.0920 1.3043 17 9 1.4699 -2.8038 0.2732 18 6 2.4320 -2.7432 2.4375 19 6 2.9548 -2.0149 3.4897 20 6 3.0164 -0.6365 3.4138 21 6 2.5553 0.0165 2.2841 22 17 2.6324 1.7482 2.1902 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 2.9172 -1.1206 -1.0289 27 1 1.0870 0.6165 -2.5525 28 1 2.7588 1.0463 -2.1182 29 1 3.5915 -0.9261 -3.3685 30 1 1.9200 -1.3564 -3.8032 31 1 3.7647 -1.6323 -6.9786 32 1 2.3838 -3.8205 2.4976 33 1 3.3149 -2.5236 4.3717 34 1 3.4246 -0.0683 4.2366 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096492356.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:31 Heat of formation + Delta-G solvation = -54.663719 kcal Electronic energy + Delta-G solvation = -18283.931835 eV Core-core repulsion = 15155.817472 eV Total energy + Delta-G solvation = -3128.114363 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.79069 -40.48263 -37.94213 -37.50617 -35.41069 -33.41745 -31.44410 -30.73560 -29.59937 -26.32507 -24.50560 -23.88134 -22.38779 -21.62865 -18.71287 -18.49520 -17.75050 -17.32708 -16.65959 -16.47621 -16.18667 -15.73288 -15.45911 -15.20283 -14.66185 -14.35334 -14.30573 -14.03254 -13.64786 -13.23579 -13.04816 -12.92304 -12.77845 -12.66928 -12.42472 -12.35423 -12.28311 -12.06516 -11.54090 -11.41182 -11.25383 -10.57505 -9.87564 -9.69439 -9.34655 -8.21004 -6.32955 -0.04239 0.04947 0.99402 1.39476 1.41477 1.52716 2.39113 2.42453 3.12266 3.17074 3.31174 3.44227 3.89125 3.92175 4.22761 4.28385 4.30789 4.48508 4.50360 4.59014 4.76489 4.82754 4.96877 5.02024 5.04379 5.12146 5.21871 5.27578 5.43133 5.64082 5.73934 5.77249 6.09730 6.22769 6.42009 6.83728 7.36318 8.91363 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025371 B = 0.004342 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.378579 B = 6446.682271 C = 7011.500096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.117 3.883 3 H 0.060 0.940 4 N -0.682 5.682 5 C 0.086 3.914 6 C 0.035 3.965 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.969 3.031 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.263 1.263 15 C -0.135 4.135 16 C 0.108 3.892 17 F -0.133 7.133 18 C -0.152 4.152 19 C -0.066 4.066 20 C -0.119 4.119 21 C -0.017 4.017 22 Cl -0.060 7.060 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.333 0.667 27 H 0.061 0.939 28 H 0.018 0.982 29 H -0.012 1.012 30 H -0.006 1.006 31 H 0.264 0.736 32 H 0.161 0.839 33 H 0.183 0.817 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 0.871 23.802 23.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.008 3.992 3 H 0.078 0.922 4 N -0.313 5.313 5 C -0.042 4.042 6 C -0.003 4.003 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.197 4.197 10 N -0.572 5.572 11 Si 0.793 3.207 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.187 1.187 15 C -0.137 4.137 16 C 0.088 3.912 17 F -0.111 7.111 18 C -0.171 4.171 19 C -0.084 4.084 20 C -0.137 4.137 21 C -0.044 4.044 22 Cl -0.031 7.031 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.151 0.849 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.007 0.993 30 H 0.012 0.988 31 H 0.073 0.927 32 H 0.179 0.821 33 H 0.200 0.800 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.254 0.645 23.451 23.568 hybrid contribution 0.748 0.836 -1.238 1.671 sum -1.506 1.481 22.214 22.314 Atomic orbital electron populations 1.21712 0.92988 1.02127 1.01853 1.20545 0.96895 0.95774 0.85988 0.92203 1.60677 1.33047 1.33535 1.04033 1.21827 0.99242 0.93069 0.90077 1.18884 0.94192 0.95064 0.92125 1.21591 1.44134 0.96946 0.95654 0.92126 1.25989 0.94676 0.96861 1.02155 1.70122 1.45122 1.16453 1.25485 0.85400 0.78904 0.78597 0.77844 1.19655 1.20623 1.18697 1.19866 1.03724 0.92904 0.97245 1.17701 0.98689 0.88441 0.86383 1.91575 1.84580 1.77620 1.57372 1.21646 1.00525 1.02710 0.92203 1.21421 0.95627 0.92510 0.98804 1.21456 1.00030 0.95475 0.96764 1.20758 1.02405 0.85079 0.96151 1.98378 1.96951 1.09696 1.98078 0.90885 0.92688 0.92775 0.84935 0.92101 0.96398 0.99321 0.98796 0.92719 0.82088 0.79996 0.81642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.35 71.98 0.67 -3.13 16 2 C 0.12 3.70 2.49 44.17 0.11 3.81 16 3 H 0.06 1.91 6.03 -2.39 -0.01 1.90 16 4 N -0.68 -26.54 5.02 -495.43 -2.48 -29.03 16 5 C 0.09 3.88 5.42 86.30 0.47 4.35 16 6 C 0.03 1.95 5.23 29.85 0.16 2.10 16 7 C -0.54 -32.11 9.11 25.60 0.23 -31.88 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.00 0.07 5.46 84.66 0.46 0.53 16 10 N -0.93 -58.31 13.29 21.45 0.28 -58.02 16 11 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 15 C -0.14 -3.63 4.67 -19.80 -0.09 -3.73 16 16 C 0.11 2.82 6.79 22.37 0.15 2.97 16 17 F -0.13 -4.33 15.28 44.97 0.69 -3.64 16 18 C -0.15 -2.71 10.03 22.32 0.22 -2.49 16 19 C -0.07 -0.83 10.04 22.26 0.22 -0.60 16 20 C -0.12 -1.80 9.83 22.30 0.22 -1.59 16 21 C -0.02 -0.37 6.31 22.32 0.14 -0.23 16 22 Cl -0.06 -1.33 27.08 -2.72 -0.07 -1.41 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.05 1.70 7.45 -2.39 -0.02 1.68 16 25 H 0.05 1.67 7.68 -2.39 -0.02 1.65 16 26 H 0.33 13.13 8.05 -89.69 -0.72 12.41 16 27 H 0.06 2.70 7.44 -2.39 -0.02 2.69 16 28 H 0.02 0.79 8.05 -2.39 -0.02 0.77 16 29 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 34 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -68.80 305.61 3.80 -65.00 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.39 Total: 9.73 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 2.97 Total: -29.87 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -2.20 Total: -87.05 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.69 Total: -3.64 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.07 Total: -1.41 kcal Total: -68.80 3.80 -65.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096492356.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.336 kcal (2) G-P(sol) polarization free energy of solvation -68.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds