Wall clock time and date at job start Mon Mar 30 2020 01:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46651 * 2 1 4 4 N 1.46904 * 109.46955 * 119.99117 * 2 1 3 5 5 C 1.46893 * 111.00288 * 272.10573 * 4 2 1 6 6 C 1.53005 * 109.46885 * 180.02562 * 5 4 2 7 7 C 1.50707 * 109.46655 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00104 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99558 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00051 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99794 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46761 * 90.00446 * 11 9 7 13 13 H 1.48507 * 109.47051 * 210.00132 * 11 9 7 14 14 H 1.48495 * 109.47047 * 330.00223 * 11 9 7 15 15 C 1.50693 * 109.47406 * 239.99527 * 2 1 3 16 16 C 1.38462 * 120.02011 * 285.68011 * 15 2 1 17 17 F 1.35101 * 120.01872 * 359.97438 * 16 15 2 18 18 C 1.38442 * 119.96186 * 180.02562 * 16 15 2 19 19 C 1.38226 * 120.00244 * 0.02562 * 18 16 15 20 20 C 1.38199 * 120.03873 * 359.97438 * 19 18 16 21 21 C 1.38297 * 120.02135 * 105.40394 * 15 2 1 22 22 Cl 1.73594 * 119.99645 * 359.97438 * 21 15 2 23 23 H 1.09003 * 109.47163 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47108 * 300.00300 * 1 2 3 25 25 H 1.09004 * 109.47283 * 60.00759 * 1 2 3 26 26 H 1.00900 * 110.99777 * 36.06293 * 4 2 1 27 27 H 1.09001 * 109.46950 * 300.00007 * 5 4 2 28 28 H 1.08997 * 109.47334 * 59.99991 * 5 4 2 29 29 H 1.09001 * 109.47119 * 299.99643 * 6 5 4 30 30 H 1.08997 * 109.47354 * 59.99744 * 6 5 4 31 31 H 0.96998 * 119.99704 * 180.02562 * 10 9 7 32 32 H 1.08007 * 120.00211 * 180.02562 * 18 16 15 33 33 H 1.08002 * 119.98135 * 179.97438 * 19 18 16 34 34 H 1.07996 * 119.97916 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6923 1.1996 5 6 2.1476 0.2381 2.3291 6 6 2.6594 -0.5178 3.5570 7 6 2.7913 0.4369 4.7156 8 1 2.5361 1.4786 4.5886 9 6 3.2379 -0.0196 5.9375 10 7 3.5492 -1.2881 6.0919 11 14 3.4020 1.1638 7.3735 12 1 2.1263 1.2007 8.1327 13 1 4.4971 0.7087 8.2673 14 1 3.7131 2.5227 6.8618 15 6 2.0324 -0.7105 -1.2303 16 6 1.9579 -2.0907 -1.3122 17 9 1.4352 -2.8012 -0.2889 18 6 2.4202 -2.7422 -2.4429 19 6 2.9564 -2.0149 -3.4890 20 6 3.0309 -0.6374 -3.4073 21 6 2.5629 0.0160 -2.2807 22 17 2.6497 1.7470 -2.1823 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 1.4222 -1.4699 1.4375 27 1 2.8516 1.0290 2.0703 28 1 1.1745 0.6760 2.5511 29 1 1.9558 -1.3090 3.8159 30 1 3.6326 -0.9555 3.3347 31 1 3.8630 -1.6093 6.9517 32 1 2.3620 -3.8187 -2.5076 33 1 3.3174 -2.5236 -4.3707 34 1 3.4496 -0.0701 -4.2253 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096492358.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:33 Heat of formation + Delta-G solvation = -38.516363 kcal Electronic energy + Delta-G solvation = -18283.011116 eV Core-core repulsion = 15155.596955 eV Total energy + Delta-G solvation = -3127.414161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.84695 -39.46973 -36.66477 -36.55652 -33.45037 -31.76973 -30.53687 -29.51580 -27.77262 -24.43462 -23.39966 -22.89658 -20.81560 -20.51795 -17.72709 -16.79597 -16.30983 -15.94631 -15.58191 -14.89422 -14.78246 -14.38840 -14.20169 -14.08353 -13.64898 -13.21219 -12.73051 -12.53119 -12.29672 -12.13053 -11.92789 -11.48361 -11.46510 -11.34980 -11.06576 -10.92989 -10.54614 -10.45188 -10.01543 -9.40633 -9.14012 -8.88220 -8.75069 -8.32827 -7.82752 -5.96881 -3.99443 0.88073 0.99388 1.94755 3.31099 3.33872 3.39961 3.43533 4.19921 4.39354 4.49953 4.62428 4.72559 4.99261 5.05282 5.25801 5.29581 5.39043 5.47128 5.66425 5.78337 5.82527 5.98672 6.03769 6.04270 6.21151 6.37131 6.44424 6.63706 7.00042 7.47200 7.75522 7.84461 7.97867 8.11342 8.46154 9.07761 9.64125 11.14579 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024975 B = 0.004359 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.834184 B = 6421.283255 C = 6979.488719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.112 3.888 3 H 0.097 0.903 4 N -0.685 5.685 5 C 0.068 3.932 6 C 0.026 3.974 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.086 4.086 16 C 0.134 3.866 17 F -0.123 7.123 18 C -0.154 4.154 19 C -0.088 4.088 20 C -0.124 4.124 21 C -0.008 4.008 22 Cl -0.057 7.057 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.343 0.657 27 H 0.058 0.942 28 H 0.017 0.983 29 H 0.014 0.986 30 H 0.025 0.975 31 H 0.260 0.740 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 -0.067 -21.408 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.001 3.999 3 H 0.115 0.885 4 N -0.316 5.316 5 C -0.060 4.060 6 C -0.012 4.012 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.088 4.088 16 C 0.114 3.886 17 F -0.101 7.101 18 C -0.172 4.172 19 C -0.106 4.106 20 C -0.143 4.143 21 C -0.036 4.036 22 Cl -0.028 7.028 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.163 0.837 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.248 -0.008 -21.375 21.621 hybrid contribution -0.838 0.704 1.282 1.686 sum -4.086 0.696 -20.093 20.516 Atomic orbital electron populations 1.22454 0.96052 1.02472 1.02520 1.20548 0.92945 0.98122 0.88277 0.88528 1.60684 1.54746 1.11821 1.04390 1.22197 0.98308 0.94879 0.90638 1.19063 0.96984 0.95334 0.89787 1.21171 1.44230 0.95255 0.95305 0.92756 1.24998 0.95449 0.95100 0.98779 1.69979 1.45024 1.13853 1.24370 0.86593 0.77687 0.81287 0.82419 1.20719 1.21200 1.19883 1.19867 1.00352 0.92242 0.96366 1.17252 0.97530 0.88403 0.85434 1.91502 1.83649 1.77682 1.57278 1.21251 1.01487 1.01305 0.93203 1.20869 0.98338 0.92989 0.98451 1.21027 1.01307 0.94731 0.97256 1.20526 1.02178 0.85152 0.95703 1.98373 1.96929 1.09533 1.98005 0.92217 0.91492 0.92268 0.83729 0.92305 0.96430 0.96782 0.95650 0.93015 0.84283 0.84337 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 9.09 37.16 0.34 -2.05 16 2 C 0.11 1.73 2.48 -68.86 -0.17 1.56 16 3 H 0.10 1.53 5.97 -51.93 -0.31 1.22 16 4 N -0.68 -12.89 5.63 -107.96 -0.61 -13.50 16 5 C 0.07 1.47 5.42 -3.83 -0.02 1.44 16 6 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 11 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.09 -1.21 4.95 -104.52 -0.52 -1.73 16 16 C 0.13 1.83 6.97 -39.42 -0.27 1.55 16 17 F -0.12 -1.86 14.36 2.25 0.03 -1.83 16 18 C -0.15 -1.63 10.03 -39.51 -0.40 -2.03 16 19 C -0.09 -0.78 10.04 -39.60 -0.40 -1.18 16 20 C -0.12 -1.23 9.83 -39.54 -0.39 -1.62 16 21 C -0.01 -0.10 6.31 -39.51 -0.25 -0.35 16 22 Cl -0.06 -0.69 27.07 -51.86 -1.40 -2.09 16 23 H 0.06 0.80 7.54 -51.93 -0.39 0.40 16 24 H 0.07 0.93 7.65 -51.93 -0.40 0.54 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.34 6.43 6.85 -39.29 -0.27 6.16 16 27 H 0.06 1.28 8.05 -51.93 -0.42 0.87 16 28 H 0.02 0.37 7.65 -51.93 -0.40 -0.03 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -30.98 304.50 -8.57 -39.55 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.26 Total: 0.55 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -2.64 Total: -17.60 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.13 Total: -40.10 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.03 Total: -1.83 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.40 Total: -2.09 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.98 -8.57 -39.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096492358.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.033 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds