Wall clock time and date at job start Mon Mar 30 2020 01:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46651 * 2 1 4 4 N 1.46904 * 109.46955 * 119.99117 * 2 1 3 5 5 C 1.46893 * 111.00288 * 272.10573 * 4 2 1 6 6 C 1.53005 * 109.46885 * 180.02562 * 5 4 2 7 7 C 1.50707 * 109.46655 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00104 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99558 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00051 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99794 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46761 * 90.00446 * 11 9 7 13 13 H 1.48507 * 109.47051 * 210.00132 * 11 9 7 14 14 H 1.48495 * 109.47047 * 330.00223 * 11 9 7 15 15 C 1.50693 * 109.47406 * 239.99527 * 2 1 3 16 16 C 1.38462 * 120.02011 * 285.68011 * 15 2 1 17 17 F 1.35101 * 120.01872 * 359.97438 * 16 15 2 18 18 C 1.38442 * 119.96186 * 180.02562 * 16 15 2 19 19 C 1.38226 * 120.00244 * 0.02562 * 18 16 15 20 20 C 1.38199 * 120.03873 * 359.97438 * 19 18 16 21 21 C 1.38297 * 120.02135 * 105.40394 * 15 2 1 22 22 Cl 1.73594 * 119.99645 * 359.97438 * 21 15 2 23 23 H 1.09003 * 109.47163 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47108 * 300.00300 * 1 2 3 25 25 H 1.09004 * 109.47283 * 60.00759 * 1 2 3 26 26 H 1.00900 * 110.99777 * 36.06293 * 4 2 1 27 27 H 1.09001 * 109.46950 * 300.00007 * 5 4 2 28 28 H 1.08997 * 109.47334 * 59.99991 * 5 4 2 29 29 H 1.09001 * 109.47119 * 299.99643 * 6 5 4 30 30 H 1.08997 * 109.47354 * 59.99744 * 6 5 4 31 31 H 0.96998 * 119.99704 * 180.02562 * 10 9 7 32 32 H 1.08007 * 120.00211 * 180.02562 * 18 16 15 33 33 H 1.08002 * 119.98135 * 179.97438 * 19 18 16 34 34 H 1.07996 * 119.97916 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6923 1.1996 5 6 2.1476 0.2381 2.3291 6 6 2.6594 -0.5178 3.5570 7 6 2.7913 0.4369 4.7156 8 1 2.5361 1.4786 4.5886 9 6 3.2379 -0.0196 5.9375 10 7 3.5492 -1.2881 6.0919 11 14 3.4020 1.1638 7.3735 12 1 2.1263 1.2007 8.1327 13 1 4.4971 0.7087 8.2673 14 1 3.7131 2.5227 6.8618 15 6 2.0324 -0.7105 -1.2303 16 6 1.9579 -2.0907 -1.3122 17 9 1.4352 -2.8012 -0.2889 18 6 2.4202 -2.7422 -2.4429 19 6 2.9564 -2.0149 -3.4890 20 6 3.0309 -0.6374 -3.4073 21 6 2.5629 0.0160 -2.2807 22 17 2.6497 1.7470 -2.1823 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 1.4222 -1.4699 1.4375 27 1 2.8516 1.0290 2.0703 28 1 1.1745 0.6760 2.5511 29 1 1.9558 -1.3090 3.8159 30 1 3.6326 -0.9555 3.3347 31 1 3.8630 -1.6093 6.9517 32 1 2.3620 -3.8187 -2.5076 33 1 3.3174 -2.5236 -4.3707 34 1 3.4496 -0.0701 -4.2253 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096492358.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:33 Heat of formation + Delta-G solvation = -56.755129 kcal Electronic energy + Delta-G solvation = -18283.802008 eV Core-core repulsion = 15155.596955 eV Total energy + Delta-G solvation = -3128.205053 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.89898 -40.40339 -38.03934 -37.45911 -35.42320 -33.40747 -31.41607 -30.83472 -29.35584 -26.20466 -24.62746 -23.86081 -22.46507 -21.87827 -18.70026 -18.51324 -17.71196 -17.08296 -16.62739 -16.47513 -16.20217 -15.75449 -15.54495 -15.27216 -14.66371 -14.44158 -14.23760 -14.07750 -13.73195 -13.32616 -13.08835 -12.86749 -12.84801 -12.67177 -12.38348 -12.33240 -12.29512 -12.02156 -11.59415 -11.41037 -11.25005 -10.57873 -9.82020 -9.66075 -9.34060 -8.20978 -6.32996 0.01746 0.11189 1.04470 1.39553 1.41584 1.52796 2.39379 2.45893 3.12340 3.21199 3.33441 3.60337 3.85022 3.93132 4.17503 4.24156 4.30207 4.44445 4.50357 4.57119 4.68793 4.78336 4.95191 5.02065 5.04964 5.14223 5.17874 5.25162 5.42708 5.64291 5.75810 5.78347 6.09882 6.22806 6.45886 6.83732 7.36356 8.91413 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024975 B = 0.004359 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.834184 B = 6421.283255 C = 6979.488719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 H 0.091 0.909 4 N -0.692 5.692 5 C 0.087 3.913 6 C 0.034 3.966 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.969 3.031 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.263 1.263 15 C -0.109 4.109 16 C 0.104 3.896 17 F -0.141 7.141 18 C -0.151 4.151 19 C -0.073 4.073 20 C -0.118 4.118 21 C -0.021 4.021 22 Cl -0.061 7.061 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.341 0.659 27 H 0.056 0.944 28 H 0.023 0.977 29 H -0.010 1.010 30 H -0.008 1.008 31 H 0.264 0.736 32 H 0.160 0.840 33 H 0.181 0.819 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 0.630 -23.082 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.002 3.998 3 H 0.109 0.891 4 N -0.323 5.323 5 C -0.042 4.042 6 C -0.004 4.004 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.197 4.197 10 N -0.572 5.572 11 Si 0.793 3.207 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.187 1.187 15 C -0.112 4.112 16 C 0.084 3.916 17 F -0.119 7.119 18 C -0.170 4.170 19 C -0.091 4.091 20 C -0.136 4.136 21 C -0.048 4.048 22 Cl -0.032 7.032 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.160 0.840 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.008 0.992 30 H 0.010 0.990 31 H 0.073 0.927 32 H 0.178 0.822 33 H 0.199 0.801 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.072 0.698 -23.076 23.290 hybrid contribution -0.866 0.427 1.679 1.937 sum -3.938 1.125 -21.397 21.785 Atomic orbital electron populations 1.22369 0.94768 1.02585 1.03037 1.20555 0.94106 0.97658 0.87452 0.89081 1.60591 1.55719 1.11524 1.04500 1.21797 0.98121 0.94436 0.89803 1.18897 0.94705 0.94856 0.91910 1.21593 1.44496 0.95881 0.96320 0.92058 1.25992 0.94729 0.96970 1.02005 1.70121 1.45697 1.16015 1.25377 0.85399 0.78026 0.78996 0.78316 1.19629 1.20653 1.18694 1.19768 1.02340 0.92702 0.96358 1.17634 0.99184 0.88508 0.86297 1.91451 1.84198 1.77986 1.58307 1.21599 1.00407 1.02588 0.92381 1.21377 0.96206 0.92563 0.98906 1.21442 0.99866 0.95460 0.96854 1.20713 1.02738 0.85081 0.96280 1.98368 1.96970 1.09811 1.98043 0.92301 0.92207 0.90381 0.83962 0.92500 0.95849 0.99193 0.98991 0.92722 0.82194 0.80143 0.81738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.58 9.09 71.98 0.65 -3.93 16 2 C 0.11 3.51 2.48 44.17 0.11 3.62 16 3 H 0.09 2.91 5.97 -2.39 -0.01 2.90 16 4 N -0.69 -26.92 5.63 -495.46 -2.79 -29.71 16 5 C 0.09 3.88 5.42 86.31 0.47 4.35 16 6 C 0.03 1.89 5.23 29.85 0.16 2.04 16 7 C -0.54 -32.02 9.11 25.60 0.23 -31.78 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.00 0.06 5.46 84.65 0.46 0.52 16 10 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 11 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 15 C -0.11 -3.04 4.95 -19.80 -0.10 -3.14 16 16 C 0.10 2.78 6.97 22.37 0.16 2.93 16 17 F -0.14 -4.38 14.36 44.97 0.65 -3.73 16 18 C -0.15 -2.86 10.03 22.32 0.22 -2.64 16 19 C -0.07 -1.01 10.04 22.26 0.22 -0.79 16 20 C -0.12 -1.95 9.83 22.30 0.22 -1.73 16 21 C -0.02 -0.48 6.31 22.32 0.14 -0.34 16 22 Cl -0.06 -1.40 27.07 -2.72 -0.07 -1.47 16 23 H 0.06 1.59 7.54 -2.39 -0.02 1.57 16 24 H 0.06 1.67 7.65 -2.39 -0.02 1.66 16 25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.34 13.41 6.85 -89.69 -0.61 12.80 16 27 H 0.06 2.54 8.05 -2.39 -0.02 2.52 16 28 H 0.02 1.01 7.65 -2.39 -0.02 0.99 16 29 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -68.53 304.50 3.54 -64.99 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.50 Total: 11.65 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 2.95 Total: -30.87 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -2.51 Total: -87.72 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.65 Total: -3.73 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.07 Total: -1.47 kcal Total: -68.53 3.54 -64.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096492358.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.239 kcal (2) G-P(sol) polarization free energy of solvation -68.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds