Wall clock time and date at job start Mon Mar 30 2020 01:32:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42901 * 113.99956 * 2 1
4 4 C 1.53001 * 109.46874 * 180.02562 * 3 2 1
5 5 N 1.46904 * 109.47269 * 65.24284 * 4 3 2
6 6 C 1.46904 * 110.99838 * 160.81462 * 5 4 3
7 7 C 1.50695 * 109.46902 * 199.61928 * 6 5 4
8 8 H 1.08007 * 120.00186 * 5.01061 * 7 6 5
9 9 C 1.37875 * 120.00074 * 185.01542 * 7 6 5
10 10 N 1.31516 * 120.00049 * 359.97438 * 9 7 6
11 11 Si 1.86802 * 120.00087 * 180.02562 * 9 7 6
12 12 H 1.48491 * 109.47460 * 89.99557 * 11 9 7
13 13 H 1.48508 * 109.46901 * 209.99692 * 11 9 7
14 14 H 1.48503 * 109.47139 * 329.99260 * 11 9 7
15 15 C 1.38599 * 110.99624 * 284.76571 * 5 4 3
16 16 N 1.32956 * 120.54097 * 301.55257 * 15 5 4
17 17 C 1.31763 * 120.70295 * 180.02562 * 16 15 5
18 18 N 1.31776 * 121.85938 * 359.97438 * 17 16 15
19 19 C 1.32564 * 121.01505 * 0.02562 * 18 17 16
20 20 C 1.38202 * 119.18450 * 0.02562 * 19 18 17
21 21 Cl 1.73596 * 120.84605 * 179.97438 * 20 19 18
22 22 H 1.09003 * 109.46876 * 180.02562 * 1 2 3
23 23 H 1.08997 * 109.46965 * 299.99966 * 1 2 3
24 24 H 1.08998 * 109.47536 * 60.00075 * 1 2 3
25 25 H 1.08994 * 109.47548 * 59.99980 * 3 2 1
26 26 H 1.08998 * 109.46652 * 299.99576 * 3 2 1
27 27 H 1.09000 * 109.47133 * 305.24121 * 4 3 2
28 28 H 1.08997 * 109.47021 * 185.24188 * 4 3 2
29 29 H 1.09000 * 109.46769 * 319.61933 * 6 5 4
30 30 H 1.08997 * 109.47267 * 79.61677 * 6 5 4
31 31 H 0.96995 * 120.00134 * 180.02562 * 10 9 7
32 32 H 1.08003 * 119.07628 * 180.02562 * 17 16 15
33 33 H 1.08000 * 120.40374 * 179.72803 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1846 -0.0006
5 7 3.9773 0.5680 -1.2587
6 6 5.3997 0.8387 -1.5065
7 6 5.7030 0.6327 -2.9682
8 1 4.9035 0.4101 -3.6594
9 6 7.0010 0.7282 -3.4231
10 7 7.9745 0.9997 -2.5815
11 14 7.3768 0.4735 -5.2351
12 1 7.2949 1.7749 -5.9454
13 1 8.7445 -0.0860 -5.3830
14 1 6.3900 -0.4712 -5.8173
15 6 3.7235 -0.7946 -1.2598
16 7 4.2442 -1.5796 -0.3216
17 6 4.0054 -2.8754 -0.3199
18 7 3.2487 -3.4445 -1.2365
19 6 2.6939 -2.7289 -2.2047
20 6 2.9171 -1.3657 -2.2478
21 17 2.2125 -0.3874 -3.4968
22 1 -0.3633 -1.0277 0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 1.6886 1.8464 0.8899
26 1 1.6886 1.8463 -0.8900
27 1 3.8511 0.5646 0.8384
28 1 3.9785 2.1760 0.0932
29 1 5.6271 1.8682 -1.2298
30 1 6.0083 0.1593 -0.9098
31 1 8.8876 1.0673 -2.9015
32 1 4.4414 -3.4885 0.4550
33 1 2.0790 -3.2061 -2.9534
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000097847481.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:09
Heat of formation + Delta-G solvation = -6.391090 kcal
Electronic energy + Delta-G solvation = -19425.663395 eV
Core-core repulsion = 16319.562252 eV
Total energy + Delta-G solvation = -3106.101143 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.083 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-42.02637 -39.26177 -37.88909 -37.40626 -34.85001 -33.90673 -32.27237 -31.03779
-28.40001 -27.09069 -25.62708 -25.00016 -23.83943 -22.33890 -18.93010 -18.66941
-17.97268 -17.52862 -17.10589 -16.97424 -16.46680 -15.89760 -15.88023 -15.59550
-15.01180 -14.70515 -14.34575 -13.55937 -13.42774 -13.16250 -12.97569 -12.88382
-12.65867 -12.42585 -12.29073 -12.19893 -12.09344 -11.92195 -11.53806 -11.23398
-10.63381 -10.57503 -10.24578 -9.88472 -9.47551 -8.20753 -6.29259 -0.05913
0.09217 1.23255 1.38948 1.39244 1.50141 2.36865 2.70646 2.79413
2.94751 3.12919 3.26902 3.35997 3.84809 4.08968 4.17852 4.32245
4.43858 4.53924 4.56362 4.60216 4.70052 4.84331 4.90175 5.07223
5.17178 5.31206 5.64937 5.93762 5.96026 6.21895 6.31978 6.41569
6.86426 7.11462 7.39637 8.89939
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.019143 B = 0.007685 C = 0.007312
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1462.351007 B = 3642.358875 C = 3828.408781
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.411 6.411
3 C 0.074 3.926
4 C 0.053 3.947
5 N -0.488 5.488
6 C 0.214 3.786
7 C -0.522 4.522
8 H 0.072 0.928
9 C 0.008 3.992
10 N -0.931 5.931
11 Si 0.955 3.045
12 H -0.269 1.269
13 H -0.284 1.284
14 H -0.267 1.267
15 C 0.401 3.599
16 N -0.563 5.563
17 C 0.296 3.704
18 N -0.526 5.526
19 C 0.152 3.848
20 C -0.113 4.113
21 Cl -0.031 7.031
22 H 0.084 0.916
23 H 0.053 0.947
24 H 0.045 0.955
25 H 0.077 0.923
26 H 0.058 0.942
27 H 0.043 0.957
28 H 0.100 0.900
29 H 0.021 0.979
30 H -0.018 1.018
31 H 0.263 0.737
32 H 0.221 0.779
33 H 0.201 0.799
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.720 -3.379 3.403 15.482
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.331 6.331
3 C -0.003 4.003
4 C -0.074 4.074
5 N -0.212 5.212
6 C 0.090 3.910
7 C -0.560 4.560
8 H 0.090 0.910
9 C -0.191 4.191
10 N -0.571 5.571
11 Si 0.780 3.220
12 H -0.194 1.194
13 H -0.210 1.210
14 H -0.191 1.191
15 C 0.164 3.836
16 N -0.282 5.282
17 C 0.007 3.993
18 N -0.240 5.240
19 C -0.013 4.013
20 C -0.146 4.146
21 Cl -0.002 7.002
22 H 0.102 0.898
23 H 0.072 0.928
24 H 0.063 0.937
25 H 0.095 0.905
26 H 0.076 0.924
27 H 0.061 0.939
28 H 0.118 0.882
29 H 0.039 0.961
30 H 0.000 1.000
31 H 0.072 0.928
32 H 0.237 0.763
33 H 0.218 0.782
Dipole moment (debyes) X Y Z Total
from point charges -14.352 -3.741 3.637 15.271
hybrid contribution 0.615 0.609 -0.793 1.174
sum -13.737 -3.132 2.844 14.373
Atomic orbital electron populations
1.22774 0.79928 1.02891 1.00639 1.87884 1.21103 1.28554 1.95528
1.22577 0.91647 0.84823 1.01248 1.22362 0.95252 1.00238 0.89545
1.60240 1.22218 1.04981 1.33780 1.19534 0.79954 0.95214 0.96315
1.21544 0.93206 1.47387 0.93877 0.90996 1.25774 0.96092 0.95134
1.02084 1.70071 1.00537 1.50226 1.36308 0.85587 0.77356 0.78863
0.80192 1.19423 1.21009 1.19117 1.19835 0.86173 0.90703 0.86897
1.68540 1.24010 1.08262 1.27366 1.25252 0.90601 0.88049 0.95429
1.68519 1.11372 1.39810 1.04346 1.23520 0.94412 0.87934 0.95402
1.22522 1.02516 0.94388 0.95185 1.98326 1.81496 1.70859 1.49544
0.89775 0.92846 0.93664 0.90520 0.92418 0.93851 0.88207 0.96131
1.00047 0.92791 0.76262 0.78206
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.72 11.01 113.37 1.25 1.97 16
2 O -0.41 -12.28 8.60 -148.98 -1.28 -13.56 16
3 C 0.07 2.10 6.25 71.98 0.45 2.55 16
4 C 0.05 1.88 5.52 86.30 0.48 2.35 16
5 N -0.49 -20.93 3.87 -705.48 -2.73 -23.66 16
6 C 0.21 11.20 4.73 85.55 0.40 11.60 16
7 C -0.52 -29.08 8.96 25.60 0.23 -28.85 16
8 H 0.07 3.92 7.19 -2.91 -0.02 3.90 16
9 C 0.01 0.43 5.46 84.65 0.46 0.89 16
10 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16
11 Si 0.95 44.53 29.54 68.60 2.03 46.55 16
12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16
13 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16
14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16
15 C 0.40 16.55 3.31 133.18 0.44 16.99 16
16 N -0.56 -22.94 9.26 -197.51 -1.83 -24.77 16
17 C 0.30 10.04 12.28 180.90 2.22 12.26 16
18 N -0.53 -17.09 10.43 -200.23 -2.09 -19.18 16
19 C 0.15 4.80 11.11 84.57 0.94 5.74 16
20 C -0.11 -4.14 5.90 22.62 0.13 -4.01 16
21 Cl -0.03 -1.05 27.97 -2.72 -0.08 -1.13 16
22 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16
23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16
25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
27 H 0.04 1.63 7.43 -2.39 -0.02 1.61 16
28 H 0.10 3.33 7.61 -2.39 -0.02 3.31 16
29 H 0.02 1.12 7.61 -2.39 -0.02 1.11 16
30 H -0.02 -1.08 7.62 -2.39 -0.02 -1.10 16
31 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16
32 H 0.22 5.69 8.06 -2.91 -0.02 5.66 16
33 H 0.20 4.69 8.06 -2.91 -0.02 4.66 16
Total: -1.00 -67.07 301.39 2.43 -64.65
By element:
Atomic # 1 Polarization: 3.90 SS G_CDS: 1.11 Total: 5.01 kcal
Atomic # 6 Polarization: 14.50 SS G_CDS: 7.01 Total: 21.50 kcal
Atomic # 7 Polarization: -116.66 SS G_CDS: -6.36 Total: -123.02 kcal
Atomic # 8 Polarization: -12.28 SS G_CDS: -1.28 Total: -13.56 kcal
Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal
Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal
Total: -67.07 2.43 -64.65 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000097847481.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.254 kcal
(2) G-P(sol) polarization free energy of solvation -67.073 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.818 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.646 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.391 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds