Wall clock time and date at job start Mon Mar 30 2020 01:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99956 * 2 1 4 4 C 1.53001 * 109.46874 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47269 * 65.24284 * 4 3 2 6 6 C 1.46904 * 110.99838 * 160.81462 * 5 4 3 7 7 C 1.50695 * 109.46902 * 199.61928 * 6 5 4 8 8 H 1.08007 * 120.00186 * 5.01061 * 7 6 5 9 9 C 1.37875 * 120.00074 * 185.01542 * 7 6 5 10 10 N 1.31516 * 120.00049 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00087 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47460 * 89.99557 * 11 9 7 13 13 H 1.48508 * 109.46901 * 209.99692 * 11 9 7 14 14 H 1.48503 * 109.47139 * 329.99260 * 11 9 7 15 15 C 1.38599 * 110.99624 * 284.76571 * 5 4 3 16 16 N 1.32956 * 120.54097 * 301.55257 * 15 5 4 17 17 C 1.31763 * 120.70295 * 180.02562 * 16 15 5 18 18 N 1.31776 * 121.85938 * 359.97438 * 17 16 15 19 19 C 1.32564 * 121.01505 * 0.02562 * 18 17 16 20 20 C 1.38202 * 119.18450 * 0.02562 * 19 18 17 21 21 Cl 1.73596 * 120.84605 * 179.97438 * 20 19 18 22 22 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46965 * 299.99966 * 1 2 3 24 24 H 1.08998 * 109.47536 * 60.00075 * 1 2 3 25 25 H 1.08994 * 109.47548 * 59.99980 * 3 2 1 26 26 H 1.08998 * 109.46652 * 299.99576 * 3 2 1 27 27 H 1.09000 * 109.47133 * 305.24121 * 4 3 2 28 28 H 1.08997 * 109.47021 * 185.24188 * 4 3 2 29 29 H 1.09000 * 109.46769 * 319.61933 * 6 5 4 30 30 H 1.08997 * 109.47267 * 79.61677 * 6 5 4 31 31 H 0.96995 * 120.00134 * 180.02562 * 10 9 7 32 32 H 1.08003 * 119.07628 * 180.02562 * 17 16 15 33 33 H 1.08000 * 120.40374 * 179.72803 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9773 0.5680 -1.2587 6 6 5.3997 0.8387 -1.5065 7 6 5.7030 0.6327 -2.9682 8 1 4.9035 0.4101 -3.6594 9 6 7.0010 0.7282 -3.4231 10 7 7.9745 0.9997 -2.5815 11 14 7.3768 0.4735 -5.2351 12 1 7.2949 1.7749 -5.9454 13 1 8.7445 -0.0860 -5.3830 14 1 6.3900 -0.4712 -5.8173 15 6 3.7235 -0.7946 -1.2598 16 7 4.2442 -1.5796 -0.3216 17 6 4.0054 -2.8754 -0.3199 18 7 3.2487 -3.4445 -1.2365 19 6 2.6939 -2.7289 -2.2047 20 6 2.9171 -1.3657 -2.2478 21 17 2.2125 -0.3874 -3.4968 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 3.8511 0.5646 0.8384 28 1 3.9785 2.1760 0.0932 29 1 5.6271 1.8682 -1.2298 30 1 6.0083 0.1593 -0.9098 31 1 8.8876 1.0673 -2.9015 32 1 4.4414 -3.4885 0.4550 33 1 2.0790 -3.2061 -2.9534 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097847481.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:09 Heat of formation + Delta-G solvation = -6.391090 kcal Electronic energy + Delta-G solvation = -19425.663395 eV Core-core repulsion = 16319.562252 eV Total energy + Delta-G solvation = -3106.101143 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.02637 -39.26177 -37.88909 -37.40626 -34.85001 -33.90673 -32.27237 -31.03779 -28.40001 -27.09069 -25.62708 -25.00016 -23.83943 -22.33890 -18.93010 -18.66941 -17.97268 -17.52862 -17.10589 -16.97424 -16.46680 -15.89760 -15.88023 -15.59550 -15.01180 -14.70515 -14.34575 -13.55937 -13.42774 -13.16250 -12.97569 -12.88382 -12.65867 -12.42585 -12.29073 -12.19893 -12.09344 -11.92195 -11.53806 -11.23398 -10.63381 -10.57503 -10.24578 -9.88472 -9.47551 -8.20753 -6.29259 -0.05913 0.09217 1.23255 1.38948 1.39244 1.50141 2.36865 2.70646 2.79413 2.94751 3.12919 3.26902 3.35997 3.84809 4.08968 4.17852 4.32245 4.43858 4.53924 4.56362 4.60216 4.70052 4.84331 4.90175 5.07223 5.17178 5.31206 5.64937 5.93762 5.96026 6.21895 6.31978 6.41569 6.86426 7.11462 7.39637 8.89939 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.007685 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.351007 B = 3642.358875 C = 3828.408781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.411 6.411 3 C 0.074 3.926 4 C 0.053 3.947 5 N -0.488 5.488 6 C 0.214 3.786 7 C -0.522 4.522 8 H 0.072 0.928 9 C 0.008 3.992 10 N -0.931 5.931 11 Si 0.955 3.045 12 H -0.269 1.269 13 H -0.284 1.284 14 H -0.267 1.267 15 C 0.401 3.599 16 N -0.563 5.563 17 C 0.296 3.704 18 N -0.526 5.526 19 C 0.152 3.848 20 C -0.113 4.113 21 Cl -0.031 7.031 22 H 0.084 0.916 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.100 0.900 29 H 0.021 0.979 30 H -0.018 1.018 31 H 0.263 0.737 32 H 0.221 0.779 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.720 -3.379 3.403 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.331 6.331 3 C -0.003 4.003 4 C -0.074 4.074 5 N -0.212 5.212 6 C 0.090 3.910 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.191 4.191 10 N -0.571 5.571 11 Si 0.780 3.220 12 H -0.194 1.194 13 H -0.210 1.210 14 H -0.191 1.191 15 C 0.164 3.836 16 N -0.282 5.282 17 C 0.007 3.993 18 N -0.240 5.240 19 C -0.013 4.013 20 C -0.146 4.146 21 Cl -0.002 7.002 22 H 0.102 0.898 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.118 0.882 29 H 0.039 0.961 30 H 0.000 1.000 31 H 0.072 0.928 32 H 0.237 0.763 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -14.352 -3.741 3.637 15.271 hybrid contribution 0.615 0.609 -0.793 1.174 sum -13.737 -3.132 2.844 14.373 Atomic orbital electron populations 1.22774 0.79928 1.02891 1.00639 1.87884 1.21103 1.28554 1.95528 1.22577 0.91647 0.84823 1.01248 1.22362 0.95252 1.00238 0.89545 1.60240 1.22218 1.04981 1.33780 1.19534 0.79954 0.95214 0.96315 1.21544 0.93206 1.47387 0.93877 0.90996 1.25774 0.96092 0.95134 1.02084 1.70071 1.00537 1.50226 1.36308 0.85587 0.77356 0.78863 0.80192 1.19423 1.21009 1.19117 1.19835 0.86173 0.90703 0.86897 1.68540 1.24010 1.08262 1.27366 1.25252 0.90601 0.88049 0.95429 1.68519 1.11372 1.39810 1.04346 1.23520 0.94412 0.87934 0.95402 1.22522 1.02516 0.94388 0.95185 1.98326 1.81496 1.70859 1.49544 0.89775 0.92846 0.93664 0.90520 0.92418 0.93851 0.88207 0.96131 1.00047 0.92791 0.76262 0.78206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -12.28 8.60 -148.98 -1.28 -13.56 16 3 C 0.07 2.10 6.25 71.98 0.45 2.55 16 4 C 0.05 1.88 5.52 86.30 0.48 2.35 16 5 N -0.49 -20.93 3.87 -705.48 -2.73 -23.66 16 6 C 0.21 11.20 4.73 85.55 0.40 11.60 16 7 C -0.52 -29.08 8.96 25.60 0.23 -28.85 16 8 H 0.07 3.92 7.19 -2.91 -0.02 3.90 16 9 C 0.01 0.43 5.46 84.65 0.46 0.89 16 10 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 11 Si 0.95 44.53 29.54 68.60 2.03 46.55 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 C 0.40 16.55 3.31 133.18 0.44 16.99 16 16 N -0.56 -22.94 9.26 -197.51 -1.83 -24.77 16 17 C 0.30 10.04 12.28 180.90 2.22 12.26 16 18 N -0.53 -17.09 10.43 -200.23 -2.09 -19.18 16 19 C 0.15 4.80 11.11 84.57 0.94 5.74 16 20 C -0.11 -4.14 5.90 22.62 0.13 -4.01 16 21 Cl -0.03 -1.05 27.97 -2.72 -0.08 -1.13 16 22 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.63 7.43 -2.39 -0.02 1.61 16 28 H 0.10 3.33 7.61 -2.39 -0.02 3.31 16 29 H 0.02 1.12 7.61 -2.39 -0.02 1.11 16 30 H -0.02 -1.08 7.62 -2.39 -0.02 -1.10 16 31 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.22 5.69 8.06 -2.91 -0.02 5.66 16 33 H 0.20 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -67.07 301.39 2.43 -64.65 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.11 Total: 5.01 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 7.01 Total: 21.50 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -6.36 Total: -123.02 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.28 Total: -13.56 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -67.07 2.43 -64.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097847481.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.254 kcal (2) G-P(sol) polarization free energy of solvation -67.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds