Wall clock time and date at job start Mon Mar 30 2020 01:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46948 * 2 1 4 4 N 1.46501 * 109.47268 * 185.56312 * 3 2 1 5 5 C 1.36937 * 119.99861 * 85.63964 * 4 3 2 6 6 H 1.07999 * 119.99861 * 182.79536 * 5 4 3 7 7 C 1.38814 * 120.00018 * 2.79804 * 5 4 3 8 8 N 1.31611 * 120.00083 * 332.27598 * 7 5 4 9 9 Si 1.86805 * 119.99819 * 152.27422 * 7 5 4 10 10 H 1.48501 * 109.46999 * 94.99779 * 9 7 5 11 11 H 1.48491 * 109.46924 * 214.99683 * 9 7 5 12 12 H 1.48496 * 109.47239 * 334.99937 * 9 7 5 13 13 C 1.46503 * 119.99883 * 265.64514 * 4 3 2 14 14 C 1.50700 * 109.46952 * 263.71314 * 13 4 3 15 15 C 1.38210 * 119.99409 * 263.42925 * 14 13 4 16 16 C 1.38432 * 119.98499 * 179.78974 * 15 14 13 17 17 F 1.35107 * 120.01216 * 180.25574 * 16 15 14 18 18 C 1.38477 * 119.97778 * 0.49042 * 16 15 14 19 19 C 1.38161 * 119.98531 * 359.74114 * 18 16 15 20 20 C 1.38330 * 119.99192 * 83.70774 * 14 13 4 21 21 Cl 1.73597 * 119.98767 * 359.97438 * 20 14 13 22 22 H 1.08992 * 109.47553 * 299.99554 * 1 2 3 23 23 H 1.08999 * 109.47570 * 60.00410 * 1 2 3 24 24 H 1.09009 * 109.47065 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47291 * 240.00342 * 2 1 3 26 26 H 1.08997 * 109.47172 * 120.00453 * 2 1 3 27 27 H 1.08995 * 109.46771 * 65.56413 * 3 2 1 28 28 H 1.08996 * 109.47432 * 305.56175 * 3 2 1 29 29 H 0.97001 * 120.00041 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.47157 * 23.71584 * 13 4 3 31 31 H 1.09006 * 109.46909 * 143.71459 * 13 4 3 32 32 H 1.08005 * 120.00299 * 359.97438 * 15 14 13 33 33 H 1.08000 * 120.00642 * 179.72719 * 18 16 15 34 34 H 1.08004 * 119.99261 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4988 1.4448 -0.1339 5 6 4.0724 1.3939 -1.3763 6 1 5.1471 1.3500 -1.4735 7 6 3.2725 1.3989 -2.5108 8 7 2.0491 0.9169 -2.4555 9 14 3.9326 2.0898 -4.1160 10 1 4.4833 0.9847 -4.9411 11 1 2.8330 2.7595 -4.8558 12 1 5.0062 3.0741 -3.8269 13 6 4.3440 1.5013 1.0614 14 6 4.7531 2.9284 1.3203 15 6 5.9774 3.3882 0.8733 16 6 6.3512 4.7004 1.1075 17 9 7.5457 5.1518 0.6663 18 6 5.5023 5.5488 1.7982 19 6 4.2807 5.0868 2.2487 20 6 3.9055 3.7764 2.0103 21 17 2.3706 3.1964 2.5771 22 1 -0.3634 0.5137 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0278 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.7602 1.9267 0.9356 28 1 1.5976 1.9843 -0.8359 29 1 1.4902 0.9201 -3.2484 30 1 3.7874 1.1217 1.9182 31 1 5.2336 0.8907 0.9066 32 1 6.6412 2.7246 0.3390 33 1 5.7953 6.5714 1.9850 34 1 3.6184 5.7486 2.7871 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098060032.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:42 Heat of formation + Delta-G solvation = -2.555253 kcal Electronic energy + Delta-G solvation = -18992.379197 eV Core-core repulsion = 15866.524427 eV Total energy + Delta-G solvation = -3125.854770 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.67585 -38.98719 -36.14605 -36.00361 -32.59087 -31.68058 -30.30340 -29.66634 -25.87941 -25.47650 -22.61972 -22.27618 -20.91664 -19.77695 -17.23846 -16.55232 -16.25646 -16.15712 -15.43650 -15.08871 -14.04607 -13.82277 -13.73028 -13.32353 -13.09253 -13.05075 -12.56969 -12.28101 -12.03678 -11.58041 -11.31208 -11.25010 -11.01648 -10.74568 -10.67155 -10.51621 -10.16908 -9.93650 -9.89397 -9.72242 -8.99432 -8.70601 -8.22203 -8.16255 -6.94384 -5.79174 -3.04089 1.29061 1.44918 2.50057 3.38280 3.48248 3.51983 3.74381 4.45672 4.52286 4.91780 5.02076 5.28000 5.42441 5.53065 5.62365 5.96160 5.98349 6.12803 6.28162 6.30668 6.31567 6.38402 6.53071 6.65019 6.79783 6.84309 7.02456 7.03948 7.30174 7.38697 7.69780 7.88520 8.17632 8.33558 9.23293 9.84665 10.28561 11.21705 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.008780 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.577285 B = 3188.154696 C = 4594.990681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.119 4.119 3 C 0.158 3.842 4 N -0.585 5.585 5 C -0.257 4.257 6 H 0.074 0.926 7 C 0.009 3.991 8 N -0.881 5.881 9 Si 0.881 3.119 10 H -0.291 1.291 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.180 3.820 14 C -0.041 4.041 15 C -0.129 4.129 16 C 0.097 3.903 17 F -0.143 7.143 18 C -0.162 4.162 19 C -0.088 4.088 20 C -0.040 4.040 21 Cl -0.060 7.060 22 H 0.026 0.974 23 H 0.054 0.946 24 H 0.029 0.971 25 H 0.096 0.904 26 H 0.011 0.989 27 H 0.028 0.972 28 H 0.082 0.918 29 H 0.251 0.749 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.614 5.350 9.798 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.159 4.159 3 C 0.034 3.966 4 N -0.303 5.303 5 C -0.385 4.385 6 H 0.092 0.908 7 C -0.189 4.189 8 N -0.526 5.526 9 Si 0.710 3.290 10 H -0.218 1.218 11 H -0.216 1.216 12 H -0.207 1.207 13 C 0.051 3.949 14 C -0.046 4.046 15 C -0.149 4.149 16 C 0.078 3.922 17 F -0.122 7.122 18 C -0.182 4.182 19 C -0.107 4.107 20 C -0.068 4.068 21 Cl -0.031 7.031 22 H 0.046 0.954 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.114 0.886 26 H 0.030 0.970 27 H 0.046 0.954 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.355 5.251 9.661 11.245 hybrid contribution 0.381 0.540 -1.120 1.300 sum 2.736 5.791 8.541 10.676 Atomic orbital electron populations 1.21575 0.98581 0.98971 0.99963 1.22023 0.92907 1.00482 1.00441 1.21330 0.81596 0.94901 0.98816 1.44152 1.01611 1.83939 1.00636 1.19171 0.91638 1.45132 0.82542 0.90781 1.24683 0.96129 1.00767 0.97344 1.70298 1.09494 1.44682 1.28078 0.86599 0.78175 0.79747 0.84468 1.21809 1.21592 1.20700 1.19839 0.95628 0.88183 0.91246 1.21032 0.90904 1.01143 0.91517 1.20982 0.97707 0.94155 1.02064 1.17792 0.82133 0.93415 0.98870 1.91473 1.43526 1.89551 1.87663 1.20849 0.94740 1.00166 1.02429 1.20765 0.96047 0.93861 1.00002 1.20777 0.89067 0.94335 1.02605 1.98338 1.28732 1.88567 1.87494 0.95440 0.92724 0.95140 0.88618 0.97031 0.95421 0.89966 0.93839 0.91971 0.92645 0.84319 0.84754 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.91 37.16 0.37 -2.25 16 2 C -0.12 -2.68 5.52 -26.73 -0.15 -2.82 16 3 C 0.16 3.65 4.91 -4.04 -0.02 3.63 16 4 N -0.58 -13.71 2.54 -174.61 -0.44 -14.15 16 5 C -0.26 -6.65 9.67 -15.06 -0.15 -6.79 16 6 H 0.07 1.89 7.97 -52.49 -0.42 1.47 16 7 C 0.01 0.23 5.02 -17.43 -0.09 0.14 16 8 N -0.88 -23.67 8.18 55.49 0.45 -23.21 16 9 Si 0.88 21.25 29.64 -169.99 -5.04 16.21 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.18 3.51 5.36 -5.19 -0.03 3.48 16 14 C -0.04 -0.74 5.42 -104.60 -0.57 -1.30 16 15 C -0.13 -2.21 9.65 -39.52 -0.38 -2.59 16 16 C 0.10 1.55 7.30 -39.42 -0.29 1.26 16 17 F -0.14 -2.27 17.27 2.25 0.04 -2.23 16 18 C -0.16 -2.27 10.03 -39.52 -0.40 -2.66 16 19 C -0.09 -1.25 9.83 -39.56 -0.39 -1.64 16 20 C -0.04 -0.67 6.31 -39.50 -0.25 -0.92 16 21 Cl -0.06 -0.98 24.24 -51.86 -1.26 -2.23 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 25 H 0.10 2.48 6.36 -51.93 -0.33 2.15 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.03 0.59 4.41 -51.93 -0.23 0.36 16 28 H 0.08 2.17 5.89 -51.93 -0.31 1.86 16 29 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.06 1.15 7.06 -51.93 -0.37 0.78 16 31 H 0.06 1.05 7.99 -51.93 -0.41 0.63 16 32 H 0.14 2.29 8.06 -52.48 -0.42 1.86 16 33 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 296.85 15.07 4.47 4.47 Total: -1.00 -26.80 296.85 -8.26 -35.06 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.16 Total: -1.45 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -2.33 Total: -12.47 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.01 Total: -37.37 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.04 Total: 16.21 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.26 Total: -2.23 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.80 -8.26 -35.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098060032.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.507 kcal (2) G-P(sol) polarization free energy of solvation -26.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds