Wall clock time and date at job start Mon Mar 30 2020 01:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.47139 * 2 1 4 4 C 1.46897 * 110.99698 * 299.32487 * 3 2 1 5 5 C 1.50698 * 109.47193 * 293.53777 * 4 3 2 6 6 H 1.08003 * 120.00088 * 354.96795 * 5 4 3 7 7 C 1.37876 * 120.00019 * 174.96521 * 5 4 3 8 8 N 1.31508 * 120.00285 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99931 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47105 * 90.00082 * 9 7 5 11 11 H 1.48499 * 109.47085 * 210.00514 * 9 7 5 12 12 H 1.48502 * 109.47109 * 330.00065 * 9 7 5 13 13 C 1.46904 * 110.99777 * 63.27808 * 3 2 1 14 14 C 1.50692 * 109.47521 * 66.04731 * 13 3 2 15 15 C 1.38215 * 119.99517 * 259.72463 * 14 13 3 16 16 C 1.38436 * 119.98572 * 179.78719 * 15 14 13 17 17 F 1.35100 * 120.00814 * 180.25617 * 16 15 14 18 18 C 1.38477 * 119.97577 * 0.48391 * 16 15 14 19 19 C 1.38162 * 119.98781 * 359.74429 * 18 16 15 20 20 C 1.38329 * 119.99371 * 79.99157 * 14 13 3 21 21 Cl 1.73595 * 119.98751 * 0.02562 * 20 14 13 22 22 H 1.09004 * 109.47022 * 180.61501 * 1 2 3 23 23 H 1.09000 * 109.47124 * 300.60841 * 1 2 3 24 24 H 1.08999 * 109.47403 * 60.61210 * 1 2 3 25 25 H 1.09000 * 109.47180 * 239.99991 * 2 1 3 26 26 H 1.09001 * 109.46790 * 119.99999 * 2 1 3 27 27 H 1.09001 * 109.47342 * 53.54162 * 4 3 2 28 28 H 1.09003 * 109.47078 * 173.53799 * 4 3 2 29 29 H 0.96998 * 120.00719 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46667 * 186.05124 * 13 3 2 31 31 H 1.09005 * 109.47072 * 306.04191 * 13 3 2 32 32 H 1.08000 * 120.00270 * 359.97438 * 15 14 13 33 33 H 1.08000 * 120.00322 * 179.72548 * 18 16 15 34 34 H 1.08002 * 119.99468 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5619 2.1052 -1.1957 5 6 2.2056 1.5066 -2.4198 6 1 2.9477 0.7291 -2.3142 7 6 1.8470 1.9516 -3.6746 8 7 0.9437 2.8986 -3.8032 9 14 2.6445 1.2091 -5.1920 10 1 1.8473 0.0429 -5.6497 11 1 2.6973 2.2272 -6.2718 12 1 4.0229 0.7671 -4.8607 13 6 1.6137 2.0869 1.2250 14 6 2.3011 1.4637 2.4124 15 6 1.6181 0.5701 3.2157 16 6 2.2512 -0.0057 4.3039 17 9 1.5856 -0.8832 5.0863 18 6 3.5653 0.3216 4.5927 19 6 4.2456 1.2186 3.7918 20 6 3.6139 1.7902 2.7014 21 17 4.4688 2.9184 1.6965 22 1 -0.3633 -1.0276 0.0110 23 1 -0.3633 0.5233 0.8845 24 1 -0.3634 0.5043 -0.8954 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.4782 2.0217 -1.2774 28 1 1.8403 3.1560 -1.1158 29 1 0.6917 3.2119 -4.6859 30 1 1.8954 3.1373 1.1521 31 1 0.5335 2.0081 1.3479 32 1 0.5917 0.3188 2.9927 33 1 4.0582 -0.1239 5.4442 34 1 5.2704 1.4743 4.0172 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098060038.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:11 Heat of formation + Delta-G solvation = -42.089167 kcal Electronic energy + Delta-G solvation = -18628.899241 eV Core-core repulsion = 15501.330152 eV Total energy + Delta-G solvation = -3127.569089 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.93003 -40.60582 -38.48292 -37.22499 -34.78787 -32.97875 -31.49835 -30.82223 -28.91988 -26.38125 -24.98461 -23.84241 -22.92412 -20.92497 -18.43495 -18.12176 -17.73378 -17.50930 -16.90743 -16.64263 -16.38398 -15.92044 -15.40218 -14.81878 -14.59265 -14.44550 -14.05265 -13.99551 -13.58930 -13.24577 -13.10480 -12.84213 -12.69612 -12.52511 -12.50670 -12.25237 -12.13720 -11.91382 -11.57269 -11.45120 -11.22563 -10.56743 -10.07002 -9.49457 -8.88007 -8.15652 -6.23762 -0.02960 0.10681 1.29389 1.41502 1.42487 1.53717 2.37449 2.45148 3.12750 3.17391 3.46983 3.64635 3.70501 4.05320 4.19997 4.27017 4.37339 4.48524 4.55014 4.69254 4.76019 4.80286 4.95569 5.02528 5.03664 5.05220 5.24536 5.32726 5.41290 5.52600 5.70997 5.73156 6.11855 6.39206 6.67006 6.92641 7.45072 8.94673 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.005424 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.802232 B = 5160.830051 C = 5814.855304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.062 3.938 3 N -0.526 5.526 4 C 0.208 3.792 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.086 3.914 14 C -0.042 4.042 15 C -0.141 4.141 16 C 0.094 3.906 17 F -0.140 7.140 18 C -0.135 4.135 19 C -0.080 4.080 20 C -0.040 4.040 21 Cl -0.063 7.063 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.035 0.965 25 H 0.059 0.941 26 H 0.074 0.926 27 H -0.017 1.017 28 H -0.003 1.003 29 H 0.262 0.738 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.146 0.854 33 H 0.173 0.827 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.089 -4.992 17.432 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.066 4.066 3 N -0.250 5.250 4 C 0.082 3.918 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.193 4.193 8 N -0.575 5.575 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.042 4.042 14 C -0.043 4.043 15 C -0.160 4.160 16 C 0.074 3.926 17 F -0.118 7.118 18 C -0.153 4.153 19 C -0.098 4.098 20 C -0.068 4.068 21 Cl -0.034 7.034 22 H 0.090 0.910 23 H 0.078 0.922 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.001 0.999 28 H 0.015 0.985 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.163 0.837 33 H 0.191 0.809 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.570 -4.822 17.213 18.450 hybrid contribution -0.904 0.032 -1.168 1.477 sum 3.666 -4.790 16.045 17.141 Atomic orbital electron populations 1.22279 0.98286 1.02223 1.01011 1.21962 0.92987 0.90338 1.01308 1.62239 1.59403 1.02387 1.00937 1.19390 0.92957 0.92371 0.87077 1.21399 1.22185 1.20465 0.91052 0.92370 1.25782 0.95779 0.95612 1.02127 1.70068 1.33232 1.30022 1.24148 0.85513 0.79082 0.78061 0.78758 1.19944 1.20978 1.19213 1.21037 0.97061 0.97979 0.88120 1.19482 0.92872 0.96368 0.95617 1.21056 1.01789 0.98207 0.94951 1.17761 0.91757 0.91874 0.91175 1.91502 1.80675 1.66546 1.73108 1.21339 0.92453 0.99366 1.02187 1.21165 1.01459 0.95182 0.92003 1.21045 0.92988 0.97565 0.95185 1.98398 1.76384 1.59695 1.68962 0.91040 0.92225 0.94547 0.92275 0.90817 0.99915 0.98483 0.92894 0.90841 0.93498 0.83675 0.80949 0.81584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.18 9.25 71.98 0.67 -5.52 16 2 C 0.06 2.33 5.64 86.30 0.49 2.81 16 3 N -0.53 -21.93 4.69 -905.36 -4.25 -26.17 16 4 C 0.21 10.78 4.50 85.56 0.38 11.17 16 5 C -0.51 -28.72 8.41 25.60 0.22 -28.51 16 6 H 0.06 3.25 7.33 -2.91 -0.02 3.23 16 7 C 0.00 0.27 5.46 84.66 0.46 0.73 16 8 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 9 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 C 0.09 2.99 4.32 85.55 0.37 3.36 16 14 C -0.04 -1.21 4.57 -19.85 -0.09 -1.30 16 15 C -0.14 -3.48 8.64 22.31 0.19 -3.29 16 16 C 0.09 2.05 7.30 22.37 0.16 2.22 16 17 F -0.14 -3.10 17.27 44.97 0.78 -2.33 16 18 C -0.13 -2.42 10.03 22.31 0.22 -2.20 16 19 C -0.08 -1.60 9.83 22.28 0.22 -1.38 16 20 C -0.04 -1.10 6.31 22.32 0.14 -0.96 16 21 Cl -0.06 -1.95 27.51 -2.72 -0.07 -2.02 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.06 1.83 6.03 -2.39 -0.01 1.82 16 24 H 0.04 1.51 6.31 -2.39 -0.02 1.49 16 25 H 0.06 2.47 6.97 -2.39 -0.02 2.46 16 26 H 0.07 2.42 6.47 -2.39 -0.02 2.41 16 27 H -0.02 -0.93 6.01 -2.39 -0.01 -0.94 16 28 H 0.00 -0.17 7.92 -2.39 -0.02 -0.18 16 29 H 0.26 14.85 8.31 -92.71 -0.77 14.07 16 30 H 0.07 2.71 7.14 -2.39 -0.02 2.70 16 31 H 0.05 1.57 5.95 -2.38 -0.01 1.56 16 32 H 0.15 3.35 7.75 -2.91 -0.02 3.32 16 33 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -62.54 298.32 3.31 -59.23 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 1.11 Total: 3.21 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 3.43 Total: -22.86 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -3.96 Total: -81.76 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.07 Total: -2.02 kcal Total: -62.54 3.31 -59.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098060038.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.138 kcal (2) G-P(sol) polarization free energy of solvation -62.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds