Wall clock time and date at job start Mon Mar 30 2020 01:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46904 * 110.99963 * 183.95369 * 12 2 1 14 14 C 1.46905 * 110.99800 * 60.00278 * 12 2 1 15 15 C 1.50700 * 109.47326 * 189.99540 * 14 12 2 16 16 C 1.38205 * 119.99409 * 259.72516 * 15 14 12 17 17 C 1.38439 * 119.98366 * 179.79068 * 16 15 14 18 18 F 1.35099 * 120.01434 * 180.25925 * 17 16 15 19 19 C 1.38478 * 119.97443 * 0.48219 * 17 16 15 20 20 C 1.38173 * 119.99016 * 359.75077 * 19 17 16 21 21 C 1.38335 * 119.98661 * 79.99991 * 15 14 12 22 22 Cl 1.73594 * 119.99136 * 0.02562 * 21 15 14 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.46991 * 60.00787 * 13 12 2 28 28 H 1.08998 * 109.46942 * 180.02562 * 13 12 2 29 29 H 1.08998 * 109.47155 * 300.00314 * 13 12 2 30 30 H 1.08997 * 109.47089 * 310.00066 * 14 12 2 31 31 H 1.09006 * 109.47115 * 69.99884 * 14 12 2 32 32 H 1.07997 * 120.00802 * 359.97438 * 16 15 14 33 33 H 1.08001 * 120.00745 * 179.72469 * 19 17 16 34 34 H 1.07998 * 119.99169 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5486 -0.0265 -2.4211 15 6 1.8580 -0.8912 -3.6159 16 6 2.9569 -0.6108 -4.4057 17 6 3.2433 -1.4079 -5.5008 18 9 4.3204 -1.1375 -6.2702 19 6 2.4228 -2.4797 -5.8099 20 6 1.3217 -2.7562 -5.0224 21 6 1.0386 -1.9620 -3.9251 22 17 -0.3460 -2.3088 -2.9371 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.9026 -0.5284 4.4375 27 1 3.8029 -1.3533 -0.3067 28 1 3.8209 -1.3110 -2.0862 29 1 3.9187 0.2050 -1.1591 30 1 0.4722 0.1323 -2.3564 31 1 2.0519 0.9345 -2.5281 32 1 3.5937 0.2281 -4.1670 33 1 2.6433 -3.0993 -6.6666 34 1 0.6815 -3.5919 -5.2636 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098060048.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:14 Heat of formation + Delta-G solvation = -30.064732 kcal Electronic energy + Delta-G solvation = -18738.422954 eV Core-core repulsion = 15611.375283 eV Total energy + Delta-G solvation = -3127.047671 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.94037 -40.57077 -38.55523 -37.23302 -34.92293 -33.11119 -31.54990 -31.25105 -28.55236 -26.49864 -25.27302 -23.83697 -22.65234 -21.17812 -18.89461 -18.30907 -17.67829 -17.51846 -17.09049 -16.68558 -16.14842 -15.72078 -15.34291 -14.97715 -14.64392 -14.61083 -14.21289 -14.02862 -13.75917 -13.48789 -13.38429 -12.75284 -12.62538 -12.48631 -12.41902 -12.13073 -12.07672 -12.02059 -11.55520 -11.37814 -11.03092 -10.71430 -10.07212 -9.49820 -8.99543 -8.25926 -6.28525 -0.03715 0.09603 1.28154 1.31386 1.35638 1.45443 2.32998 2.37931 3.07926 3.10853 3.35767 3.62555 3.69747 4.05125 4.17973 4.34731 4.41842 4.51420 4.58033 4.66667 4.69361 4.78962 4.85036 4.86977 5.02267 5.03532 5.06575 5.21891 5.28865 5.46052 5.66589 5.71874 6.01796 6.35148 6.68182 6.78469 7.35881 8.90304 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027161 B = 0.005556 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.643952 B = 5038.579742 C = 5548.774438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.187 3.813 3 H -0.008 1.008 4 C -0.502 4.502 5 H 0.044 0.956 6 C 0.013 3.987 7 N -0.948 5.948 8 Si 0.945 3.055 9 H -0.266 1.266 10 H -0.300 1.300 11 H -0.250 1.250 12 N -0.523 5.523 13 C 0.043 3.957 14 C 0.080 3.920 15 C -0.045 4.045 16 C -0.141 4.141 17 C 0.092 3.908 18 F -0.141 7.141 19 C -0.135 4.135 20 C -0.081 4.081 21 C -0.039 4.039 22 Cl -0.060 7.060 23 H 0.062 0.938 24 H 0.033 0.967 25 H 0.055 0.945 26 H 0.265 0.735 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.018 0.982 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.146 0.854 33 H 0.171 0.829 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 -0.130 -20.690 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.080 3.920 3 H 0.010 0.990 4 C -0.540 4.540 5 H 0.062 0.938 6 C -0.184 4.184 7 N -0.589 5.589 8 Si 0.773 3.227 9 H -0.193 1.193 10 H -0.228 1.228 11 H -0.174 1.174 12 N -0.247 5.247 13 C -0.106 4.106 14 C -0.047 4.047 15 C -0.046 4.046 16 C -0.161 4.161 17 C 0.072 3.928 18 F -0.119 7.119 19 C -0.154 4.154 20 C -0.099 4.099 21 C -0.066 4.066 22 Cl -0.031 7.031 23 H 0.080 0.920 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.036 0.964 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.164 0.836 33 H 0.189 0.811 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.769 -0.618 -20.430 20.626 hybrid contribution 0.200 1.314 0.850 1.578 sum -2.568 0.696 -19.580 19.760 Atomic orbital electron populations 1.22094 0.96879 1.01439 0.99247 1.19510 0.92641 0.91639 0.88239 0.99027 1.21203 1.30692 1.12281 0.89847 0.93805 1.25729 0.97399 0.99815 0.95440 1.70033 1.47884 1.42473 0.98502 0.85911 0.79399 0.80268 0.77141 1.19257 1.22846 1.17424 1.61867 1.10296 1.51886 1.00672 1.22175 0.87653 0.99329 1.01417 1.21214 1.02175 0.93903 0.87415 1.19497 0.93880 0.95487 0.95776 1.21083 0.98211 1.01798 0.94987 1.17790 0.86221 0.97291 0.91463 1.91501 1.52975 1.93543 1.73921 1.21346 0.94460 0.97350 1.02265 1.21173 0.97367 0.99235 0.92155 1.21026 0.92591 0.97819 0.95160 1.98393 1.40611 1.94214 1.69844 0.91955 0.94893 0.92635 0.92645 0.93086 0.91288 0.96364 0.88797 0.93510 0.83591 0.81114 0.81626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 8.47 71.98 0.61 -5.16 16 2 C 0.19 8.56 1.65 44.17 0.07 8.64 16 3 H -0.01 -0.36 7.20 -2.39 -0.02 -0.38 16 4 C -0.50 -28.17 8.51 25.60 0.22 -27.95 16 5 H 0.04 2.75 6.64 -2.91 -0.02 2.73 16 6 C 0.01 0.76 5.45 84.66 0.46 1.23 16 7 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 8 Si 0.95 44.63 24.37 68.60 1.67 46.31 16 9 H -0.27 -12.01 6.87 99.48 0.68 -11.32 16 10 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 11 H -0.25 -10.93 6.53 99.48 0.65 -10.29 16 12 N -0.52 -20.54 4.61 -906.01 -4.18 -24.73 16 13 C 0.04 1.62 9.01 127.69 1.15 2.77 16 14 C 0.08 2.50 4.32 85.56 0.37 2.87 16 15 C -0.04 -1.21 4.57 -19.85 -0.09 -1.30 16 16 C -0.14 -3.34 8.62 22.31 0.19 -3.15 16 17 C 0.09 1.96 7.30 22.37 0.16 2.13 16 18 F -0.14 -3.10 17.27 44.97 0.78 -2.32 16 19 C -0.14 -2.37 10.03 22.31 0.22 -2.15 16 20 C -0.08 -1.55 9.83 22.29 0.22 -1.33 16 21 C -0.04 -0.98 6.31 22.33 0.14 -0.84 16 22 Cl -0.06 -1.67 27.51 -2.72 -0.07 -1.74 16 23 H 0.06 2.15 6.20 -2.39 -0.01 2.13 16 24 H 0.03 1.41 3.27 -2.39 -0.01 1.40 16 25 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 26 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 27 H 0.05 2.26 6.23 -2.39 -0.01 2.25 16 28 H 0.07 2.27 6.43 -2.39 -0.02 2.25 16 29 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 2.88 5.04 -2.39 -0.01 2.87 16 31 H 0.05 1.37 7.98 -2.38 -0.02 1.35 16 32 H 0.15 3.17 8.03 -2.91 -0.02 3.15 16 33 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 34 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -64.23 290.03 3.26 -60.97 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.04 Total: 4.54 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 3.73 Total: -24.25 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -3.88 Total: -83.50 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.67 Total: 46.31 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.07 Total: -1.74 kcal Total: -64.23 3.26 -60.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098060048.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.902 kcal (2) G-P(sol) polarization free energy of solvation -64.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds