Wall clock time and date at job start Mon Mar 30 2020 01:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47168 * 2 1 4 4 C 1.50704 * 109.47140 * 240.00413 * 2 1 3 5 5 H 1.08003 * 119.99739 * 335.00117 * 4 2 1 6 6 C 1.37872 * 119.99925 * 155.00005 * 4 2 1 7 7 N 1.31515 * 119.99799 * 185.13000 * 6 4 2 8 8 Si 1.86798 * 120.00332 * 5.12705 * 6 4 2 9 9 H 1.48498 * 109.46951 * 84.82855 * 8 6 4 10 10 H 1.48498 * 109.47493 * 204.82685 * 8 6 4 11 11 H 1.48494 * 109.47059 * 324.83058 * 8 6 4 12 12 N 1.46893 * 109.47358 * 120.00173 * 2 1 3 13 13 C 1.46905 * 110.99816 * 58.95577 * 12 2 1 14 14 C 1.46895 * 111.00126 * 294.99883 * 12 2 1 15 15 C 1.50705 * 109.47334 * 189.99636 * 14 12 2 16 16 C 1.38211 * 119.99741 * 259.72803 * 15 14 12 17 17 C 1.38432 * 119.98587 * 179.79120 * 16 15 14 18 18 F 1.35101 * 120.01120 * 180.21062 * 17 16 15 19 19 C 1.38480 * 119.97848 * 0.48356 * 17 16 15 20 20 C 1.38161 * 119.98470 * 359.74511 * 19 17 16 21 21 C 1.38332 * 119.98884 * 80.00321 * 15 14 12 22 22 Cl 1.73597 * 119.98914 * 359.97438 * 21 15 14 23 23 H 1.09002 * 109.47019 * 294.93416 * 1 2 3 24 24 H 1.08996 * 109.47328 * 54.93847 * 1 2 3 25 25 H 1.08996 * 109.46990 * 174.94177 * 1 2 3 26 26 H 0.97004 * 120.00307 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.47204 * 296.04248 * 13 12 2 28 28 H 1.08994 * 109.47434 * 56.04789 * 13 12 2 29 29 H 1.09000 * 109.47073 * 176.04536 * 13 12 2 30 30 H 1.09000 * 109.46856 * 70.00253 * 14 12 2 31 31 H 1.08998 * 109.47179 * 309.99835 * 14 12 2 32 32 H 1.08003 * 120.00116 * 359.97438 * 16 15 14 33 33 H 1.07997 * 120.00930 * 179.73171 * 19 17 16 34 34 H 1.08002 * 119.99894 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 1.4131 -1.4485 -1.7186 6 6 3.2824 -0.4179 -1.7333 7 7 3.6808 -0.9620 -2.8624 8 14 4.4101 0.7512 -0.8108 9 1 5.1569 0.0003 0.2301 10 1 5.3703 1.3664 -1.7619 11 1 3.5996 1.8161 -0.1673 12 7 2.0197 -0.6925 1.1993 13 6 1.5284 -2.0762 1.2458 14 6 1.6488 0.0391 2.4180 15 6 2.3680 -0.5573 3.6005 16 6 1.7063 -1.4302 4.4433 17 6 2.3684 -1.9812 5.5270 18 9 1.7233 -2.8378 6.3488 19 6 3.6905 -1.6497 5.7717 20 6 4.3496 -0.7734 4.9311 21 6 3.6887 -0.2265 3.8453 22 17 4.5172 0.8750 2.7899 23 1 -0.3633 0.4333 0.9319 24 1 -0.3634 0.5903 -0.8411 25 1 -0.3633 -1.0236 -0.0906 26 1 4.5604 -0.7566 -3.2160 27 1 0.4420 -2.0732 1.3346 28 1 1.8167 -2.5950 0.3317 29 1 1.9618 -2.5869 2.1056 30 1 0.5723 -0.0347 2.5725 31 1 1.9298 1.0869 2.3124 32 1 0.6737 -1.6846 4.2548 33 1 4.2062 -2.0760 6.6194 34 1 5.3808 -0.5150 5.1215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098060049.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:16 Heat of formation + Delta-G solvation = -21.579725 kcal Electronic energy + Delta-G solvation = -19019.015603 eV Core-core repulsion = 15892.335869 eV Total energy + Delta-G solvation = -3126.679733 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.95535 -39.43696 -37.09451 -36.12631 -32.88872 -31.65445 -30.29750 -29.19090 -26.76671 -25.49972 -23.76002 -22.81653 -21.25866 -19.11808 -17.32798 -16.78953 -16.64977 -16.50249 -15.71886 -15.11655 -14.44720 -14.21064 -13.96560 -13.57574 -13.36447 -13.02016 -12.77421 -12.64343 -12.34625 -12.05357 -11.50249 -11.32357 -11.20608 -11.13405 -10.93577 -10.63494 -10.63175 -10.16324 -9.83090 -9.60585 -9.16243 -8.93883 -8.61051 -8.35288 -7.26157 -6.05678 -4.10016 0.99669 1.10240 2.37167 3.41120 3.45234 3.51062 3.59512 4.14232 4.54930 4.58498 4.70405 4.90358 5.04480 5.21340 5.48795 5.62025 5.69497 5.75141 5.98268 6.01598 6.04106 6.13427 6.24101 6.26992 6.34340 6.40390 6.53381 6.70664 6.80987 6.99334 7.15926 7.63770 8.03259 8.22380 8.57118 8.96438 9.59134 11.04877 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021857 B = 0.007386 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.718325 B = 3789.848448 C = 4520.050281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.167 3.833 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.071 0.929 6 C 0.084 3.916 7 N -0.897 5.897 8 Si 0.886 3.114 9 H -0.255 1.255 10 H -0.306 1.306 11 H -0.267 1.267 12 N -0.523 5.523 13 C 0.036 3.964 14 C 0.076 3.924 15 C -0.026 4.026 16 C -0.139 4.139 17 C 0.097 3.903 18 F -0.140 7.140 19 C -0.152 4.152 20 C -0.086 4.086 21 C -0.029 4.029 22 Cl -0.047 7.047 23 H 0.027 0.973 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.263 0.737 27 H 0.012 0.988 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.952 1.313 16.692 16.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.062 3.938 3 H 0.070 0.930 4 C -0.539 4.539 5 H 0.089 0.911 6 C -0.120 4.120 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.180 1.180 10 H -0.234 1.234 11 H -0.192 1.192 12 N -0.247 5.247 13 C -0.112 4.112 14 C -0.051 4.051 15 C -0.028 4.028 16 C -0.159 4.159 17 C 0.078 3.922 18 F -0.119 7.119 19 C -0.171 4.171 20 C -0.105 4.105 21 C -0.057 4.057 22 Cl -0.018 7.018 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.253 1.359 16.446 16.504 hybrid contribution -0.222 0.390 0.535 0.698 sum -0.475 1.750 16.981 17.078 Atomic orbital electron populations 1.22331 1.00201 1.00798 0.99135 1.19992 0.89845 0.95745 0.88195 0.93007 1.20811 1.01863 1.24181 1.07047 0.91108 1.25022 0.97628 0.95451 0.93862 1.69934 1.19923 1.44291 1.19307 0.86698 0.80537 0.81598 0.79670 1.18004 1.23351 1.19246 1.63033 1.59486 1.02020 1.00176 1.22167 0.95904 0.91036 1.02106 1.21203 0.96085 0.98722 0.89118 1.19770 0.92392 0.94963 0.95635 1.20998 1.01344 0.98954 0.94576 1.17666 0.91321 0.92455 0.90780 1.91492 1.81581 1.67900 1.70925 1.20966 0.93317 1.00896 1.01907 1.20879 1.00327 0.96200 0.93087 1.20878 0.93146 0.97776 0.93887 1.98412 1.77619 1.61118 1.64663 0.95366 0.92982 0.93369 0.92692 0.96999 0.89929 0.94010 0.94162 0.89979 0.84284 0.84305 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 8.43 37.16 0.31 -2.92 16 2 C 0.17 3.76 1.71 -68.87 -0.12 3.64 16 3 H 0.05 1.23 5.62 -51.93 -0.29 0.94 16 4 C -0.50 -13.54 7.65 -34.44 -0.26 -13.80 16 5 H 0.07 2.08 8.05 -52.48 -0.42 1.66 16 6 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 7 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 8 Si 0.89 22.16 25.97 -169.99 -4.41 17.75 16 9 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 10 H -0.31 -7.80 7.11 56.52 0.40 -7.40 16 11 H -0.27 -6.40 6.14 56.52 0.35 -6.05 16 12 N -0.52 -10.65 4.28 -237.74 -1.02 -11.67 16 13 C 0.04 0.69 8.53 60.07 0.51 1.21 16 14 C 0.08 1.30 3.95 -4.98 -0.02 1.28 16 15 C -0.03 -0.40 4.57 -104.59 -0.48 -0.88 16 16 C -0.14 -1.90 8.73 -39.52 -0.35 -2.25 16 17 C 0.10 1.26 7.30 -39.42 -0.29 0.97 16 18 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 19 C -0.15 -1.76 10.03 -39.52 -0.40 -2.16 16 20 C -0.09 -1.08 9.83 -39.56 -0.39 -1.47 16 21 C -0.03 -0.45 6.31 -39.49 -0.25 -0.70 16 22 Cl -0.05 -0.81 25.60 -51.86 -1.33 -2.14 16 23 H 0.03 0.48 6.52 -51.93 -0.34 0.14 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.94 6.76 -51.93 -0.35 0.58 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.01 0.21 6.62 -51.93 -0.34 -0.14 16 28 H 0.08 1.81 6.99 -51.93 -0.36 1.45 16 29 H 0.04 0.74 6.66 -51.93 -0.35 0.39 16 30 H 0.04 0.63 6.68 -51.93 -0.35 0.29 16 31 H 0.08 1.43 7.21 -51.93 -0.37 1.05 16 32 H 0.14 1.72 8.03 -52.48 -0.42 1.30 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 291.09 15.07 4.39 4.39 Total: -1.00 -29.18 291.09 -7.47 -36.65 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.09 Total: -2.02 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -1.82 Total: -14.78 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.24 Total: -38.06 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.41 Total: 17.75 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.33 Total: -2.14 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.18 -7.47 -36.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098060049.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.065 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds