Wall clock time and date at job start Mon Mar 30 2020 01:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47168 * 2 1 4 4 C 1.50704 * 109.47140 * 240.00413 * 2 1 3 5 5 H 1.08003 * 119.99739 * 335.00117 * 4 2 1 6 6 C 1.37872 * 119.99925 * 155.00005 * 4 2 1 7 7 N 1.31515 * 119.99799 * 185.13000 * 6 4 2 8 8 Si 1.86798 * 120.00332 * 5.12705 * 6 4 2 9 9 H 1.48498 * 109.46951 * 84.82855 * 8 6 4 10 10 H 1.48498 * 109.47493 * 204.82685 * 8 6 4 11 11 H 1.48494 * 109.47059 * 324.83058 * 8 6 4 12 12 N 1.46893 * 109.47358 * 120.00173 * 2 1 3 13 13 C 1.46905 * 110.99816 * 58.95577 * 12 2 1 14 14 C 1.46895 * 111.00126 * 294.99883 * 12 2 1 15 15 C 1.50705 * 109.47334 * 189.99636 * 14 12 2 16 16 C 1.38211 * 119.99741 * 259.72803 * 15 14 12 17 17 C 1.38432 * 119.98587 * 179.79120 * 16 15 14 18 18 F 1.35101 * 120.01120 * 180.21062 * 17 16 15 19 19 C 1.38480 * 119.97848 * 0.48356 * 17 16 15 20 20 C 1.38161 * 119.98470 * 359.74511 * 19 17 16 21 21 C 1.38332 * 119.98884 * 80.00321 * 15 14 12 22 22 Cl 1.73597 * 119.98914 * 359.97438 * 21 15 14 23 23 H 1.09002 * 109.47019 * 294.93416 * 1 2 3 24 24 H 1.08996 * 109.47328 * 54.93847 * 1 2 3 25 25 H 1.08996 * 109.46990 * 174.94177 * 1 2 3 26 26 H 0.97004 * 120.00307 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.47204 * 296.04248 * 13 12 2 28 28 H 1.08994 * 109.47434 * 56.04789 * 13 12 2 29 29 H 1.09000 * 109.47073 * 176.04536 * 13 12 2 30 30 H 1.09000 * 109.46856 * 70.00253 * 14 12 2 31 31 H 1.08998 * 109.47179 * 309.99835 * 14 12 2 32 32 H 1.08003 * 120.00116 * 359.97438 * 16 15 14 33 33 H 1.07997 * 120.00930 * 179.73171 * 19 17 16 34 34 H 1.08002 * 119.99894 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 1.4131 -1.4485 -1.7186 6 6 3.2824 -0.4179 -1.7333 7 7 3.6808 -0.9620 -2.8624 8 14 4.4101 0.7512 -0.8108 9 1 5.1569 0.0003 0.2301 10 1 5.3703 1.3664 -1.7619 11 1 3.5996 1.8161 -0.1673 12 7 2.0197 -0.6925 1.1993 13 6 1.5284 -2.0762 1.2458 14 6 1.6488 0.0391 2.4180 15 6 2.3680 -0.5573 3.6005 16 6 1.7063 -1.4302 4.4433 17 6 2.3684 -1.9812 5.5270 18 9 1.7233 -2.8378 6.3488 19 6 3.6905 -1.6497 5.7717 20 6 4.3496 -0.7734 4.9311 21 6 3.6887 -0.2265 3.8453 22 17 4.5172 0.8750 2.7899 23 1 -0.3633 0.4333 0.9319 24 1 -0.3634 0.5903 -0.8411 25 1 -0.3633 -1.0236 -0.0906 26 1 4.5604 -0.7566 -3.2160 27 1 0.4420 -2.0732 1.3346 28 1 1.8167 -2.5950 0.3317 29 1 1.9618 -2.5869 2.1056 30 1 0.5723 -0.0347 2.5725 31 1 1.9298 1.0869 2.3124 32 1 0.6737 -1.6846 4.2548 33 1 4.2062 -2.0760 6.6194 34 1 5.3808 -0.5150 5.1215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098060049.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:16 Heat of formation + Delta-G solvation = -39.185409 kcal Electronic energy + Delta-G solvation = -19019.779042 eV Core-core repulsion = 15892.335869 eV Total energy + Delta-G solvation = -3127.443173 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.94635 -40.57963 -38.62757 -37.31643 -34.71798 -33.18704 -31.37854 -30.73461 -28.16066 -27.38417 -25.25635 -23.84788 -22.52309 -20.83937 -18.97451 -18.24625 -17.71075 -17.57016 -16.89403 -16.54676 -16.21468 -15.49023 -15.37065 -14.96282 -14.77395 -14.45241 -14.25803 -14.03381 -13.75266 -13.39449 -13.13421 -12.80984 -12.73787 -12.51485 -12.35806 -12.21077 -12.06551 -11.78149 -11.56974 -11.48310 -10.99478 -10.71217 -10.08190 -9.51244 -8.82400 -8.24389 -6.30700 -0.05355 0.09361 1.19993 1.41691 1.51152 1.59322 2.37187 2.46437 3.00797 3.15702 3.57538 3.67161 3.76508 4.04880 4.19377 4.42317 4.43702 4.48986 4.65552 4.70250 4.74864 4.78058 4.82770 4.92407 5.01443 5.02202 5.16462 5.30179 5.37028 5.44573 5.67738 5.71233 6.15537 6.51995 6.64541 6.84429 7.41333 8.89771 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021857 B = 0.007386 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.718325 B = 3789.848448 C = 4520.050281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.171 3.829 3 H 0.044 0.956 4 C -0.493 4.493 5 H 0.033 0.967 6 C 0.030 3.970 7 N -0.948 5.948 8 Si 0.941 3.059 9 H -0.248 1.248 10 H -0.315 1.315 11 H -0.251 1.251 12 N -0.538 5.538 13 C 0.046 3.954 14 C 0.081 3.919 15 C -0.044 4.044 16 C -0.138 4.138 17 C 0.094 3.906 18 F -0.139 7.139 19 C -0.137 4.137 20 C -0.082 4.082 21 C -0.045 4.045 22 Cl -0.072 7.072 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.262 0.738 27 H 0.028 0.972 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.171 0.829 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 1.579 19.957 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.066 3.934 3 H 0.062 0.938 4 C -0.532 4.532 5 H 0.051 0.949 6 C -0.169 4.169 7 N -0.588 5.588 8 Si 0.768 3.232 9 H -0.172 1.172 10 H -0.243 1.243 11 H -0.175 1.175 12 N -0.262 5.262 13 C -0.102 4.102 14 C -0.046 4.046 15 C -0.045 4.045 16 C -0.157 4.157 17 C 0.074 3.926 18 F -0.118 7.118 19 C -0.156 4.156 20 C -0.101 4.101 21 C -0.072 4.072 22 Cl -0.043 7.043 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.169 0.831 33 H 0.189 0.811 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.478 1.625 19.744 19.816 hybrid contribution -0.247 0.217 -0.356 0.485 sum -0.725 1.842 19.388 19.488 Atomic orbital electron populations 1.22214 0.97901 1.00923 1.00727 1.19768 0.91644 0.94572 0.87443 0.93785 1.21044 1.00933 1.22704 1.08515 0.94873 1.25756 0.99288 0.97304 0.94535 1.70069 1.20489 1.46895 1.21377 0.85832 0.78783 0.80239 0.78360 1.17244 1.24321 1.17500 1.62613 1.60203 1.02502 1.00895 1.22038 0.96978 0.90261 1.00916 1.21140 0.97379 0.98069 0.87997 1.19607 0.92667 0.96375 0.95849 1.21073 1.01913 0.98284 0.94436 1.17781 0.91845 0.92357 0.90581 1.91503 1.81664 1.67838 1.70803 1.21313 0.92721 0.99459 1.02058 1.21144 1.01353 0.95566 0.92019 1.21084 0.93316 0.98198 0.94597 1.98397 1.78050 1.62077 1.65761 0.92211 0.93284 0.93648 0.92915 0.95329 0.93526 0.92342 0.92370 0.90440 0.83117 0.81128 0.81970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.94 8.43 71.98 0.61 -5.33 16 2 C 0.17 7.60 1.71 44.17 0.08 7.67 16 3 H 0.04 2.03 5.62 -2.39 -0.01 2.02 16 4 C -0.49 -27.30 7.65 25.60 0.20 -27.11 16 5 H 0.03 2.04 8.05 -2.91 -0.02 2.01 16 6 C 0.03 1.73 5.47 84.65 0.46 2.20 16 7 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 8 Si 0.94 46.36 25.97 68.60 1.78 48.14 16 9 H -0.25 -11.81 6.54 99.48 0.65 -11.16 16 10 H -0.31 -15.84 7.11 99.48 0.71 -15.14 16 11 H -0.25 -11.52 6.14 99.48 0.61 -10.91 16 12 N -0.54 -21.12 4.28 -906.06 -3.88 -24.99 16 13 C 0.05 1.72 8.53 127.69 1.09 2.81 16 14 C 0.08 2.57 3.95 85.56 0.34 2.90 16 15 C -0.04 -1.22 4.57 -19.85 -0.09 -1.31 16 16 C -0.14 -3.30 8.73 22.31 0.19 -3.10 16 17 C 0.09 2.07 7.30 22.37 0.16 2.23 16 18 F -0.14 -3.10 17.27 44.97 0.78 -2.33 16 19 C -0.14 -2.58 10.03 22.31 0.22 -2.36 16 20 C -0.08 -1.76 9.83 22.29 0.22 -1.55 16 21 C -0.04 -1.25 6.31 22.33 0.14 -1.11 16 22 Cl -0.07 -2.33 25.60 -2.72 -0.07 -2.40 16 23 H 0.06 1.85 6.52 -2.39 -0.02 1.84 16 24 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.04 1.70 6.76 -2.39 -0.02 1.69 16 26 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 27 H 0.03 0.95 6.62 -2.39 -0.02 0.94 16 28 H 0.05 2.06 6.99 -2.39 -0.02 2.04 16 29 H 0.06 1.96 6.66 -2.39 -0.02 1.95 16 30 H 0.06 1.62 6.68 -2.39 -0.02 1.60 16 31 H 0.08 2.52 7.21 -2.39 -0.02 2.50 16 32 H 0.15 3.19 8.03 -2.91 -0.02 3.16 16 33 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -64.32 291.09 3.49 -60.83 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 0.96 Total: 4.03 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 3.62 Total: -24.05 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -3.58 Total: -84.22 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.78 Total: 48.14 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.07 Total: -2.40 kcal Total: -64.32 3.49 -60.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098060049.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.645 kcal (2) G-P(sol) polarization free energy of solvation -64.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds