Wall clock time and date at job start Mon Mar 30 2020 00:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00084 * 2 1 4 4 C 1.52995 * 109.47225 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47238 * 65.00266 * 4 3 2 6 6 C 1.46502 * 119.99942 * 270.00024 * 5 4 3 7 7 C 1.50701 * 109.47265 * 263.27833 * 6 5 4 8 8 H 1.07997 * 119.99562 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99922 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00321 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99777 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47422 * 89.99645 * 11 9 7 13 13 H 1.48500 * 109.47067 * 210.00186 * 11 9 7 14 14 H 1.48502 * 109.47268 * 329.99582 * 11 9 7 15 15 C 1.34774 * 119.99923 * 89.99773 * 5 4 3 16 16 O 1.21606 * 120.00295 * 3.55440 * 15 5 4 17 17 C 1.47454 * 119.99929 * 183.55546 * 15 5 4 18 18 C 1.37984 * 124.15499 * 173.56313 * 17 15 5 19 19 S 1.72100 * 104.03319 * 180.02562 * 18 17 15 20 20 N 1.56407 * 96.15592 * 0.02562 * 19 18 17 21 21 N 1.27421 * 109.87501 * 0.02562 * 20 19 18 22 22 H 1.08991 * 109.46986 * 299.99784 * 1 2 3 23 23 H 1.09006 * 109.46531 * 60.00002 * 1 2 3 24 24 H 1.08999 * 109.47070 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46859 * 60.00018 * 3 2 1 26 26 H 1.08996 * 109.47277 * 300.00132 * 3 2 1 27 27 H 1.09003 * 109.47696 * 305.00307 * 4 3 2 28 28 H 1.08998 * 109.47324 * 185.00177 * 4 3 2 29 29 H 1.09003 * 109.47055 * 23.28362 * 6 5 4 30 30 H 1.09008 * 109.46841 * 143.27880 * 6 5 4 31 31 H 0.97002 * 120.00517 * 179.97438 * 10 9 7 32 32 H 1.08002 * 127.98358 * 0.26452 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3403 7 6 5.5418 -1.2847 -1.1023 8 1 6.2833 -0.5250 -0.9039 9 6 5.9084 -2.6133 -1.1380 10 7 5.0056 -3.5384 -1.3802 11 14 7.6877 -3.0994 -0.8423 12 1 7.9018 -3.3361 0.6080 13 1 7.9935 -4.3413 -1.5970 14 1 8.5824 -2.0074 -1.3030 15 6 4.2634 1.3330 -2.3199 16 8 4.2183 2.5447 -2.2271 17 6 4.6316 0.7051 -3.6023 18 6 4.8169 1.3998 -4.7800 19 16 5.2240 0.1804 -5.9242 20 7 5.1398 -1.0209 -4.9261 21 7 4.8238 -0.5990 -3.7660 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8463 0.8900 26 1 1.6887 1.8464 -0.8899 27 1 3.8509 0.5685 0.8427 28 1 3.9785 2.1765 0.0902 29 1 3.4721 -1.3606 -0.5875 30 1 3.7986 -1.2244 -2.3320 31 1 5.2636 -4.4731 -1.4056 32 1 4.7306 2.4637 -4.9448 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112677042.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:42 Heat of formation + Delta-G solvation = 11.883696 kcal Electronic energy + Delta-G solvation = -19209.577365 eV Core-core repulsion = 16106.312383 eV Total energy + Delta-G solvation = -3103.264982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.49861 -38.72999 -37.36046 -34.97516 -32.46534 -31.62316 -29.81652 -26.95700 -26.54365 -25.87791 -23.72871 -22.72280 -21.40669 -19.75914 -17.84443 -16.51275 -16.22105 -16.09197 -15.50577 -15.36079 -15.08159 -14.86227 -14.45494 -14.25636 -13.66362 -13.13228 -12.31349 -12.16654 -11.94249 -11.82309 -11.63456 -11.46462 -11.22017 -10.85181 -10.82085 -10.54901 -10.04219 -9.64621 -9.54922 -9.49244 -9.33708 -9.32465 -9.13177 -8.23676 -7.70690 -5.92062 -3.93240 0.56654 1.42595 2.13599 2.19530 3.35488 3.42077 3.44640 3.75990 3.81729 4.14678 4.49402 4.60124 5.22356 5.28090 5.36506 5.44736 5.48069 5.60044 5.62697 5.66562 5.76429 5.86703 6.05430 6.31440 6.85130 7.46499 7.62189 7.70897 7.98341 8.21497 8.32650 8.34204 8.79714 9.07960 9.67823 11.16218 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.009828 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.850513 B = 2848.445351 C = 4384.512463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.566 5.566 6 C 0.230 3.770 7 C -0.516 4.516 8 H 0.051 0.949 9 C 0.074 3.926 10 N -0.882 5.882 11 Si 0.887 3.113 12 H -0.282 1.282 13 H -0.286 1.286 14 H -0.278 1.278 15 C 0.596 3.404 16 O -0.569 6.569 17 C -0.011 4.011 18 C -0.246 4.246 19 S 0.376 5.624 20 N -0.285 5.285 21 N -0.129 5.129 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.261 0.739 32 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.272 8.914 -4.328 11.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.293 5.293 6 C 0.111 3.889 7 C -0.555 4.555 8 H 0.069 0.931 9 C -0.129 4.129 10 N -0.520 5.520 11 Si 0.715 3.285 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.379 3.621 16 O -0.451 6.451 17 C -0.158 4.158 18 C -0.404 4.404 19 S 0.514 5.486 20 N -0.265 5.265 21 N 0.000 5.000 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.812 7.469 -5.200 10.295 hybrid contribution 0.515 0.983 1.165 1.609 sum -4.297 8.452 -4.035 10.304 Atomic orbital electron populations 1.22686 0.82082 1.02490 0.99136 1.88076 1.18731 1.27270 1.95196 1.23013 0.95018 0.85092 0.99893 1.21461 0.91287 0.99886 0.87809 1.48184 1.60992 1.10906 1.09250 1.20025 0.97297 0.71164 1.00422 1.21262 0.93694 0.92097 1.48480 0.93085 1.24744 0.96745 0.96332 0.95086 1.69917 1.32997 1.00563 1.48525 0.86693 0.85806 0.78014 0.77993 1.20798 1.21184 1.20293 1.16766 0.77723 0.85464 0.82117 1.90704 1.56717 1.13271 1.84359 1.22811 1.06638 0.89308 0.97076 1.28668 1.06818 1.08110 0.96754 1.81267 1.50766 0.94188 1.22422 1.79214 1.21682 1.24195 1.01407 1.72372 1.08019 1.11081 1.08492 0.94665 0.94683 0.89790 0.92917 0.93407 0.88983 0.89083 0.93628 0.91323 0.92967 0.78469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.70 9.66 -35.23 -0.34 -7.04 16 3 C 0.05 0.76 6.28 37.15 0.23 1.00 16 4 C 0.12 2.18 5.81 -4.04 -0.02 2.16 16 5 N -0.57 -12.47 2.44 -176.32 -0.43 -12.90 16 6 C 0.23 5.87 4.52 -5.19 -0.02 5.84 16 7 C -0.52 -14.20 8.24 -34.44 -0.28 -14.49 16 8 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 9 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 10 N -0.88 -25.76 13.29 55.43 0.74 -25.02 16 11 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 15 C 0.60 12.97 7.60 -12.51 -0.10 12.88 16 16 O -0.57 -12.43 16.36 5.27 0.09 -12.34 16 17 C -0.01 -0.24 6.62 -83.77 -0.55 -0.79 16 18 C -0.25 -3.89 11.22 30.64 0.34 -3.55 16 19 S 0.38 5.42 23.38 -107.50 -2.51 2.90 16 20 N -0.29 -5.84 12.49 60.35 0.75 -5.09 16 21 N -0.13 -2.95 7.11 32.74 0.23 -2.72 16 22 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 1.69 8.07 -51.93 -0.42 1.27 16 28 H 0.09 1.55 7.37 -51.93 -0.38 1.17 16 29 H 0.05 1.24 7.26 -51.93 -0.38 0.86 16 30 H 0.07 1.88 5.31 -51.92 -0.28 1.60 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.20 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 295.24 15.07 4.45 4.45 Total: -1.00 -32.66 295.24 -4.97 -37.63 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -3.54 Total: -3.44 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 0.61 Total: 6.59 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 1.29 Total: -45.73 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.25 Total: -19.38 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 5.42 SS G_CDS: -2.51 Total: 2.90 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.66 -4.97 -37.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112677042.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.519 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds