Wall clock time and date at job start Mon Mar 30 2020 00:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00084 * 2 1 4 4 C 1.52995 * 109.47225 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47238 * 65.00266 * 4 3 2 6 6 C 1.46502 * 119.99942 * 270.00024 * 5 4 3 7 7 C 1.50701 * 109.47265 * 263.27833 * 6 5 4 8 8 H 1.07997 * 119.99562 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99922 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00321 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99777 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47422 * 89.99645 * 11 9 7 13 13 H 1.48500 * 109.47067 * 210.00186 * 11 9 7 14 14 H 1.48502 * 109.47268 * 329.99582 * 11 9 7 15 15 C 1.34774 * 119.99923 * 89.99773 * 5 4 3 16 16 O 1.21606 * 120.00295 * 3.55440 * 15 5 4 17 17 C 1.47454 * 119.99929 * 183.55546 * 15 5 4 18 18 C 1.37984 * 124.15499 * 173.56313 * 17 15 5 19 19 S 1.72100 * 104.03319 * 180.02562 * 18 17 15 20 20 N 1.56407 * 96.15592 * 0.02562 * 19 18 17 21 21 N 1.27421 * 109.87501 * 0.02562 * 20 19 18 22 22 H 1.08991 * 109.46986 * 299.99784 * 1 2 3 23 23 H 1.09006 * 109.46531 * 60.00002 * 1 2 3 24 24 H 1.08999 * 109.47070 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46859 * 60.00018 * 3 2 1 26 26 H 1.08996 * 109.47277 * 300.00132 * 3 2 1 27 27 H 1.09003 * 109.47696 * 305.00307 * 4 3 2 28 28 H 1.08998 * 109.47324 * 185.00177 * 4 3 2 29 29 H 1.09003 * 109.47055 * 23.28362 * 6 5 4 30 30 H 1.09008 * 109.46841 * 143.27880 * 6 5 4 31 31 H 0.97002 * 120.00517 * 179.97438 * 10 9 7 32 32 H 1.08002 * 127.98358 * 0.26452 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3403 7 6 5.5418 -1.2847 -1.1023 8 1 6.2833 -0.5250 -0.9039 9 6 5.9084 -2.6133 -1.1380 10 7 5.0056 -3.5384 -1.3802 11 14 7.6877 -3.0994 -0.8423 12 1 7.9018 -3.3361 0.6080 13 1 7.9935 -4.3413 -1.5970 14 1 8.5824 -2.0074 -1.3030 15 6 4.2634 1.3330 -2.3199 16 8 4.2183 2.5447 -2.2271 17 6 4.6316 0.7051 -3.6023 18 6 4.8169 1.3998 -4.7800 19 16 5.2240 0.1804 -5.9242 20 7 5.1398 -1.0209 -4.9261 21 7 4.8238 -0.5990 -3.7660 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8463 0.8900 26 1 1.6887 1.8464 -0.8899 27 1 3.8509 0.5685 0.8427 28 1 3.9785 2.1765 0.0902 29 1 3.4721 -1.3606 -0.5875 30 1 3.7986 -1.2244 -2.3320 31 1 5.2636 -4.4731 -1.4056 32 1 4.7306 2.4637 -4.9448 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112677042.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:42 Heat of formation + Delta-G solvation = -11.680711 kcal Electronic energy + Delta-G solvation = -19210.599194 eV Core-core repulsion = 16106.312383 eV Total energy + Delta-G solvation = -3104.286812 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.00588 -40.29608 -38.68844 -36.68458 -34.48754 -33.08516 -31.29881 -28.83843 -27.95474 -27.11436 -25.34264 -24.55810 -22.86307 -21.20947 -19.42395 -18.50901 -17.66240 -17.53899 -16.95759 -16.82338 -16.63929 -16.30931 -16.05122 -15.82462 -15.15045 -14.66702 -14.23031 -13.75835 -13.45987 -13.29475 -12.96017 -12.90709 -12.75659 -12.74015 -12.53641 -12.12158 -11.90441 -11.63274 -11.16420 -10.96133 -10.73308 -10.67586 -10.58458 -10.26950 -9.46689 -8.04777 -6.12409 -0.76172 0.15753 0.62920 0.79052 1.38413 1.39623 1.47916 2.17289 2.25098 2.48182 2.94999 3.07645 3.28890 3.78531 3.92684 4.14037 4.22891 4.38026 4.44090 4.52997 4.56583 4.63173 4.85177 4.88883 5.10342 5.52282 5.81551 5.89521 6.24396 6.29058 6.49379 6.75503 6.97541 7.18298 7.52595 9.02937 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.009828 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.850513 B = 2848.445351 C = 4384.512463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.055 3.945 4 C 0.111 3.889 5 N -0.574 5.574 6 C 0.254 3.746 7 C -0.517 4.517 8 H 0.038 0.962 9 C 0.030 3.970 10 N -0.913 5.913 11 Si 0.942 3.058 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.279 1.279 15 C 0.592 3.408 16 O -0.575 6.575 17 C -0.052 4.052 18 C -0.232 4.232 19 S 0.511 5.489 20 N -0.347 5.347 21 N -0.180 5.180 22 H 0.061 0.939 23 H 0.042 0.958 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.019 0.981 30 H 0.054 0.946 31 H 0.261 0.739 32 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 10.431 -5.446 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.022 4.022 4 C -0.011 4.011 5 N -0.302 5.302 6 C 0.133 3.867 7 C -0.556 4.556 8 H 0.057 0.943 9 C -0.170 4.170 10 N -0.553 5.553 11 Si 0.768 3.232 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.204 1.204 15 C 0.377 3.623 16 O -0.457 6.457 17 C -0.200 4.200 18 C -0.390 4.390 19 S 0.647 5.353 20 N -0.326 5.326 21 N -0.048 5.048 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.121 0.879 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.525 8.991 -6.283 11.866 hybrid contribution 0.408 0.648 1.289 1.499 sum -4.117 9.639 -4.994 11.610 Atomic orbital electron populations 1.22871 0.79927 1.03286 1.00725 1.88025 1.21253 1.28433 1.95506 1.22956 0.93151 0.84790 1.01326 1.21688 0.93322 0.99910 0.86194 1.48143 1.61568 1.09718 1.10766 1.19470 0.95546 0.73120 0.98558 1.21362 0.94396 0.91889 1.47929 0.94328 1.25391 1.00127 0.96401 0.95063 1.70025 1.34634 1.00704 1.49895 0.85824 0.81591 0.77465 0.78287 1.19733 1.20924 1.20429 1.16976 0.77311 0.85487 0.82546 1.90674 1.57238 1.13137 1.84693 1.22825 1.09439 0.89679 0.98057 1.29178 1.03879 1.10142 0.95772 1.80679 1.46164 0.90348 1.18063 1.78690 1.23682 1.28043 1.02234 1.72411 1.09717 1.12523 1.10186 0.92080 0.93959 0.89531 0.89309 0.93839 0.89753 0.87869 0.96268 0.92825 0.93033 0.75115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -14.85 9.66 -148.98 -1.44 -16.29 16 3 C 0.06 1.73 6.28 71.98 0.45 2.18 16 4 C 0.11 4.11 5.81 86.38 0.50 4.61 16 5 N -0.57 -25.86 2.44 -830.00 -2.02 -27.89 16 6 C 0.25 13.44 4.52 85.63 0.39 13.83 16 7 C -0.52 -29.24 8.24 25.60 0.21 -29.03 16 8 H 0.04 2.23 7.81 -2.91 -0.02 2.20 16 9 C 0.03 1.73 5.46 84.65 0.46 2.19 16 10 N -0.91 -54.76 13.29 21.45 0.28 -54.47 16 11 Si 0.94 45.68 29.54 68.60 2.03 47.71 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 14 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 15 C 0.59 25.83 7.60 86.67 0.66 26.48 16 16 O -0.58 -24.61 16.36 -4.05 -0.07 -24.68 16 17 C -0.05 -2.13 6.62 41.36 0.27 -1.86 16 18 C -0.23 -6.73 11.22 67.76 0.76 -5.97 16 19 S 0.51 13.18 23.38 -56.49 -1.32 11.86 16 20 N -0.35 -13.99 12.49 37.02 0.46 -13.53 16 21 N -0.18 -8.32 7.11 -50.34 -0.36 -8.67 16 22 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 23 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 3.18 8.07 -2.39 -0.02 3.16 16 28 H 0.10 3.48 7.37 -2.39 -0.02 3.47 16 29 H 0.02 1.10 7.26 -2.39 -0.02 1.09 16 30 H 0.05 3.07 5.31 -2.38 -0.01 3.06 16 31 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.23 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -72.92 295.24 3.66 -69.26 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: 1.14 Total: 2.27 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 4.95 Total: 14.42 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -1.64 Total: -104.56 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.51 Total: -40.97 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 13.18 SS G_CDS: -1.32 Total: 11.86 kcal Total: -72.92 3.66 -69.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112677042.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.584 kcal (2) G-P(sol) polarization free energy of solvation -72.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds