Wall clock time and date at job start Mon Mar 30 2020 01:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46807 * 2 1 4 4 C 1.36943 * 119.99483 * 264.07789 * 3 2 1 5 5 H 1.07998 * 119.99511 * 189.98430 * 4 3 2 6 6 C 1.38805 * 120.00370 * 9.98180 * 4 3 2 7 7 N 1.31624 * 119.99839 * 24.33018 * 6 4 3 8 8 Si 1.86805 * 120.00153 * 204.33400 * 6 4 3 9 9 H 1.48502 * 109.46833 * 85.15012 * 8 6 4 10 10 H 1.48501 * 109.46786 * 205.14984 * 8 6 4 11 11 H 1.48495 * 109.46704 * 325.14805 * 8 6 4 12 12 C 1.46493 * 120.00286 * 84.08124 * 3 2 1 13 13 C 1.53001 * 109.47083 * 269.99697 * 12 3 2 14 14 C 1.50704 * 109.47184 * 180.02562 * 13 12 3 15 15 C 1.38449 * 120.02116 * 90.00087 * 14 13 12 16 16 F 1.35102 * 120.01899 * 359.97438 * 15 14 13 17 17 C 1.38448 * 119.96246 * 179.97438 * 15 14 13 18 18 C 1.38220 * 120.00290 * 0.02562 * 17 15 14 19 19 C 1.38205 * 120.03394 * 359.97438 * 18 17 15 20 20 C 1.38291 * 120.01483 * 269.72460 * 14 13 12 21 21 Cl 1.73596 * 120.00524 * 0.02562 * 20 14 13 22 22 H 1.09000 * 109.47091 * 300.00463 * 1 2 3 23 23 H 1.09000 * 109.46510 * 60.00403 * 1 2 3 24 24 H 1.09001 * 109.46723 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47091 * 239.99537 * 2 1 3 26 26 H 1.09000 * 109.47015 * 119.99443 * 2 1 3 27 27 H 0.96994 * 119.99721 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47346 * 29.99760 * 12 3 2 29 29 H 1.09000 * 109.47556 * 149.99904 * 12 3 2 30 30 H 1.09001 * 109.47081 * 300.00225 * 13 12 3 31 31 H 1.08997 * 109.47097 * 60.00122 * 13 12 3 32 32 H 1.08007 * 119.99866 * 179.97438 * 17 15 14 33 33 H 1.07993 * 119.98252 * 180.02562 * 18 17 15 34 34 H 1.08002 * 119.97513 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3619 1.9859 -1.1797 5 1 2.8705 2.9386 -1.1700 6 6 2.0565 1.3745 -2.3878 7 7 1.0646 0.5119 -2.4566 8 14 3.0532 1.7756 -3.9160 9 1 4.2654 0.9187 -3.9553 10 1 2.2288 1.5228 -5.1250 11 1 3.4575 3.2040 -3.8823 12 6 2.1391 2.1155 1.2619 13 6 0.8284 2.8494 1.5524 14 6 0.9529 3.6052 2.8502 15 6 1.4142 4.9106 2.8500 16 9 1.7535 5.5074 1.6865 17 6 1.5276 5.6041 4.0430 18 6 1.1808 4.9930 5.2333 19 6 0.7203 3.6899 5.2334 20 6 0.6010 2.9972 4.0414 21 17 0.0163 1.3627 4.0421 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 0.8510 0.0850 -3.3009 28 1 2.3508 1.4159 2.0705 29 1 2.9511 2.8386 1.1852 30 1 0.6168 3.5489 0.7437 31 1 0.0165 2.1263 1.6291 32 1 1.8877 6.6223 4.0436 33 1 1.2690 5.5344 6.1636 34 1 0.4500 3.2132 6.1641 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121074242.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:42 Heat of formation + Delta-G solvation = -5.775723 kcal Electronic energy + Delta-G solvation = -18831.405043 eV Core-core repulsion = 15705.410623 eV Total energy + Delta-G solvation = -3125.994420 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.70268 -39.19150 -36.33406 -36.23935 -33.18636 -30.99102 -30.36943 -29.41052 -27.49771 -24.31711 -22.77743 -22.61503 -20.89198 -20.07156 -17.59217 -16.86912 -16.47684 -15.73070 -15.48022 -14.87697 -14.64083 -13.85766 -13.74885 -13.45607 -13.18970 -13.01190 -12.48451 -12.27663 -11.84360 -11.67299 -11.51124 -11.30008 -11.18231 -10.87367 -10.77566 -10.58469 -10.42526 -10.27097 -9.76440 -9.52476 -9.27128 -8.71967 -8.64905 -8.29348 -6.83193 -5.72503 -3.03146 1.02169 1.13335 2.19627 3.42454 3.46474 3.50260 3.51226 4.34222 4.53121 4.72198 4.86959 4.92325 5.21140 5.38628 5.46361 5.71054 5.78668 5.94681 6.12112 6.15571 6.19928 6.24084 6.43976 6.65991 6.77141 6.80995 6.93564 7.00285 7.18576 7.24775 7.71924 7.81988 8.17441 8.40743 9.28919 9.90931 10.36435 11.30842 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023160 B = 0.006111 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.686940 B = 4580.806375 C = 5582.081376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.169 3.831 3 N -0.591 5.591 4 C -0.247 4.247 5 H 0.074 0.926 6 C -0.003 4.003 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.289 1.289 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.164 3.836 13 C -0.116 4.116 14 C -0.090 4.090 15 C 0.108 3.892 16 F -0.128 7.128 17 C -0.150 4.150 18 C -0.099 4.099 19 C -0.121 4.121 20 C -0.016 4.016 21 Cl -0.054 7.054 22 H 0.015 0.985 23 H 0.092 0.908 24 H 0.017 0.983 25 H 0.084 0.916 26 H 0.002 0.998 27 H 0.251 0.749 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 6.037 15.421 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 N -0.311 5.311 4 C -0.376 4.376 5 H 0.092 0.908 6 C -0.200 4.200 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.207 1.207 12 C 0.036 3.964 13 C -0.156 4.156 14 C -0.093 4.093 15 C 0.088 3.912 16 F -0.106 7.106 17 C -0.169 4.169 18 C -0.117 4.117 19 C -0.140 4.140 20 C -0.043 4.043 21 Cl -0.024 7.024 22 H 0.034 0.966 23 H 0.111 0.889 24 H 0.036 0.964 25 H 0.102 0.898 26 H 0.021 0.979 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.351 5.787 15.176 16.298 hybrid contribution 0.298 0.262 -0.998 1.074 sum -1.053 6.048 14.177 15.449 Atomic orbital electron populations 1.22437 0.99230 0.98147 1.01332 1.20758 0.92582 0.84337 0.97970 1.44316 1.75111 1.10041 1.01645 1.19325 1.30125 1.04663 0.83520 0.90839 1.24735 0.97771 1.00183 0.97317 1.70152 1.26397 1.32758 1.24826 0.86361 0.80210 0.77888 0.82803 1.21628 1.21978 1.20732 1.20723 0.93037 0.93860 0.88789 1.21749 1.03532 0.99534 0.90775 1.20201 0.98828 0.93129 0.97138 1.17392 1.00862 0.91037 0.81887 1.91542 1.89619 1.83051 1.46396 1.21197 1.03236 1.01134 0.91361 1.20799 0.99033 0.94243 0.97654 1.21047 1.01295 0.94844 0.96836 1.20590 1.02208 0.87608 0.93870 1.98385 1.86675 1.18700 1.98676 0.96571 0.88949 0.96412 0.89780 0.97928 0.93830 0.94128 0.93869 0.90367 0.89658 0.84582 0.84594 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.57 37.16 0.36 -3.21 16 2 C 0.17 4.13 5.64 -4.04 -0.02 4.11 16 3 N -0.59 -14.82 2.54 -173.24 -0.44 -15.26 16 4 C -0.25 -6.76 9.70 -15.06 -0.15 -6.91 16 5 H 0.07 2.00 7.92 -52.49 -0.42 1.59 16 6 C 0.00 -0.08 4.89 -17.43 -0.09 -0.16 16 7 N -0.90 -25.15 8.53 55.49 0.47 -24.68 16 8 Si 0.90 21.82 29.62 -169.99 -5.03 16.79 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.16 3.49 5.69 -4.05 -0.02 3.47 16 13 C -0.12 -2.26 4.98 -27.88 -0.14 -2.40 16 14 C -0.09 -1.47 5.14 -104.52 -0.54 -2.01 16 15 C 0.11 1.65 7.24 -39.43 -0.29 1.37 16 16 F -0.13 -2.19 16.48 2.25 0.04 -2.15 16 17 C -0.15 -1.77 10.03 -39.51 -0.40 -2.16 16 18 C -0.10 -0.99 10.04 -39.60 -0.40 -1.39 16 19 C -0.12 -1.37 9.83 -39.54 -0.39 -1.76 16 20 C -0.02 -0.22 6.31 -39.51 -0.25 -0.47 16 21 Cl -0.05 -0.78 27.29 -51.86 -1.42 -2.19 16 22 H 0.02 0.34 5.97 -51.93 -0.31 0.03 16 23 H 0.09 2.46 6.19 -51.93 -0.32 2.13 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 2.28 5.95 -51.93 -0.31 1.97 16 26 H 0.00 0.06 7.98 -51.93 -0.41 -0.36 16 27 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.04 0.82 7.95 -51.93 -0.41 0.40 16 29 H 0.04 0.93 8.03 -51.93 -0.42 0.51 16 30 H 0.08 1.69 7.64 -51.93 -0.40 1.29 16 31 H 0.09 1.71 4.67 -51.93 -0.24 1.47 16 32 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 297.76 15.07 4.49 4.49 Total: -1.00 -28.44 297.76 -8.27 -36.71 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.07 Total: -2.17 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -2.32 Total: -11.53 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.03 Total: -39.93 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.42 Total: -2.19 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.44 -8.27 -36.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121074242.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.936 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds