Wall clock time and date at job start Mon Mar 30 2020 01:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46807 * 2 1 4 4 C 1.36943 * 119.99483 * 264.07789 * 3 2 1 5 5 H 1.07998 * 119.99511 * 189.98430 * 4 3 2 6 6 C 1.38805 * 120.00370 * 9.98180 * 4 3 2 7 7 N 1.31624 * 119.99839 * 24.33018 * 6 4 3 8 8 Si 1.86805 * 120.00153 * 204.33400 * 6 4 3 9 9 H 1.48502 * 109.46833 * 85.15012 * 8 6 4 10 10 H 1.48501 * 109.46786 * 205.14984 * 8 6 4 11 11 H 1.48495 * 109.46704 * 325.14805 * 8 6 4 12 12 C 1.46493 * 120.00286 * 84.08124 * 3 2 1 13 13 C 1.53001 * 109.47083 * 269.99697 * 12 3 2 14 14 C 1.50704 * 109.47184 * 180.02562 * 13 12 3 15 15 C 1.38449 * 120.02116 * 90.00087 * 14 13 12 16 16 F 1.35102 * 120.01899 * 359.97438 * 15 14 13 17 17 C 1.38448 * 119.96246 * 179.97438 * 15 14 13 18 18 C 1.38220 * 120.00290 * 0.02562 * 17 15 14 19 19 C 1.38205 * 120.03394 * 359.97438 * 18 17 15 20 20 C 1.38291 * 120.01483 * 269.72460 * 14 13 12 21 21 Cl 1.73596 * 120.00524 * 0.02562 * 20 14 13 22 22 H 1.09000 * 109.47091 * 300.00463 * 1 2 3 23 23 H 1.09000 * 109.46510 * 60.00403 * 1 2 3 24 24 H 1.09001 * 109.46723 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47091 * 239.99537 * 2 1 3 26 26 H 1.09000 * 109.47015 * 119.99443 * 2 1 3 27 27 H 0.96994 * 119.99721 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47346 * 29.99760 * 12 3 2 29 29 H 1.09000 * 109.47556 * 149.99904 * 12 3 2 30 30 H 1.09001 * 109.47081 * 300.00225 * 13 12 3 31 31 H 1.08997 * 109.47097 * 60.00122 * 13 12 3 32 32 H 1.08007 * 119.99866 * 179.97438 * 17 15 14 33 33 H 1.07993 * 119.98252 * 180.02562 * 18 17 15 34 34 H 1.08002 * 119.97513 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3619 1.9859 -1.1797 5 1 2.8705 2.9386 -1.1700 6 6 2.0565 1.3745 -2.3878 7 7 1.0646 0.5119 -2.4566 8 14 3.0532 1.7756 -3.9160 9 1 4.2654 0.9187 -3.9553 10 1 2.2288 1.5228 -5.1250 11 1 3.4575 3.2040 -3.8823 12 6 2.1391 2.1155 1.2619 13 6 0.8284 2.8494 1.5524 14 6 0.9529 3.6052 2.8502 15 6 1.4142 4.9106 2.8500 16 9 1.7535 5.5074 1.6865 17 6 1.5276 5.6041 4.0430 18 6 1.1808 4.9930 5.2333 19 6 0.7203 3.6899 5.2334 20 6 0.6010 2.9972 4.0414 21 17 0.0163 1.3627 4.0421 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 0.8510 0.0850 -3.3009 28 1 2.3508 1.4159 2.0705 29 1 2.9511 2.8386 1.1852 30 1 0.6168 3.5489 0.7437 31 1 0.0165 2.1263 1.6291 32 1 1.8877 6.6223 4.0436 33 1 1.2690 5.5344 6.1636 34 1 0.4500 3.2132 6.1641 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121074242.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:42 Heat of formation + Delta-G solvation = -19.476220 kcal Electronic energy + Delta-G solvation = -18831.999141 eV Core-core repulsion = 15705.410623 eV Total energy + Delta-G solvation = -3126.588518 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.92751 -40.27226 -38.11408 -37.38980 -34.71657 -32.84540 -31.38879 -31.19984 -29.08023 -26.15526 -24.25195 -23.76990 -22.40783 -21.84816 -18.76723 -18.65966 -17.74655 -17.09435 -16.66882 -16.58907 -15.72294 -15.71121 -15.45200 -14.76318 -14.51795 -14.31258 -14.06366 -13.79080 -13.66524 -13.33757 -12.99565 -12.70097 -12.64953 -12.41688 -12.34177 -12.23257 -12.17124 -11.83218 -11.68212 -11.40675 -11.19694 -10.40788 -9.79219 -9.68610 -8.82127 -7.80839 -5.13892 0.02051 0.09937 1.11579 1.47201 1.49869 1.56752 2.46630 2.54114 3.27197 3.29741 3.50122 3.80681 3.88417 3.98777 4.28259 4.33282 4.53728 4.57168 4.72616 4.74577 4.87019 4.98848 5.02868 5.15178 5.17304 5.24196 5.24630 5.32009 5.43882 5.60325 5.78460 5.79678 6.16550 6.35750 7.21609 7.91318 8.32451 9.20632 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023160 B = 0.006111 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.686940 B = 4580.806375 C = 5582.081376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.172 3.828 3 N -0.608 5.608 4 C -0.260 4.260 5 H 0.066 0.934 6 C -0.048 4.048 7 N -0.914 5.914 8 Si 0.956 3.044 9 H -0.288 1.288 10 H -0.295 1.295 11 H -0.278 1.278 12 C 0.168 3.832 13 C -0.096 4.096 14 C -0.118 4.118 15 C 0.082 3.918 16 F -0.148 7.148 17 C -0.141 4.141 18 C -0.075 4.075 19 C -0.112 4.112 20 C -0.024 4.024 21 Cl -0.063 7.063 22 H 0.027 0.973 23 H 0.059 0.941 24 H 0.031 0.969 25 H 0.055 0.945 26 H 0.021 0.979 27 H 0.247 0.753 28 H 0.053 0.947 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.185 0.815 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 7.212 18.309 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.047 3.953 3 N -0.329 5.329 4 C -0.390 4.390 5 H 0.083 0.917 6 C -0.243 4.243 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.215 1.215 10 H -0.222 1.222 11 H -0.203 1.203 12 C 0.041 3.959 13 C -0.136 4.136 14 C -0.120 4.120 15 C 0.062 3.938 16 F -0.127 7.127 17 C -0.160 4.160 18 C -0.093 4.093 19 C -0.131 4.131 20 C -0.051 4.051 21 Cl -0.034 7.034 22 H 0.046 0.954 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.182 0.818 33 H 0.202 0.798 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.068 6.983 18.102 19.431 hybrid contribution 0.204 -0.017 -1.702 1.715 sum -0.863 6.967 16.399 17.839 Atomic orbital electron populations 1.22212 0.98541 0.98673 1.00185 1.20636 0.93092 0.84189 0.97340 1.44426 1.75795 1.10566 1.02140 1.19465 1.30210 1.04569 0.84766 0.91651 1.25366 0.98589 1.00741 0.99606 1.70308 1.27167 1.33695 1.24952 0.85440 0.78651 0.77687 0.79660 1.21483 1.22211 1.20327 1.20710 0.93761 0.93779 0.87601 1.21255 1.01803 0.98613 0.91965 1.19943 1.01916 0.93978 0.96203 1.17790 1.02221 0.91216 0.82569 1.91487 1.90051 1.83307 1.47868 1.21582 1.01920 1.02156 0.90332 1.21391 0.95651 0.93512 0.98698 1.21487 0.99710 0.95206 0.96667 1.20759 1.02635 0.87441 0.94295 1.98381 1.86823 1.19469 1.98682 0.95425 0.92212 0.94958 0.92643 0.96080 0.94354 0.92901 0.94724 0.93719 0.90599 0.81821 0.79773 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.51 9.57 71.98 0.69 -5.82 16 2 C 0.17 8.60 5.64 86.38 0.49 9.09 16 3 N -0.61 -31.29 2.54 -702.00 -1.78 -33.07 16 4 C -0.26 -14.68 9.70 84.03 0.82 -13.87 16 5 H 0.07 3.70 7.92 -2.91 -0.02 3.68 16 6 C -0.05 -2.69 4.89 84.86 0.42 -2.28 16 7 N -0.91 -52.88 8.53 21.65 0.18 -52.69 16 8 Si 0.96 45.94 29.62 68.60 2.03 47.97 16 9 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 10 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 C 0.17 7.32 5.69 86.38 0.49 7.81 16 13 C -0.10 -3.87 4.98 29.85 0.15 -3.73 16 14 C -0.12 -3.80 5.14 -19.80 -0.10 -3.90 16 15 C 0.08 2.42 7.24 22.37 0.16 2.58 16 16 F -0.15 -5.20 16.48 44.97 0.74 -4.46 16 17 C -0.14 -2.81 10.03 22.32 0.22 -2.58 16 18 C -0.07 -1.10 10.04 22.26 0.22 -0.87 16 19 C -0.11 -2.05 9.83 22.30 0.22 -1.83 16 20 C -0.02 -0.65 6.31 22.32 0.14 -0.51 16 21 Cl -0.06 -1.74 27.29 -2.72 -0.07 -1.81 16 22 H 0.03 1.21 5.97 -2.39 -0.01 1.19 16 23 H 0.06 3.26 6.19 -2.39 -0.01 3.25 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 3.08 5.95 -2.39 -0.01 3.07 16 26 H 0.02 0.96 7.98 -2.39 -0.02 0.94 16 27 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 28 H 0.05 2.13 7.95 -2.39 -0.02 2.12 16 29 H 0.03 1.53 8.03 -2.39 -0.02 1.52 16 30 H 0.04 2.04 7.64 -2.39 -0.02 2.03 16 31 H 0.08 3.13 4.67 -2.39 -0.01 3.12 16 32 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -64.09 297.76 6.12 -57.96 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: 1.11 Total: 2.02 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 3.91 Total: -15.91 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -1.60 Total: -85.77 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.74 Total: -4.46 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.07 Total: -1.81 kcal Total: -64.09 6.12 -57.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121074242.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.486 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds