Wall clock time and date at job start Mon Mar 30 2020 00:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00004 * 2 1 4 4 H 1.48499 * 109.47184 * 269.99553 * 3 2 1 5 5 H 1.48504 * 109.46913 * 29.99693 * 3 2 1 6 6 H 1.48498 * 109.47099 * 149.99381 * 3 2 1 7 7 C 1.37874 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00288 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47128 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47312 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.47195 * 180.02562 * 11 10 9 13 13 C 1.46902 * 110.99665 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46691 * 179.97438 * 13 12 11 15 15 C 1.38244 * 119.98398 * 260.02219 * 14 13 12 16 16 C 1.38184 * 120.04273 * 179.97438 * 15 14 13 17 17 C 1.38485 * 119.99814 * 0.02730 * 16 15 14 18 18 F 1.35106 * 120.01935 * 179.97438 * 17 16 15 19 19 C 1.38418 * 119.96155 * 359.69599 * 17 16 15 20 20 C 1.38332 * 119.96484 * 0.55789 * 19 17 16 21 21 Cl 1.73599 * 120.00615 * 179.74436 * 20 19 17 22 22 H 0.97004 * 119.99853 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46696 * 60.00469 * 9 7 2 24 24 H 1.08995 * 109.47429 * 300.00275 * 9 7 2 25 25 H 1.09006 * 109.47424 * 60.00623 * 10 9 7 26 26 H 1.09003 * 109.47682 * 300.00229 * 10 9 7 27 27 H 1.08999 * 109.47045 * 59.99987 * 11 10 9 28 28 H 1.09003 * 109.46585 * 299.99868 * 11 10 9 29 29 H 1.00903 * 110.99988 * 56.04902 * 12 11 10 30 30 H 1.09002 * 109.47024 * 60.00314 * 13 12 11 31 31 H 1.08995 * 109.47576 * 300.00105 * 13 12 11 32 32 H 1.08002 * 119.98045 * 0.02562 * 15 14 13 33 33 H 1.07999 * 120.00077 * 180.02562 * 16 15 14 34 34 H 1.08005 * 120.02197 * 180.32482 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4803 -4.9871 0.0033 12 7 2.4349 -6.1036 0.0049 13 6 1.7346 -7.3950 0.0061 14 6 2.7442 -8.5138 0.0071 15 6 3.0530 -9.1668 -1.1716 16 6 3.9789 -10.1926 -1.1722 17 6 4.5977 -10.5674 0.0086 18 9 5.5027 -11.5706 0.0087 19 6 4.2928 -9.9098 1.1879 20 6 3.3618 -8.8866 1.1876 21 17 2.9737 -8.0656 2.6671 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5574 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 2.8719 -3.6036 0.8928 26 1 2.8720 -3.6051 -0.8873 27 1 0.8540 -5.0454 -0.8869 28 1 0.8534 -5.0442 0.8932 29 1 3.0692 -6.0359 0.7867 30 1 1.1101 -7.4704 -0.8841 31 1 1.1094 -7.4685 0.8958 32 1 2.5708 -8.8746 -2.0928 33 1 4.2199 -10.7020 -2.0935 34 1 4.7787 -10.1978 2.1084 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124253238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:30 Heat of formation + Delta-G solvation = -47.310595 kcal Electronic energy + Delta-G solvation = -17333.908469 eV Core-core repulsion = 14206.112961 eV Total energy + Delta-G solvation = -3127.795508 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.25357 -39.70853 -36.75285 -36.38798 -33.70941 -32.03914 -31.31074 -30.15796 -26.69594 -24.63454 -23.49842 -22.30133 -21.65349 -20.10376 -18.15574 -17.09505 -16.39670 -16.00957 -15.98167 -15.37768 -14.96821 -14.69987 -14.29743 -14.17087 -13.98428 -13.58065 -13.21965 -12.74536 -12.27434 -11.92687 -11.68437 -11.67278 -11.49050 -11.39547 -11.11968 -10.82354 -10.57022 -10.50198 -9.69035 -9.40112 -9.31466 -9.07258 -8.89995 -8.32969 -8.22370 -5.98178 -4.00119 0.63133 0.74010 1.74114 3.06435 3.33601 3.39561 3.43393 3.88217 4.29445 4.35319 4.48264 4.53235 4.69164 4.79700 5.12406 5.31742 5.37735 5.47452 5.54346 5.65804 5.73157 5.80350 5.87698 6.06876 6.31269 6.36768 6.70880 6.73940 7.13987 7.26265 7.54604 7.70105 7.84890 8.02325 8.45673 9.07102 9.63856 11.13290 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033891 B = 0.003019 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.988064 B = 9272.485418 C = 9440.540527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.684 5.684 13 C 0.091 3.909 14 C -0.074 4.074 15 C -0.060 4.060 16 C -0.148 4.148 17 C 0.106 3.894 18 F -0.135 7.135 19 C -0.147 4.147 20 C -0.007 4.007 21 Cl -0.051 7.051 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.014 0.986 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.339 0.661 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -23.056 0.721 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.315 5.315 13 C -0.038 4.038 14 C -0.076 4.076 15 C -0.079 4.079 16 C -0.167 4.167 17 C 0.086 3.914 18 F -0.114 7.114 19 C -0.166 4.166 20 C -0.034 4.034 21 Cl -0.022 7.022 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.157 0.843 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.898 -22.877 0.181 23.626 hybrid contribution 0.292 0.769 1.096 1.371 sum 6.190 -22.108 1.278 22.994 Atomic orbital electron populations 1.69968 1.06060 1.26546 1.51076 1.25029 0.94849 0.99262 0.95395 0.86596 0.79853 0.83466 0.78107 1.20652 1.21271 1.19872 1.21263 0.93076 0.91058 1.50290 0.92661 1.19061 0.93991 0.91332 0.97128 1.21630 0.99220 0.92871 1.00800 1.22165 0.94075 0.90577 1.00123 1.60689 1.20277 1.00500 1.50053 1.20936 0.93338 0.87355 1.02203 1.19879 0.98501 0.97794 0.91412 1.20923 0.95804 0.93456 0.97731 1.21270 0.98465 0.99502 0.97483 1.17452 0.91170 0.88459 0.94272 1.91525 1.64720 1.57884 1.97255 1.20926 0.99915 0.97186 0.98611 1.20584 0.98572 0.96031 0.88263 1.98407 1.93030 1.77664 1.33125 0.93048 0.96544 0.96796 0.93646 0.92487 0.91230 0.95530 0.84262 0.89548 0.93535 0.83674 0.84029 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 11 C 0.06 1.00 5.69 -3.82 -0.02 0.98 16 12 N -0.68 -9.87 6.49 -115.05 -0.75 -10.62 16 13 C 0.09 1.06 5.25 -4.97 -0.03 1.03 16 14 C -0.07 -0.79 5.40 -104.58 -0.56 -1.35 16 15 C -0.06 -0.54 9.66 -39.60 -0.38 -0.92 16 16 C -0.15 -1.25 10.03 -39.51 -0.40 -1.64 16 17 C 0.11 1.01 7.30 -39.42 -0.29 0.72 16 18 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 19 C -0.15 -1.41 9.81 -39.48 -0.39 -1.80 16 20 C -0.01 -0.07 6.31 -39.51 -0.25 -0.32 16 21 Cl -0.05 -0.56 26.76 -51.86 -1.39 -1.95 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.34 4.90 7.93 -39.29 -0.31 4.59 16 30 H 0.09 0.92 8.00 -51.93 -0.42 0.51 16 31 H 0.05 0.55 7.35 -51.93 -0.38 0.17 16 32 H 0.15 1.04 8.04 -52.49 -0.42 0.61 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 LS Contribution 311.40 15.07 4.69 4.69 Total: -1.00 -30.27 311.40 -9.15 -39.42 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.45 Total: -1.74 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -3.01 Total: -18.90 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.01 Total: -37.05 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.39 Total: -1.95 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.27 -9.15 -39.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124253238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.892 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds