Wall clock time and date at job start Mon Mar 30 2020 00:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00452 * 2 1 4 4 H 1.48508 * 109.47219 * 269.99983 * 3 2 1 5 5 H 1.48503 * 109.47263 * 29.99529 * 3 2 1 6 6 H 1.48499 * 109.47399 * 149.99615 * 3 2 1 7 7 C 1.37882 * 119.99419 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99725 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46689 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46622 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99573 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46990 * 180.02562 * 13 12 11 15 15 C 1.38204 * 120.00719 * 259.72282 * 14 13 12 16 16 C 1.38329 * 120.01650 * 179.77032 * 15 14 13 17 17 Cl 1.73601 * 119.99104 * 180.25421 * 16 15 14 18 18 C 1.38379 * 120.02268 * 0.50147 * 16 15 14 19 19 C 1.38169 * 120.01047 * 359.75760 * 18 16 15 20 20 C 1.38438 * 120.00802 * 79.99960 * 14 13 12 21 21 F 1.35107 * 120.00931 * 359.97438 * 20 14 13 22 22 H 0.96997 * 119.99459 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46923 * 60.00568 * 9 7 2 24 24 H 1.08995 * 109.47308 * 300.00206 * 9 7 2 25 25 H 1.09006 * 109.46807 * 60.00626 * 10 9 7 26 26 H 1.08995 * 109.47458 * 300.00243 * 10 9 7 27 27 H 1.08990 * 109.46924 * 60.00331 * 11 10 9 28 28 H 1.09004 * 109.46978 * 300.00208 * 11 10 9 29 29 H 1.00896 * 111.00219 * 303.95583 * 12 11 10 30 30 H 1.09002 * 109.46991 * 299.99841 * 13 12 11 31 31 H 1.09000 * 109.47202 * 60.00133 * 13 12 11 32 32 H 1.08007 * 119.99443 * 0.02562 * 15 14 13 33 33 H 1.07994 * 119.99766 * 179.71996 * 18 16 15 34 34 H 1.07996 * 120.00445 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0015 11 6 1.4800 -4.9872 0.0020 12 7 2.4346 -6.1037 0.0024 13 6 1.7342 -7.3951 0.0035 14 6 2.7436 -8.5140 0.0045 15 6 3.0481 -9.1713 -1.1725 16 6 3.9781 -10.1952 -1.1727 17 17 4.3649 -11.0160 -2.6527 18 6 4.5966 -10.5690 0.0074 19 6 4.2891 -9.9162 1.1857 20 6 3.3620 -8.8876 1.1854 21 9 3.0610 -8.2488 2.3373 22 1 -0.4849 0.8401 -0.0004 23 1 0.6239 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 2.8724 -3.6040 0.8910 26 1 2.8711 -3.6048 -0.8890 27 1 0.8531 -5.0450 -0.8877 28 1 0.8537 -5.0447 0.8923 29 1 3.0694 -6.0370 -0.7790 30 1 1.1096 -7.4689 0.8938 31 1 1.1090 -7.4701 -0.8862 32 1 2.5627 -8.8827 -2.0932 33 1 5.3193 -11.3715 0.0076 34 1 4.7715 -10.2083 2.1067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125953606.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:16 Heat of formation + Delta-G solvation = -47.487190 kcal Electronic energy + Delta-G solvation = -17349.638034 eV Core-core repulsion = 14221.834869 eV Total energy + Delta-G solvation = -3127.803165 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.00244 -39.58218 -36.95554 -36.31690 -33.78326 -32.25363 -30.81940 -30.21836 -26.87653 -24.82234 -23.17658 -22.33589 -21.67827 -20.11378 -17.87977 -17.01940 -16.63927 -16.24611 -15.82311 -15.36598 -14.69976 -14.59654 -14.20750 -14.06118 -13.69597 -13.47720 -13.27276 -13.11856 -12.35288 -11.93039 -11.82585 -11.60434 -11.46039 -11.37213 -11.09997 -10.83254 -10.57736 -10.49805 -9.69298 -9.53003 -9.29255 -9.05028 -8.79766 -8.32971 -8.25554 -5.98104 -4.00059 0.65274 0.74368 1.75028 3.06389 3.33588 3.39661 3.43742 3.96455 4.19090 4.35850 4.46663 4.56812 4.67501 4.87023 5.12553 5.31804 5.37803 5.44202 5.57919 5.67562 5.74534 5.78258 5.82276 5.96887 6.30244 6.39454 6.70078 6.73413 7.13704 7.24691 7.54063 7.70035 7.84758 8.02366 8.45640 9.07129 9.63868 11.13424 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029832 B = 0.002897 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.366109 B = 9663.694570 C =10063.099082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.685 5.685 13 C 0.097 3.903 14 C -0.103 4.103 15 C -0.077 4.077 16 C -0.050 4.050 17 Cl -0.066 7.066 18 C -0.083 4.083 19 C -0.147 4.147 20 C 0.131 3.869 21 F -0.123 7.123 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.339 0.661 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.194 -24.532 -1.572 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.068 4.068 12 N -0.316 5.316 13 C -0.032 4.032 14 C -0.105 4.105 15 C -0.096 4.096 16 C -0.077 4.077 17 Cl -0.038 7.038 18 C -0.102 4.102 19 C -0.166 4.166 20 C 0.111 3.889 21 F -0.101 7.101 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.157 0.843 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.128 -24.435 -0.966 25.472 hybrid contribution 0.097 0.931 -0.869 1.278 sum 7.225 -23.504 -1.836 24.658 Atomic orbital electron populations 1.69969 1.06066 1.26556 1.51053 1.25034 0.94857 0.99279 0.95386 0.86589 0.79885 0.83443 0.78062 1.20707 1.21238 1.19835 1.21261 0.93072 0.91054 1.50317 0.92661 1.19065 0.93997 0.91342 0.97134 1.21630 0.99217 0.92830 1.00812 1.22164 0.94028 0.90532 1.00126 1.60593 1.20409 1.00554 1.50027 1.20821 0.93121 0.87151 1.02129 1.19923 1.00067 0.98807 0.91657 1.20877 0.96395 0.94090 0.98229 1.20865 1.00725 0.97954 0.88125 1.98381 1.93442 1.78017 1.33913 1.20874 0.99347 0.99912 0.90094 1.21122 0.99124 0.96680 0.99628 1.17575 0.96504 0.92682 0.82135 1.91565 1.91619 1.80296 1.46630 0.93042 0.96803 0.96530 0.92472 0.93619 0.95515 0.91250 0.84303 0.89572 0.93726 0.84087 0.84077 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.23 5.41 -26.72 -0.14 -2.38 16 11 C 0.06 1.02 5.69 -3.82 -0.02 1.00 16 12 N -0.68 -10.01 6.49 -115.05 -0.75 -10.76 16 13 C 0.10 1.17 5.54 -4.97 -0.03 1.14 16 14 C -0.10 -1.12 5.40 -104.56 -0.56 -1.69 16 15 C -0.08 -0.72 9.45 -39.56 -0.37 -1.10 16 16 C -0.05 -0.44 6.32 -39.50 -0.25 -0.69 16 17 Cl -0.07 -0.56 28.95 -51.86 -1.50 -2.06 16 18 C -0.08 -0.66 9.83 -39.55 -0.39 -1.05 16 19 C -0.15 -1.28 10.03 -39.52 -0.40 -1.67 16 20 C 0.13 1.47 7.25 -39.42 -0.29 1.18 16 21 F -0.12 -1.62 16.66 2.25 0.04 -1.58 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.34 4.66 8.72 -39.29 -0.34 4.32 16 30 H 0.09 1.08 7.94 -51.93 -0.41 0.66 16 31 H 0.04 0.49 8.00 -51.93 -0.42 0.07 16 32 H 0.14 1.16 8.04 -52.48 -0.42 0.74 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 314.42 15.07 4.74 4.74 Total: -1.00 -30.64 314.42 -9.27 -39.92 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.52 Total: -2.06 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -3.00 Total: -18.56 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.01 Total: -37.30 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.64 -9.27 -39.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125953606.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.571 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds