Wall clock time and date at job start Mon Mar 30 2020 00:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00452 * 2 1 4 4 H 1.48508 * 109.47219 * 269.99983 * 3 2 1 5 5 H 1.48503 * 109.47263 * 29.99529 * 3 2 1 6 6 H 1.48499 * 109.47399 * 149.99615 * 3 2 1 7 7 C 1.37882 * 119.99419 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99725 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46689 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46622 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99573 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46990 * 180.02562 * 13 12 11 15 15 C 1.38204 * 120.00719 * 259.72282 * 14 13 12 16 16 C 1.38329 * 120.01650 * 179.77032 * 15 14 13 17 17 Cl 1.73601 * 119.99104 * 180.25421 * 16 15 14 18 18 C 1.38379 * 120.02268 * 0.50147 * 16 15 14 19 19 C 1.38169 * 120.01047 * 359.75760 * 18 16 15 20 20 C 1.38438 * 120.00802 * 79.99960 * 14 13 12 21 21 F 1.35107 * 120.00931 * 359.97438 * 20 14 13 22 22 H 0.96997 * 119.99459 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46923 * 60.00568 * 9 7 2 24 24 H 1.08995 * 109.47308 * 300.00206 * 9 7 2 25 25 H 1.09006 * 109.46807 * 60.00626 * 10 9 7 26 26 H 1.08995 * 109.47458 * 300.00243 * 10 9 7 27 27 H 1.08990 * 109.46924 * 60.00331 * 11 10 9 28 28 H 1.09004 * 109.46978 * 300.00208 * 11 10 9 29 29 H 1.00896 * 111.00219 * 303.95583 * 12 11 10 30 30 H 1.09002 * 109.46991 * 299.99841 * 13 12 11 31 31 H 1.09000 * 109.47202 * 60.00133 * 13 12 11 32 32 H 1.08007 * 119.99443 * 0.02562 * 15 14 13 33 33 H 1.07994 * 119.99766 * 179.71996 * 18 16 15 34 34 H 1.07996 * 120.00445 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0015 11 6 1.4800 -4.9872 0.0020 12 7 2.4346 -6.1037 0.0024 13 6 1.7342 -7.3951 0.0035 14 6 2.7436 -8.5140 0.0045 15 6 3.0481 -9.1713 -1.1725 16 6 3.9781 -10.1952 -1.1727 17 17 4.3649 -11.0160 -2.6527 18 6 4.5966 -10.5690 0.0074 19 6 4.2891 -9.9162 1.1857 20 6 3.3620 -8.8876 1.1854 21 9 3.0610 -8.2488 2.3373 22 1 -0.4849 0.8401 -0.0004 23 1 0.6239 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 2.8724 -3.6040 0.8910 26 1 2.8711 -3.6048 -0.8890 27 1 0.8531 -5.0450 -0.8877 28 1 0.8537 -5.0447 0.8923 29 1 3.0694 -6.0370 -0.7790 30 1 1.1096 -7.4689 0.8938 31 1 1.1090 -7.4701 -0.8862 32 1 2.5627 -8.8827 -2.0932 33 1 5.3193 -11.3715 0.0076 34 1 4.7715 -10.2083 2.1067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125953606.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:16 Heat of formation + Delta-G solvation = -65.100742 kcal Electronic energy + Delta-G solvation = -17350.401815 eV Core-core repulsion = 14221.834869 eV Total energy + Delta-G solvation = -3128.566946 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.89643 -40.32823 -37.92848 -37.31751 -35.58887 -33.77319 -31.99158 -31.20494 -28.46092 -26.21737 -24.06862 -23.84238 -22.58916 -21.83926 -18.69322 -18.47605 -17.83622 -17.37249 -16.76380 -16.60816 -16.50816 -15.65528 -15.46708 -15.17241 -14.67169 -14.38457 -14.35151 -14.20323 -13.85917 -13.55283 -13.23488 -12.91465 -12.68061 -12.46826 -12.38218 -12.28057 -12.18553 -11.83308 -11.54460 -11.39707 -11.12792 -10.55451 -10.16581 -9.56936 -9.42656 -8.20511 -6.31473 -0.09594 0.04338 1.06692 1.39991 1.41559 1.52965 2.32767 2.41306 3.12644 3.21535 3.24225 3.58009 3.65670 3.98834 4.12100 4.21939 4.27658 4.41769 4.54930 4.66577 4.71146 4.78877 4.95887 5.01602 5.07043 5.08098 5.13286 5.23628 5.51320 5.65410 5.74542 5.85524 5.95401 6.26348 6.40125 6.85430 7.37752 8.91500 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029832 B = 0.002897 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.366109 B = 9663.694570 C =10063.099082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.073 3.927 12 N -0.689 5.689 13 C 0.099 3.901 14 C -0.114 4.114 15 C -0.077 4.077 16 C -0.054 4.054 17 Cl -0.060 7.060 18 C -0.075 4.075 19 C -0.141 4.141 20 C 0.106 3.894 21 F -0.141 7.141 22 H 0.264 0.736 23 H -0.007 1.007 24 H -0.009 1.009 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.061 0.939 29 H 0.346 0.654 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.152 0.848 33 H 0.168 0.832 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.809 -25.474 -2.100 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.055 4.055 12 N -0.321 5.321 13 C -0.029 4.029 14 C -0.115 4.115 15 C -0.096 4.096 16 C -0.081 4.081 17 Cl -0.031 7.031 18 C -0.094 4.094 19 C -0.160 4.160 20 C 0.086 3.914 21 F -0.120 7.120 22 H 0.073 0.927 23 H 0.011 0.989 24 H 0.009 0.991 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.164 0.836 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.170 0.830 33 H 0.186 0.814 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.755 -25.401 -1.501 26.909 hybrid contribution -0.398 1.131 -0.733 1.405 sum 8.357 -24.271 -2.233 25.766 Atomic orbital electron populations 1.70097 1.07796 1.27794 1.51739 1.25999 0.95805 1.03417 0.94710 0.85434 0.78639 0.78343 0.78560 1.19620 1.20677 1.18823 1.21707 0.93540 0.92462 1.50491 0.92302 1.18966 0.94399 0.93019 0.94829 1.21374 0.98051 0.92925 1.00698 1.21841 0.93851 0.89822 1.00015 1.60471 1.20128 1.00872 1.50585 1.20790 0.93524 0.86240 1.02390 1.19799 1.00450 0.98977 0.92287 1.20969 0.96511 0.94076 0.98063 1.21003 1.00541 0.97768 0.88747 1.98388 1.93342 1.77793 1.33622 1.21195 0.99020 0.99891 0.89262 1.21367 0.98136 0.95578 1.00883 1.17921 0.97885 0.93869 0.81696 1.91517 1.91976 1.80883 1.47576 0.92742 0.98854 0.99068 0.93189 0.92939 0.95087 0.92014 0.83575 0.90424 0.92283 0.83048 0.81411 0.81630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.09 -3.90 5.41 30.60 0.17 -3.73 16 11 C 0.07 2.53 5.69 86.31 0.49 3.02 16 12 N -0.69 -19.77 6.49 -517.91 -3.36 -23.13 16 13 C 0.10 2.33 5.54 85.56 0.47 2.81 16 14 C -0.11 -2.37 5.40 -19.82 -0.11 -2.47 16 15 C -0.08 -1.33 9.45 22.28 0.21 -1.12 16 16 C -0.05 -0.84 6.32 22.32 0.14 -0.70 16 17 Cl -0.06 -0.88 28.95 -2.72 -0.08 -0.96 16 18 C -0.08 -0.99 9.83 22.29 0.22 -0.77 16 19 C -0.14 -2.17 10.03 22.31 0.22 -1.94 16 20 C 0.11 2.28 7.25 22.37 0.16 2.44 16 21 F -0.14 -3.71 16.66 44.97 0.75 -2.96 16 22 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 23 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 24 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.35 9.14 8.72 -89.70 -0.78 8.36 16 30 H 0.08 1.95 7.94 -2.39 -0.02 1.93 16 31 H 0.06 1.22 8.00 -2.39 -0.02 1.20 16 32 H 0.15 2.21 8.04 -2.91 -0.02 2.19 16 33 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 34 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -65.85 314.42 2.76 -63.08 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.32 Total: 6.43 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 2.82 Total: -32.04 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -3.08 Total: -80.48 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.75 Total: -2.96 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -65.85 2.76 -63.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125953606.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.017 kcal (2) G-P(sol) polarization free energy of solvation -65.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds