Wall clock time and date at job start Mon Mar 30 2020 01:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99785 * 2 1 4 4 H 1.48501 * 109.47098 * 270.00634 * 3 2 1 5 5 H 1.48501 * 109.46954 * 30.00312 * 3 2 1 6 6 H 1.48494 * 109.47271 * 150.00308 * 3 2 1 7 7 C 1.37867 * 120.00480 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00717 * 159.09822 * 7 2 1 9 9 C 1.50709 * 120.00055 * 339.10091 * 7 2 1 10 10 C 1.52995 * 115.54618 * 323.05140 * 9 7 2 11 11 N 1.46905 * 109.47338 * 280.58014 * 10 9 7 12 12 C 1.46464 * 110.99487 * 37.40401 * 11 10 9 13 13 C 1.53257 * 109.85842 * 197.76822 * 12 11 10 14 14 S 1.81900 * 108.50396 * 297.99968 * 13 12 11 15 15 C 1.81900 * 101.91724 * 51.30248 * 14 13 12 16 16 C 1.46466 * 111.00219 * 163.38429 * 11 10 9 17 17 H 1.08994 * 109.34106 * 282.31251 * 16 11 10 18 18 C 1.50702 * 109.40338 * 42.11601 * 16 11 10 19 19 O 1.20817 * 120.00192 * 33.71045 * 18 16 11 20 20 O 1.34233 * 119.99949 * 213.98139 * 18 16 11 21 21 C 1.52993 * 117.49753 * 108.71900 * 9 7 2 22 22 C 1.52994 * 117.49899 * 177.37777 * 9 7 2 23 23 H 0.97003 * 120.00143 * 5.02670 * 1 2 3 24 24 H 1.08998 * 109.47463 * 160.57986 * 10 9 7 25 25 H 1.09005 * 109.47692 * 40.57918 * 10 9 7 26 26 H 1.09001 * 109.41055 * 77.65231 * 12 11 10 27 27 H 1.08998 * 109.34781 * 317.84232 * 12 11 10 28 28 H 1.09000 * 109.63455 * 178.29423 * 13 12 11 29 29 H 1.08997 * 109.62790 * 57.69922 * 13 12 11 30 30 H 1.08993 * 109.63017 * 188.98928 * 15 14 13 31 31 H 1.09000 * 109.79136 * 68.49025 * 15 14 13 32 32 H 0.96689 * 117.00065 * 179.72818 * 20 18 16 33 33 H 1.09008 * 117.49459 * 215.00599 * 21 9 7 34 34 H 1.08997 * 117.50566 * 0.02562 * 21 9 7 35 35 H 1.08998 * 117.50210 * 359.97438 * 22 9 7 36 36 H 1.09007 * 117.49605 * 144.97166 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0313 -1.2246 -0.3342 9 6 1.3255 -2.4564 0.4645 10 6 0.3605 -2.2919 1.6403 11 7 1.1236 -2.2189 2.8935 12 6 2.3695 -1.4720 2.7066 13 6 3.3359 -1.7752 3.8567 14 16 2.5730 -1.2223 5.4127 15 6 0.9373 -2.0139 5.3312 16 6 0.3013 -1.6777 3.9780 17 1 0.2290 -0.5955 3.8707 18 6 -1.0780 -2.2810 3.9094 19 8 -1.2213 -3.4195 3.5313 20 8 -2.1479 -1.5517 4.2633 21 6 0.9750 -3.5018 -0.5962 22 6 2.1235 -3.7592 0.3823 23 1 -0.4850 0.8368 -0.0736 24 1 -0.3169 -3.1451 1.6766 25 1 -0.2158 -1.3756 1.5120 26 1 2.1523 -0.4040 2.6882 27 1 2.8278 -1.7647 1.7619 28 1 4.2729 -1.2413 3.6983 29 1 3.5254 -2.8476 3.9027 30 1 0.3071 -1.6359 6.1361 31 1 1.0450 -3.0943 5.4268 32 1 -3.0122 -1.9804 4.1987 33 1 0.0568 -4.0724 -0.4563 34 1 1.2358 -3.2767 -1.6303 35 1 3.1395 -3.7033 -0.0084 36 1 1.9613 -4.4990 1.1663 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126641465.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:09 Heat of formation + Delta-G solvation = -60.633803 kcal Electronic energy + Delta-G solvation = -20334.917167 eV Core-core repulsion = 17332.047933 eV Total energy + Delta-G solvation = -3002.869234 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.70419 -39.65889 -37.37434 -36.90216 -34.26008 -32.86164 -31.40551 -27.88082 -26.27880 -25.99482 -23.51604 -22.78315 -21.44673 -20.60744 -19.33509 -18.39093 -18.15844 -16.91707 -16.68591 -16.57188 -16.39113 -16.00193 -15.44457 -14.97686 -14.70756 -14.46885 -14.39254 -14.05574 -13.41602 -13.12506 -13.01543 -12.87506 -12.73758 -12.53866 -12.43429 -12.38796 -12.19146 -12.03616 -11.51958 -11.14285 -10.93501 -10.69751 -10.49269 -10.12076 -9.18425 -8.69420 -8.13552 -6.13721 0.71992 1.06473 1.36380 1.43071 1.44652 1.51271 2.05911 2.37880 2.81003 2.98050 3.61128 3.70661 3.92337 4.06615 4.22246 4.27272 4.32773 4.39376 4.56171 4.60268 4.66952 4.77510 4.94642 5.00131 5.02500 5.14821 5.24147 5.46004 5.50936 5.54731 5.60008 5.87332 6.13032 6.20699 6.39266 6.79832 6.95247 7.39781 8.85617 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.015031 B = 0.009417 C = 0.008250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.372319 B = 2972.487086 C = 3393.186386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.040 3.960 3 Si 0.924 3.076 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.256 1.256 7 C -0.500 4.500 8 H 0.063 0.937 9 C 0.028 3.972 10 C 0.089 3.911 11 N -0.523 5.523 12 C 0.058 3.942 13 C -0.070 4.070 14 S -0.272 6.272 15 C -0.054 4.054 16 C 0.093 3.907 17 H 0.067 0.933 18 C 0.493 3.507 19 O -0.521 6.521 20 O -0.509 6.509 21 C -0.207 4.207 22 C -0.171 4.171 23 H 0.262 0.738 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.021 0.979 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.131 0.869 31 H 0.099 0.901 32 H 0.428 0.572 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.980 -1.796 9.819 10.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.161 4.161 3 Si 0.750 3.250 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.537 4.537 8 H 0.081 0.919 9 C 0.028 3.972 10 C -0.038 4.038 11 N -0.250 5.250 12 C -0.070 4.070 13 C -0.218 4.218 14 S -0.044 6.044 15 C -0.203 4.203 16 C -0.019 4.019 17 H 0.085 0.915 18 C 0.333 3.667 19 O -0.409 6.409 20 O -0.323 6.323 21 C -0.245 4.245 22 C -0.209 4.209 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.040 0.960 27 H 0.145 0.855 28 H 0.139 0.861 29 H 0.116 0.884 30 H 0.149 0.851 31 H 0.118 0.882 32 H 0.290 0.710 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.730 -1.579 10.784 11.035 hybrid contribution -1.306 0.600 -1.703 2.228 sum 0.424 -0.979 9.081 9.143 Atomic orbital electron populations 1.70026 1.07376 1.27412 1.48319 1.25445 0.94990 1.01368 0.94318 0.86058 0.80053 0.80587 0.78308 1.20642 1.21328 1.17970 1.20606 0.98078 0.91143 1.43842 0.91875 1.19023 0.96510 0.88498 0.93202 1.21773 0.95206 1.00441 0.86338 1.61344 1.05471 1.52658 1.05512 1.22678 0.89128 0.94908 1.00305 1.23758 1.00805 1.05263 0.91961 1.86640 1.16163 1.69883 1.31741 1.23335 0.95833 1.04593 0.96549 1.21473 0.87164 0.98189 0.95037 0.91482 1.23131 0.87369 0.83810 0.72420 1.90675 1.86962 1.20462 1.42840 1.84497 1.19274 1.48770 1.79730 1.22952 0.98273 1.07210 0.96105 1.22772 0.95245 1.01328 1.01528 0.92864 0.93808 0.92189 0.96018 0.85472 0.86143 0.88421 0.85059 0.88218 0.71013 0.91854 0.91083 0.89800 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.77 11.15 21.44 0.24 -47.53 16 2 C 0.04 2.03 4.76 84.65 0.40 2.43 16 3 Si 0.92 40.02 29.59 68.60 2.03 42.05 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.50 -24.65 6.05 25.60 0.15 -24.49 16 8 H 0.06 3.09 7.90 -2.91 -0.02 3.06 16 9 C 0.03 1.32 0.98 -52.93 -0.05 1.27 16 10 C 0.09 4.10 4.07 86.30 0.35 4.45 16 11 N -0.52 -20.50 4.34 -876.61 -3.81 -24.30 16 12 C 0.06 2.21 4.17 86.47 0.36 2.57 16 13 C -0.07 -2.09 6.69 72.07 0.48 -1.61 16 14 S -0.27 -7.85 22.40 -56.49 -1.27 -9.11 16 15 C -0.05 -1.51 5.95 72.07 0.43 -1.09 16 16 C 0.09 3.23 2.29 44.34 0.10 3.33 16 17 H 0.07 2.51 7.91 -2.39 -0.02 2.49 16 18 C 0.49 16.81 6.35 71.24 0.45 17.26 16 19 O -0.52 -20.47 15.44 21.99 0.34 -20.13 16 20 O -0.51 -13.76 13.42 -51.45 -0.69 -14.45 16 21 C -0.21 -9.35 9.88 30.61 0.30 -9.05 16 22 C -0.17 -7.05 9.36 30.61 0.29 -6.77 16 23 H 0.26 13.51 8.32 -92.71 -0.77 12.74 16 24 H 0.04 2.13 5.94 -2.39 -0.01 2.11 16 25 H 0.06 3.11 5.25 -2.38 -0.01 3.10 16 26 H 0.02 0.91 7.72 -2.39 -0.02 0.89 16 27 H 0.13 5.29 3.95 -2.39 -0.01 5.28 16 28 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.43 7.39 9.10 -74.06 -0.67 6.72 16 33 H 0.06 2.82 8.09 -2.38 -0.02 2.80 16 34 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 Total: -1.00 -58.33 299.37 0.54 -57.79 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.42 Total: 27.38 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 3.27 Total: -11.70 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -3.57 Total: -71.83 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.35 Total: -34.58 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.27 Total: -9.11 kcal Total: -58.33 0.54 -57.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126641465.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.842 kcal (2) G-P(sol) polarization free energy of solvation -58.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds