Wall clock time and date at job start Mon Mar 30 2020 01:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00621 * 3 2 1 5 5 H 1.48506 * 109.47143 * 30.00567 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00282 * 3 2 1 7 7 C 1.38798 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99590 * 359.71971 * 7 2 1 9 9 S 1.76199 * 120.00102 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47127 * 121.04565 * 359.72098 * 13 11 10 15 15 C 1.52800 * 108.93830 * 232.14635 * 14 13 11 16 16 O 1.43093 * 109.41706 * 306.14837 * 15 14 13 17 17 C 1.42580 * 113.95653 * 59.98712 * 16 15 14 18 18 C 1.53375 * 113.66967 * 72.57900 * 17 16 15 19 19 C 1.53853 * 86.96116 * 89.64238 * 18 17 16 20 20 C 1.53354 * 113.70695 * 170.65152 * 17 16 15 21 21 C 1.47326 * 121.04533 * 180.02562 * 13 11 10 22 22 H 0.96995 * 120.00138 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 24 24 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 25 25 H 1.09001 * 109.59758 * 351.96548 * 14 13 11 26 26 H 1.09001 * 109.59889 * 112.42912 * 14 13 11 27 27 H 1.09000 * 109.55678 * 186.10513 * 15 14 13 28 28 H 1.08996 * 109.37803 * 66.08431 * 15 14 13 29 29 H 1.09001 * 113.63259 * 204.15944 * 18 17 16 30 30 H 1.08994 * 113.62882 * 335.12775 * 18 17 16 31 31 H 1.09006 * 113.60213 * 270.56381 * 19 18 17 32 32 H 1.08995 * 113.60219 * 139.69260 * 19 18 17 33 33 H 1.08993 * 113.63590 * 24.91095 * 20 17 16 34 34 H 1.09008 * 113.63290 * 155.78903 * 20 17 16 35 35 H 1.09002 * 109.74358 * 251.10507 * 21 13 11 36 36 H 1.08997 * 109.74794 * 11.82792 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4478 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1372 0.0036 9 16 3.7724 -1.2019 -0.0012 10 6 4.0867 -2.9844 0.0069 11 6 5.5732 -3.2323 0.0068 12 8 6.3441 -2.2961 0.0022 13 7 6.0459 -4.4944 0.0128 14 6 5.1316 -5.6470 0.0257 15 6 5.5244 -6.5789 1.1711 16 8 6.9104 -6.9156 1.0564 17 6 7.7856 -5.7911 1.1079 18 6 7.9127 -5.1733 2.5059 19 6 9.0813 -6.1462 2.7401 20 6 9.2683 -6.1681 1.2130 21 6 7.4944 -4.7633 0.0135 22 1 -0.4850 0.8400 0.0004 23 1 3.6441 -3.4274 0.8990 24 1 3.6435 -3.4356 -0.8809 25 1 4.1085 -5.3006 0.1724 26 1 5.2061 -6.1834 -0.9203 27 1 4.9243 -7.4877 1.1243 28 1 5.3498 -6.0763 2.1224 29 1 8.2121 -4.1253 2.4949 30 1 7.0517 -5.3623 3.1470 31 1 8.7738 -7.1057 3.1559 32 1 9.9194 -5.7006 3.2760 33 1 9.4972 -7.1566 0.8150 34 1 9.9428 -5.3959 0.8429 35 1 7.7953 -5.1619 -0.9554 36 1 8.0398 -3.8422 0.2189 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127451810.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:00 Heat of formation + Delta-G solvation = -73.847007 kcal Electronic energy + Delta-G solvation = -18988.714823 eV Core-core repulsion = 15985.272622 eV Total energy + Delta-G solvation = -3003.442201 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.87515 -40.13464 -37.43593 -35.78457 -34.68809 -31.93674 -30.74165 -28.21600 -27.76765 -26.82614 -24.80353 -23.48189 -20.79838 -20.19308 -19.61960 -18.33002 -17.71068 -17.15801 -17.03495 -16.85851 -16.24055 -15.88652 -15.71655 -15.45493 -14.96778 -14.78559 -14.64833 -14.35326 -13.63633 -13.41509 -13.33941 -13.10548 -13.03543 -12.70697 -12.43537 -12.11275 -11.92138 -11.88721 -11.79592 -11.45553 -11.18658 -10.91644 -10.88754 -10.55351 -9.60968 -9.02893 -8.53150 -6.24668 0.93129 1.30171 1.42207 1.44359 1.50825 1.92603 2.23441 2.54936 2.65154 2.85291 3.41682 3.47448 3.65548 3.65827 3.86871 3.93200 4.01526 4.13250 4.24538 4.35142 4.36330 4.45410 4.61218 4.70036 4.75845 4.76302 4.83972 5.01021 5.06400 5.15465 5.32559 5.35536 5.69172 6.09575 6.11523 6.15971 6.92030 6.97512 8.59240 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037614 B = 0.004354 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.216417 B = 6429.568487 C = 6779.081878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.048 3.952 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.238 1.238 7 C -0.529 4.529 8 H 0.064 0.936 9 S -0.174 6.174 10 C -0.107 4.107 11 C 0.537 3.463 12 O -0.559 6.559 13 N -0.610 5.610 14 C 0.065 3.935 15 C 0.047 3.953 16 O -0.359 6.359 17 C 0.076 3.924 18 C -0.167 4.167 19 C -0.125 4.125 20 C -0.113 4.113 21 C 0.098 3.902 22 H 0.277 0.723 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.138 0.862 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.432 -16.444 2.986 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.157 4.157 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.162 1.162 7 C -0.677 4.677 8 H 0.082 0.918 9 S 0.052 5.948 10 C -0.257 4.257 11 C 0.324 3.676 12 O -0.438 6.438 13 N -0.344 5.344 14 C -0.057 4.057 15 C -0.030 4.030 16 O -0.278 6.278 17 C 0.035 3.965 18 C -0.205 4.205 19 C -0.162 4.162 20 C -0.150 4.150 21 C -0.024 4.024 22 H 0.087 0.913 23 H 0.130 0.870 24 H 0.130 0.870 25 H 0.122 0.878 26 H 0.114 0.886 27 H 0.156 0.844 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.448 -15.174 2.955 23.312 hybrid contribution -1.543 0.076 -0.063 1.546 sum 15.905 -15.099 2.893 22.120 Atomic orbital electron populations 1.70009 1.07265 1.29060 1.49048 1.25526 0.95232 1.02152 0.92825 0.85896 0.80689 0.79733 0.80245 1.18681 1.18236 1.16155 1.22439 0.90063 0.96763 1.58402 0.91827 1.84730 1.06659 1.05826 1.97570 1.23267 0.95580 0.99787 1.07098 1.20027 0.89665 0.82645 0.75221 1.90669 1.59259 1.43125 1.50715 1.48136 1.07829 1.05017 1.73458 1.22621 0.94689 0.86843 1.01569 1.23051 0.82402 1.00759 0.96760 1.87904 1.16225 1.29873 1.93775 1.22712 0.93105 0.86922 0.93778 1.23473 1.00196 0.99877 0.96978 1.22757 0.97788 0.99403 0.96267 1.22943 0.91360 1.03789 0.96937 1.22287 0.80407 0.99638 1.00086 0.91315 0.86976 0.86952 0.87756 0.88612 0.84391 0.92944 0.90134 0.91909 0.89591 0.89925 0.89371 0.87353 0.89726 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.44 13.97 21.65 0.30 -55.14 16 2 C 0.05 2.82 5.50 84.86 0.47 3.28 16 3 Si 0.91 44.81 27.74 68.60 1.90 46.71 16 4 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16 7 C -0.53 -30.62 10.04 67.95 0.68 -29.94 16 8 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 9 S -0.17 -8.83 18.55 -56.49 -1.05 -9.88 16 10 C -0.11 -4.05 4.53 71.24 0.32 -3.73 16 11 C 0.54 19.14 7.73 87.66 0.68 19.82 16 12 O -0.56 -24.24 15.35 -3.02 -0.05 -24.28 16 13 N -0.61 -16.16 3.03 -818.62 -2.48 -18.64 16 14 C 0.07 1.25 6.48 86.19 0.56 1.81 16 15 C 0.05 0.79 6.86 71.92 0.49 1.28 16 16 O -0.36 -7.03 10.44 -148.98 -1.56 -8.59 16 17 C 0.08 1.47 1.12 -10.57 -0.01 1.45 16 18 C -0.17 -3.34 7.23 31.01 0.22 -3.11 16 19 C -0.12 -1.86 8.02 31.17 0.25 -1.61 16 20 C -0.11 -1.64 7.47 31.00 0.23 -1.41 16 21 C 0.10 2.27 5.77 86.20 0.50 2.77 16 22 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 23 H 0.11 3.90 7.67 -2.39 -0.02 3.89 16 24 H 0.11 3.93 8.00 -2.40 -0.02 3.91 16 25 H 0.10 1.94 6.03 -2.39 -0.01 1.93 16 26 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 0.96 7.11 -2.39 -0.02 0.94 16 29 H 0.08 1.78 7.94 -2.39 -0.02 1.76 16 30 H 0.06 1.34 7.18 -2.39 -0.02 1.32 16 31 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 1.33 8.09 -2.38 -0.02 1.31 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.09 2.33 6.91 -2.39 -0.02 2.31 16 Total: -1.00 -71.61 304.92 2.50 -69.11 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.03 Total: 10.08 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 4.39 Total: -9.37 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -2.18 Total: -73.78 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.60 Total: -32.87 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.71 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.88 kcal Total: -71.61 2.50 -69.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127451810.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.735 kcal (2) G-P(sol) polarization free energy of solvation -71.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds