Wall clock time and date at job start Mon Mar 30 2020 01:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47010 * 2 1 4 4 C 1.46904 * 111.00108 * 199.71229 * 3 2 1 5 5 C 1.50706 * 109.46717 * 66.04572 * 4 3 2 6 6 H 1.07997 * 120.00142 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99649 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99764 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00257 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46949 * 89.99820 * 9 7 5 11 11 H 1.48498 * 109.47352 * 210.00032 * 9 7 5 12 12 H 1.48504 * 109.46982 * 330.00065 * 9 7 5 13 13 C 1.46897 * 111.00012 * 75.76136 * 3 2 1 14 14 C 1.50696 * 109.47309 * 199.76453 * 13 3 2 15 15 C 1.38262 * 119.97225 * 264.43358 * 14 13 3 16 16 C 1.38200 * 120.05273 * 180.02562 * 15 14 13 17 17 C 1.38449 * 119.98270 * 359.95827 * 16 15 14 18 18 F 1.35102 * 120.02589 * 180.29648 * 17 16 15 19 19 C 1.38545 * 119.93989 * 0.02562 * 17 16 15 20 20 Cl 1.73598 * 120.02321 * 180.02562 * 19 17 16 21 21 C 1.38220 * 119.96747 * 84.41236 * 14 13 3 22 22 H 1.09007 * 109.47224 * 174.85641 * 1 2 3 23 23 H 1.08997 * 109.47292 * 294.85433 * 1 2 3 24 24 H 1.08995 * 109.47579 * 54.85634 * 1 2 3 25 25 H 1.09003 * 109.47052 * 240.00270 * 2 1 3 26 26 H 1.09000 * 109.47132 * 120.00604 * 2 1 3 27 27 H 1.08997 * 109.47428 * 186.04668 * 4 3 2 28 28 H 1.09002 * 109.47006 * 306.05217 * 4 3 2 29 29 H 0.97004 * 119.99854 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.47343 * 79.76345 * 13 3 2 31 31 H 1.09006 * 109.47421 * 319.76774 * 13 3 2 32 32 H 1.08001 * 119.97182 * 0.02562 * 15 14 13 33 33 H 1.07996 * 120.00892 * 179.97438 * 16 15 14 34 34 H 1.07995 * 119.99666 * 0.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4123 1.4510 -0.4626 5 6 3.4796 1.0469 -1.9129 6 1 2.5779 0.7693 -2.4385 7 6 4.6921 1.0327 -2.5690 8 7 4.7507 0.6806 -3.8348 9 14 6.2517 1.5136 -1.6602 10 1 6.8548 0.3069 -1.0394 11 1 7.2168 2.1134 -2.6162 12 1 5.9231 2.5027 -0.6024 13 6 1.8771 1.9937 1.3293 14 6 1.9164 3.4947 1.2013 15 6 3.1056 4.1734 1.3935 16 6 3.1435 5.5499 1.2770 17 6 1.9901 6.2501 0.9667 18 9 2.0274 7.5952 0.8468 19 6 0.7988 5.5695 0.7739 20 17 -0.6486 6.4451 0.3841 21 6 0.7638 4.1917 0.8913 22 1 -0.3634 -1.0236 -0.0921 23 1 -0.3634 0.4319 0.9324 24 1 -0.3634 0.5915 -0.8403 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.7842 2.4695 -0.3516 28 1 4.0252 0.7735 0.1321 29 1 5.6038 0.6709 -4.2965 30 1 2.6940 1.6622 1.9703 31 1 0.9258 1.6912 1.7674 32 1 4.0056 3.6273 1.6348 33 1 4.0726 6.0794 1.4277 34 1 -0.1645 3.6605 0.7415 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127610546.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:14 Heat of formation + Delta-G solvation = -26.048267 kcal Electronic energy + Delta-G solvation = -18491.716410 eV Core-core repulsion = 15364.842906 eV Total energy + Delta-G solvation = -3126.873504 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.87933 -39.36022 -37.04259 -36.34272 -32.65422 -31.63750 -30.93118 -29.91298 -27.50754 -24.78915 -23.14954 -22.14780 -21.59129 -19.83218 -17.70923 -16.97926 -16.54105 -15.97548 -15.68560 -14.96798 -14.56397 -14.41860 -13.92824 -13.77660 -13.36701 -13.34177 -12.86941 -12.70373 -12.43093 -12.02237 -11.72702 -11.44702 -11.32939 -11.16342 -11.12013 -10.86541 -10.75816 -10.45599 -10.09778 -9.87660 -9.30758 -8.89163 -8.61398 -8.48400 -7.50734 -6.08776 -4.05984 1.04588 1.17932 2.04422 3.23389 3.30900 3.32139 3.49241 4.14984 4.37492 4.67672 4.70283 4.94385 5.17748 5.24031 5.24817 5.39912 5.61654 5.74463 5.79987 5.88696 5.95555 5.99556 6.01884 6.16708 6.26107 6.53931 6.61173 6.63928 6.76811 6.84482 6.92117 7.55335 7.82613 7.96116 8.60520 9.00218 9.52633 11.04370 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.016688 B = 0.006169 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.473358 B = 4537.507423 C = 5390.897986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 N -0.522 5.522 4 C 0.159 3.841 5 C -0.509 4.509 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.086 3.914 14 C -0.056 4.056 15 C -0.076 4.076 16 C -0.142 4.142 17 C 0.099 3.901 18 F -0.133 7.133 19 C -0.073 4.073 20 Cl -0.060 7.060 21 C -0.061 4.061 22 H 0.050 0.950 23 H 0.042 0.958 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.020 0.980 27 H 0.032 0.968 28 H -0.017 1.017 29 H 0.264 0.736 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 6.756 12.956 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.246 5.246 4 C 0.033 3.967 5 C -0.547 4.547 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.538 5.538 9 Si 0.700 3.300 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.042 4.042 14 C -0.057 4.057 15 C -0.095 4.095 16 C -0.161 4.161 17 C 0.079 3.921 18 F -0.111 7.111 19 C -0.101 4.101 20 Cl -0.031 7.031 21 C -0.080 4.080 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.001 0.999 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.041 7.112 12.424 15.954 hybrid contribution 1.405 0.168 0.728 1.591 sum -5.636 7.281 13.152 16.055 Atomic orbital electron populations 1.21796 0.96276 1.00696 1.01415 1.22036 0.94567 0.89325 1.01413 1.61993 1.24186 1.17584 1.20850 1.20269 0.83518 0.96254 0.96687 1.21012 0.95395 1.44901 0.93392 0.90058 1.24892 0.98684 0.94952 0.94733 1.69887 1.25813 1.48465 1.09597 0.86904 0.83866 0.79183 0.80047 1.20353 1.21127 1.19185 1.21083 1.01294 0.89307 0.92504 1.19879 0.92179 0.96387 0.97292 1.21093 0.98152 0.92994 0.97276 1.21052 0.97003 0.94904 1.03158 1.17358 0.93482 0.77352 1.03949 1.91507 1.97090 1.28977 1.93573 1.20924 0.87434 0.93330 1.08378 1.98364 1.35946 1.76117 1.92678 1.20786 0.99837 0.90270 0.97076 0.93126 0.93905 0.91881 0.88845 0.96162 0.95033 0.99889 0.92642 0.94165 0.90282 0.84683 0.84096 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.96 37.16 0.37 -1.71 16 2 C 0.05 0.96 5.51 -3.83 -0.02 0.94 16 3 N -0.52 -10.03 4.34 -237.51 -1.03 -11.06 16 4 C 0.16 3.63 3.61 -4.97 -0.02 3.61 16 5 C -0.51 -13.97 8.79 -34.44 -0.30 -14.28 16 6 H 0.08 2.45 7.56 -52.49 -0.40 2.05 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 9 Si 0.87 20.93 27.47 -169.99 -4.67 16.26 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 13 C 0.09 1.31 4.94 -4.98 -0.02 1.29 16 14 C -0.06 -0.84 5.04 -104.62 -0.53 -1.37 16 15 C -0.08 -1.11 8.40 -39.59 -0.33 -1.44 16 16 C -0.14 -1.95 10.03 -39.52 -0.40 -2.35 16 17 C 0.10 1.45 7.28 -39.39 -0.29 1.16 16 18 F -0.13 -1.96 16.84 2.25 0.04 -1.92 16 19 C -0.07 -1.07 6.33 -39.44 -0.25 -1.31 16 20 Cl -0.06 -0.81 28.62 -51.86 -1.48 -2.29 16 21 C -0.06 -0.87 9.50 -39.56 -0.38 -1.24 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.54 6.89 -51.93 -0.36 0.18 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.09 1.92 6.58 -51.93 -0.34 1.58 16 26 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 27 H 0.03 0.73 5.38 -51.93 -0.28 0.45 16 28 H -0.02 -0.38 7.55 -51.93 -0.39 -0.77 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.04 0.59 7.90 -51.93 -0.41 0.18 16 31 H 0.08 1.03 6.54 -51.93 -0.34 0.69 16 32 H 0.14 1.83 7.99 -52.49 -0.42 1.41 16 33 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.14 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 301.92 15.07 4.55 4.55 Total: -1.00 -29.43 301.92 -8.30 -37.73 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -4.21 Total: -2.07 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.26 Total: -14.85 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.26 Total: -37.40 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.48 Total: -2.29 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.43 -8.30 -37.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127610546.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.679 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds