Wall clock time and date at job start Mon Mar 30 2020 01:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46895 * 109.47010 * 2 1 4 4 C 1.46904 * 111.00108 * 199.71229 * 3 2 1 5 5 C 1.50706 * 109.46717 * 66.04572 * 4 3 2 6 6 H 1.07997 * 120.00142 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99649 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99764 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00257 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46949 * 89.99820 * 9 7 5 11 11 H 1.48498 * 109.47352 * 210.00032 * 9 7 5 12 12 H 1.48504 * 109.46982 * 330.00065 * 9 7 5 13 13 C 1.46897 * 111.00012 * 75.76136 * 3 2 1 14 14 C 1.50696 * 109.47309 * 199.76453 * 13 3 2 15 15 C 1.38262 * 119.97225 * 264.43358 * 14 13 3 16 16 C 1.38200 * 120.05273 * 180.02562 * 15 14 13 17 17 C 1.38449 * 119.98270 * 359.95827 * 16 15 14 18 18 F 1.35102 * 120.02589 * 180.29648 * 17 16 15 19 19 C 1.38545 * 119.93989 * 0.02562 * 17 16 15 20 20 Cl 1.73598 * 120.02321 * 180.02562 * 19 17 16 21 21 C 1.38220 * 119.96747 * 84.41236 * 14 13 3 22 22 H 1.09007 * 109.47224 * 174.85641 * 1 2 3 23 23 H 1.08997 * 109.47292 * 294.85433 * 1 2 3 24 24 H 1.08995 * 109.47579 * 54.85634 * 1 2 3 25 25 H 1.09003 * 109.47052 * 240.00270 * 2 1 3 26 26 H 1.09000 * 109.47132 * 120.00604 * 2 1 3 27 27 H 1.08997 * 109.47428 * 186.04668 * 4 3 2 28 28 H 1.09002 * 109.47006 * 306.05217 * 4 3 2 29 29 H 0.97004 * 119.99854 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.47343 * 79.76345 * 13 3 2 31 31 H 1.09006 * 109.47421 * 319.76774 * 13 3 2 32 32 H 1.08001 * 119.97182 * 0.02562 * 15 14 13 33 33 H 1.07996 * 120.00892 * 179.97438 * 16 15 14 34 34 H 1.07995 * 119.99666 * 0.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4123 1.4510 -0.4626 5 6 3.4796 1.0469 -1.9129 6 1 2.5779 0.7693 -2.4385 7 6 4.6921 1.0327 -2.5690 8 7 4.7507 0.6806 -3.8348 9 14 6.2517 1.5136 -1.6602 10 1 6.8548 0.3069 -1.0394 11 1 7.2168 2.1134 -2.6162 12 1 5.9231 2.5027 -0.6024 13 6 1.8771 1.9937 1.3293 14 6 1.9164 3.4947 1.2013 15 6 3.1056 4.1734 1.3935 16 6 3.1435 5.5499 1.2770 17 6 1.9901 6.2501 0.9667 18 9 2.0274 7.5952 0.8468 19 6 0.7988 5.5695 0.7739 20 17 -0.6486 6.4451 0.3841 21 6 0.7638 4.1917 0.8913 22 1 -0.3634 -1.0236 -0.0921 23 1 -0.3634 0.4319 0.9324 24 1 -0.3634 0.5915 -0.8403 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.7842 2.4695 -0.3516 28 1 4.0252 0.7735 0.1321 29 1 5.6038 0.6709 -4.2965 30 1 2.6940 1.6622 1.9703 31 1 0.9258 1.6912 1.7674 32 1 4.0056 3.6273 1.6348 33 1 4.0726 6.0794 1.4277 34 1 -0.1645 3.6605 0.7415 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127610546.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:13 Heat of formation + Delta-G solvation = -43.097329 kcal Electronic energy + Delta-G solvation = -18492.455713 eV Core-core repulsion = 15364.842906 eV Total energy + Delta-G solvation = -3127.612807 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.00138 -40.49917 -38.39732 -37.48218 -34.71338 -32.81899 -32.05681 -31.44084 -29.09177 -26.17922 -24.31697 -23.75116 -22.81106 -21.29599 -18.98654 -18.81197 -17.69978 -17.18121 -16.81637 -16.60948 -16.01702 -15.84409 -15.33118 -14.91061 -14.63469 -14.59114 -14.38956 -14.17959 -13.90769 -13.43885 -12.91677 -12.75379 -12.73747 -12.52856 -12.40578 -12.30719 -12.04564 -11.86211 -11.79724 -11.51041 -11.31182 -10.75746 -9.97261 -9.61937 -8.98148 -8.24995 -6.27306 -0.07158 0.10126 0.96006 1.35251 1.37587 1.47432 2.36527 2.37494 3.06142 3.09103 3.38229 3.62161 3.77228 4.09109 4.17150 4.28519 4.34736 4.55862 4.61850 4.68799 4.77576 4.86541 4.90987 4.95415 5.03790 5.08046 5.12971 5.32320 5.45865 5.48711 5.60138 5.69354 6.04141 6.42498 6.69418 6.79968 7.35836 8.91783 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.016688 B = 0.006169 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.473358 B = 4537.507423 C = 5390.897986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.054 3.946 3 N -0.538 5.538 4 C 0.170 3.830 5 C -0.511 4.511 6 H 0.036 0.964 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.941 3.059 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.239 1.239 13 C 0.088 3.912 14 C -0.069 4.069 15 C -0.084 4.084 16 C -0.139 4.139 17 C 0.087 3.913 18 F -0.136 7.136 19 C -0.083 4.083 20 Cl -0.055 7.055 21 C -0.063 4.063 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.038 0.962 27 H 0.036 0.964 28 H -0.012 1.012 29 H 0.264 0.736 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.164 0.836 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 7.384 15.442 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.074 4.074 3 N -0.263 5.263 4 C 0.043 3.957 5 C -0.549 4.549 6 H 0.054 0.946 7 C -0.192 4.192 8 N -0.592 5.592 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.162 1.162 13 C -0.039 4.039 14 C -0.070 4.070 15 C -0.103 4.103 16 C -0.158 4.158 17 C 0.067 3.933 18 F -0.115 7.115 19 C -0.110 4.110 20 Cl -0.026 7.026 21 C -0.082 4.082 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.006 0.994 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.164 0.836 33 H 0.182 0.818 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.708 7.744 14.940 18.115 hybrid contribution 1.172 -0.039 -0.075 1.175 sum -5.536 7.705 14.864 17.634 Atomic orbital electron populations 1.21711 0.93683 1.01769 1.02036 1.22011 0.96675 0.88494 1.00181 1.61873 1.21809 1.18674 1.23923 1.19997 0.86068 0.96038 0.93625 1.21291 0.93790 1.44012 0.95833 0.94616 1.25854 1.02738 0.95062 0.95514 1.70062 1.26815 1.50594 1.11768 0.85806 0.78785 0.79746 0.79240 1.19302 1.21347 1.16216 1.21166 1.03187 0.89144 0.90391 1.19973 0.92679 0.96362 0.97979 1.21306 0.98403 0.93392 0.97165 1.21308 0.97585 0.94819 1.02093 1.17574 0.93997 0.77363 1.04398 1.91497 1.97128 1.29197 1.93648 1.21067 0.87791 0.93643 1.08539 1.98363 1.35617 1.76006 1.92641 1.20923 1.00276 0.90263 0.96786 0.91463 0.91248 0.93619 0.93042 0.94337 0.94630 0.99410 0.92667 0.92883 0.87739 0.83554 0.81805 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.96 71.98 0.72 -2.91 16 2 C 0.05 1.85 5.51 86.30 0.48 2.33 16 3 N -0.54 -19.92 4.34 -905.36 -3.93 -23.86 16 4 C 0.17 7.55 3.61 85.56 0.31 7.86 16 5 C -0.51 -28.68 8.79 25.60 0.22 -28.45 16 6 H 0.04 2.27 7.56 -2.91 -0.02 2.24 16 7 C 0.01 0.29 5.47 84.66 0.46 0.75 16 8 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 9 Si 0.94 42.56 27.47 68.60 1.88 44.44 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 13 C 0.09 2.42 4.94 85.56 0.42 2.84 16 14 C -0.07 -1.89 5.04 -19.86 -0.10 -1.99 16 15 C -0.08 -2.19 8.40 22.27 0.19 -2.00 16 16 C -0.14 -3.46 10.03 22.31 0.22 -3.23 16 17 C 0.09 2.39 7.28 22.39 0.16 2.55 16 18 F -0.14 -3.80 16.84 44.97 0.76 -3.05 16 19 C -0.08 -2.28 6.33 22.36 0.14 -2.14 16 20 Cl -0.06 -1.42 28.62 -2.72 -0.08 -1.49 16 21 C -0.06 -1.69 9.50 22.29 0.21 -1.48 16 22 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.07 1.50 6.89 -2.39 -0.02 1.49 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 2.18 6.58 -2.39 -0.02 2.16 16 26 H 0.04 1.17 8.00 -2.39 -0.02 1.15 16 27 H 0.04 1.56 5.38 -2.39 -0.01 1.55 16 28 H -0.01 -0.51 7.55 -2.39 -0.02 -0.53 16 29 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 30 H 0.05 1.35 7.90 -2.38 -0.02 1.33 16 31 H 0.10 2.32 6.54 -2.38 -0.02 2.30 16 32 H 0.15 3.44 7.99 -2.91 -0.02 3.41 16 33 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -64.94 301.92 3.42 -61.52 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.05 Total: 7.24 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 3.44 Total: -25.88 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -3.63 Total: -82.79 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.76 Total: -3.05 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.88 Total: 44.44 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.49 kcal Total: -64.94 3.42 -61.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127610546.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.424 kcal (2) G-P(sol) polarization free energy of solvation -64.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds