Wall clock time and date at job start Mon Mar 30 2020 01:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46905 * 109.46701 * 2 1 4 4 C 1.46904 * 110.99916 * 299.61026 * 3 2 1 5 5 C 1.50697 * 109.47119 * 166.10368 * 4 3 2 6 6 H 1.08001 * 120.00125 * 3.67154 * 5 4 3 7 7 C 1.37880 * 120.00121 * 183.67098 * 5 4 3 8 8 N 1.31518 * 119.99958 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00008 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47296 * 89.99552 * 9 7 5 11 11 H 1.48494 * 109.47139 * 210.00075 * 9 7 5 12 12 H 1.48503 * 109.46991 * 329.99933 * 9 7 5 13 13 C 1.46894 * 111.00132 * 175.66079 * 3 2 1 14 14 C 1.50701 * 109.47138 * 293.95481 * 13 3 2 15 15 C 1.38241 * 120.00407 * 260.27785 * 14 13 3 16 16 C 1.38224 * 120.04901 * 180.24591 * 15 14 13 17 17 C 1.38267 * 120.06018 * 359.75115 * 16 15 14 18 18 C 1.38274 * 120.01192 * 359.97009 * 17 16 15 19 19 Cl 1.73594 * 120.02581 * 179.97438 * 18 17 16 20 20 C 1.38399 * 120.01163 * 79.99327 * 14 13 3 21 21 F 1.35102 * 120.02835 * 0.03601 * 20 14 13 22 22 H 1.08998 * 109.47188 * 67.00161 * 1 2 3 23 23 H 1.09000 * 109.46663 * 187.00263 * 1 2 3 24 24 H 1.08996 * 109.47202 * 306.99427 * 1 2 3 25 25 H 1.08998 * 109.46998 * 240.00505 * 2 1 3 26 26 H 1.08996 * 109.47367 * 119.99383 * 2 1 3 27 27 H 1.08997 * 109.47466 * 286.10597 * 4 3 2 28 28 H 1.09004 * 109.46776 * 46.10594 * 4 3 2 29 29 H 0.97000 * 119.99790 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47639 * 173.95311 * 13 3 2 31 31 H 1.09000 * 109.47123 * 53.94804 * 13 3 2 32 32 H 1.07998 * 119.97653 * 359.97426 * 15 14 13 33 33 H 1.08002 * 119.97009 * 179.76771 * 16 15 14 34 34 H 1.08000 * 119.99209 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5562 2.1072 -1.1924 5 6 1.7773 3.5857 -1.0018 6 1 2.2719 3.9475 -0.1125 7 6 1.3483 4.4765 -1.9628 8 7 1.5409 5.7667 -1.7962 9 14 0.4923 3.8508 -3.5007 10 1 -0.9718 3.7871 -3.2611 11 1 0.7693 4.7728 -4.6312 12 1 0.9990 2.4948 -3.8323 13 6 3.4843 1.4257 0.1038 14 6 3.9075 0.8959 1.4496 15 6 4.2333 1.7735 2.4667 16 6 4.6265 1.2886 3.7000 17 6 4.6895 -0.0750 3.9199 18 6 4.3586 -0.9551 2.9061 19 17 4.4383 -2.6672 3.1816 20 6 3.9643 -0.4694 1.6694 21 9 3.6412 -1.3279 0.6775 22 1 -0.3633 0.4015 -0.9460 23 1 -0.3633 -1.0200 0.1253 24 1 -0.3633 0.6184 0.8208 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 2.1145 1.7657 -2.0639 28 1 0.4938 1.9153 -1.3433 29 1 1.2395 6.3934 -2.4725 30 1 3.8281 2.4542 -0.0062 31 1 3.9215 0.8104 -0.6826 32 1 4.1849 2.8389 2.2964 33 1 4.8844 1.9754 4.4926 34 1 4.9964 -0.4527 4.8840 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127671773.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:19 Heat of formation + Delta-G solvation = -17.668002 kcal Electronic energy + Delta-G solvation = -18795.427164 eV Core-core repulsion = 15668.917056 eV Total energy + Delta-G solvation = -3126.510108 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.98284 -39.25406 -37.16086 -36.43481 -32.64078 -32.01044 -30.37952 -29.94849 -27.61285 -24.90141 -22.95925 -22.32852 -21.66919 -19.61595 -17.65839 -17.01751 -16.58550 -16.12087 -16.06277 -14.72049 -14.59117 -14.41656 -13.94433 -13.59954 -13.38207 -13.26556 -13.00227 -12.48021 -12.28835 -12.14444 -11.66463 -11.45795 -11.35516 -11.25909 -10.96461 -10.80565 -10.74092 -10.49652 -10.06221 -9.85183 -9.34900 -8.79112 -8.67122 -8.57828 -7.42870 -6.08190 -4.05083 1.01062 1.09815 1.94969 3.26755 3.34569 3.37036 3.46494 4.11624 4.40045 4.65489 4.82688 4.87122 5.13407 5.16839 5.25302 5.50180 5.58569 5.75385 5.79341 5.88462 6.01290 6.01590 6.21761 6.24978 6.33316 6.45076 6.55171 6.67848 6.74565 6.84404 6.91811 7.57566 7.85575 7.96664 8.62089 8.98948 9.54072 11.04785 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029066 B = 0.005212 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.095663 B = 5371.188976 C = 6007.097657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.039 3.961 3 N -0.519 5.519 4 C 0.158 3.842 5 C -0.509 4.509 6 H 0.081 0.919 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.872 3.128 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.096 3.904 14 C -0.082 4.082 15 C -0.067 4.067 16 C -0.118 4.118 17 C -0.095 4.095 18 C -0.076 4.076 19 Cl -0.062 7.062 20 C 0.108 3.892 21 F -0.125 7.125 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.024 0.976 26 H 0.068 0.932 27 H -0.012 1.012 28 H 0.034 0.966 29 H 0.264 0.736 30 H 0.106 0.894 31 H 0.037 0.963 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.033 -12.775 9.924 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 N -0.243 5.243 4 C 0.032 3.968 5 C -0.547 4.547 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.031 4.031 14 C -0.083 4.083 15 C -0.085 4.085 16 C -0.137 4.137 17 C -0.114 4.114 18 C -0.104 4.104 19 Cl -0.033 7.033 20 C 0.088 3.912 21 F -0.103 7.103 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.005 0.995 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.055 0.945 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.785 -12.549 10.204 17.177 hybrid contribution -0.271 -0.973 -1.721 1.996 sum 5.514 -13.522 8.482 16.888 Atomic orbital electron populations 1.21820 0.95584 1.00465 1.02642 1.22381 0.95845 0.90706 0.99944 1.62107 1.07270 1.11936 1.43036 1.20270 0.95557 0.94987 0.85983 1.21015 1.38668 0.88279 1.06743 0.90139 1.24874 0.95662 0.94736 0.97913 1.69886 1.47471 1.01309 1.35202 0.86907 0.80537 0.79115 0.83508 1.20101 1.21181 1.19301 1.20982 0.89928 1.02450 0.89784 1.20174 0.99103 0.90160 0.98895 1.21214 0.95085 1.00829 0.91393 1.21188 1.00269 0.94456 0.97766 1.20889 0.99859 0.92649 0.97956 1.20929 1.08587 0.85911 0.94939 1.98365 1.97059 1.11554 1.96365 1.17302 1.01870 0.87511 0.84564 1.91506 1.89694 1.69473 1.59674 0.92620 0.93291 0.91779 0.95828 0.91349 0.99455 0.94843 0.92658 0.87542 0.94534 0.83766 0.84483 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.52 37.16 0.35 -2.16 16 2 C 0.04 0.72 4.34 -3.82 -0.02 0.71 16 3 N -0.52 -10.80 4.50 -237.51 -1.07 -11.87 16 4 C 0.16 3.77 3.64 -4.98 -0.02 3.75 16 5 C -0.51 -13.99 9.04 -34.44 -0.31 -14.30 16 6 H 0.08 2.37 7.56 -52.49 -0.40 1.97 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 9 Si 0.87 21.25 27.40 -169.99 -4.66 16.59 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.36 6.65 56.52 0.38 -5.98 16 13 C 0.10 1.80 4.85 -4.98 -0.02 1.77 16 14 C -0.08 -1.29 5.17 -104.56 -0.54 -1.83 16 15 C -0.07 -0.90 9.67 -39.59 -0.38 -1.29 16 16 C -0.12 -1.30 10.04 -39.58 -0.40 -1.69 16 17 C -0.09 -1.04 9.83 -39.56 -0.39 -1.43 16 18 C -0.08 -1.00 6.33 -39.44 -0.25 -1.25 16 19 Cl -0.06 -0.76 28.62 -51.86 -1.48 -2.24 16 20 C 0.11 1.65 5.86 -39.39 -0.23 1.42 16 21 F -0.13 -2.03 13.44 2.25 0.03 -2.00 16 22 H 0.05 0.98 6.51 -51.93 -0.34 0.65 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 26 H 0.07 1.20 4.66 -51.93 -0.24 0.96 16 27 H -0.01 -0.30 7.39 -51.93 -0.38 -0.68 16 28 H 0.03 0.80 5.07 -51.93 -0.26 0.54 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.11 2.11 6.74 -51.93 -0.35 1.76 16 31 H 0.04 0.68 7.92 -51.93 -0.41 0.27 16 32 H 0.14 1.90 8.04 -52.49 -0.42 1.47 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -29.60 295.14 -8.34 -37.93 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -4.07 Total: -2.28 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -2.30 Total: -14.42 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.30 Total: -38.03 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.03 Total: -2.00 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.66 Total: 16.59 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.48 Total: -2.24 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.60 -8.34 -37.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127671773.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.266 kcal (2) G-P(sol) polarization free energy of solvation -29.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds