Wall clock time and date at job start Mon Mar 30 2020 01:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46905 * 109.46701 * 2 1 4 4 C 1.46904 * 110.99916 * 299.61026 * 3 2 1 5 5 C 1.50697 * 109.47119 * 166.10368 * 4 3 2 6 6 H 1.08001 * 120.00125 * 3.67154 * 5 4 3 7 7 C 1.37880 * 120.00121 * 183.67098 * 5 4 3 8 8 N 1.31518 * 119.99958 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00008 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47296 * 89.99552 * 9 7 5 11 11 H 1.48494 * 109.47139 * 210.00075 * 9 7 5 12 12 H 1.48503 * 109.46991 * 329.99933 * 9 7 5 13 13 C 1.46894 * 111.00132 * 175.66079 * 3 2 1 14 14 C 1.50701 * 109.47138 * 293.95481 * 13 3 2 15 15 C 1.38241 * 120.00407 * 260.27785 * 14 13 3 16 16 C 1.38224 * 120.04901 * 180.24591 * 15 14 13 17 17 C 1.38267 * 120.06018 * 359.75115 * 16 15 14 18 18 C 1.38274 * 120.01192 * 359.97009 * 17 16 15 19 19 Cl 1.73594 * 120.02581 * 179.97438 * 18 17 16 20 20 C 1.38399 * 120.01163 * 79.99327 * 14 13 3 21 21 F 1.35102 * 120.02835 * 0.03601 * 20 14 13 22 22 H 1.08998 * 109.47188 * 67.00161 * 1 2 3 23 23 H 1.09000 * 109.46663 * 187.00263 * 1 2 3 24 24 H 1.08996 * 109.47202 * 306.99427 * 1 2 3 25 25 H 1.08998 * 109.46998 * 240.00505 * 2 1 3 26 26 H 1.08996 * 109.47367 * 119.99383 * 2 1 3 27 27 H 1.08997 * 109.47466 * 286.10597 * 4 3 2 28 28 H 1.09004 * 109.46776 * 46.10594 * 4 3 2 29 29 H 0.97000 * 119.99790 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47639 * 173.95311 * 13 3 2 31 31 H 1.09000 * 109.47123 * 53.94804 * 13 3 2 32 32 H 1.07998 * 119.97653 * 359.97426 * 15 14 13 33 33 H 1.08002 * 119.97009 * 179.76771 * 16 15 14 34 34 H 1.08000 * 119.99209 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5562 2.1072 -1.1924 5 6 1.7773 3.5857 -1.0018 6 1 2.2719 3.9475 -0.1125 7 6 1.3483 4.4765 -1.9628 8 7 1.5409 5.7667 -1.7962 9 14 0.4923 3.8508 -3.5007 10 1 -0.9718 3.7871 -3.2611 11 1 0.7693 4.7728 -4.6312 12 1 0.9990 2.4948 -3.8323 13 6 3.4843 1.4257 0.1038 14 6 3.9075 0.8959 1.4496 15 6 4.2333 1.7735 2.4667 16 6 4.6265 1.2886 3.7000 17 6 4.6895 -0.0750 3.9199 18 6 4.3586 -0.9551 2.9061 19 17 4.4383 -2.6672 3.1816 20 6 3.9643 -0.4694 1.6694 21 9 3.6412 -1.3279 0.6775 22 1 -0.3633 0.4015 -0.9460 23 1 -0.3633 -1.0200 0.1253 24 1 -0.3633 0.6184 0.8208 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 2.1145 1.7657 -2.0639 28 1 0.4938 1.9153 -1.3433 29 1 1.2395 6.3934 -2.4725 30 1 3.8281 2.4542 -0.0062 31 1 3.9215 0.8104 -0.6826 32 1 4.1849 2.8389 2.2964 33 1 4.8844 1.9754 4.4926 34 1 4.9964 -0.4527 4.8840 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127671773.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:19 Heat of formation + Delta-G solvation = -35.216593 kcal Electronic energy + Delta-G solvation = -18796.188128 eV Core-core repulsion = 15668.917056 eV Total energy + Delta-G solvation = -3127.271072 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.16298 -40.37248 -38.60996 -37.50214 -34.73528 -33.25332 -31.56855 -31.39844 -29.32452 -26.36277 -24.41850 -23.69676 -22.91984 -21.22712 -19.07170 -18.74387 -17.71477 -17.43463 -17.25520 -16.47580 -16.04772 -15.62554 -15.43320 -15.23713 -14.68954 -14.48684 -14.41189 -14.04122 -13.77167 -13.50824 -13.04403 -12.93467 -12.67220 -12.46618 -12.34506 -12.28173 -12.24573 -11.92347 -11.87846 -11.52657 -11.43743 -10.75265 -9.89190 -9.71166 -9.09263 -8.27242 -6.29081 -0.02389 0.05181 0.95297 1.34196 1.35556 1.45572 2.34418 2.42160 3.04355 3.05960 3.26844 3.56704 3.83001 4.02432 4.13518 4.20278 4.28077 4.40807 4.57021 4.64538 4.66061 4.84158 4.89866 4.92863 4.98411 5.05566 5.11453 5.23477 5.26828 5.42712 5.55943 5.71466 5.97632 6.27457 6.60836 6.75680 7.33889 8.88779 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029066 B = 0.005212 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.095663 B = 5371.188976 C = 6007.097657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 N -0.531 5.531 4 C 0.168 3.832 5 C -0.511 4.511 6 H 0.046 0.954 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.937 3.063 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.257 1.257 13 C 0.102 3.898 14 C -0.102 4.102 15 C -0.077 4.077 16 C -0.101 4.101 17 C -0.080 4.080 18 C -0.081 4.081 19 Cl -0.053 7.053 20 C 0.091 3.909 21 F -0.136 7.136 22 H 0.046 0.954 23 H 0.079 0.921 24 H 0.056 0.944 25 H 0.021 0.979 26 H 0.079 0.921 27 H -0.019 1.019 28 H 0.038 0.962 29 H 0.266 0.734 30 H 0.082 0.918 31 H 0.030 0.970 32 H 0.139 0.861 33 H 0.175 0.825 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.931 -14.488 11.139 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 N -0.255 5.255 4 C 0.041 3.959 5 C -0.549 4.549 6 H 0.064 0.936 7 C -0.184 4.184 8 N -0.584 5.584 9 Si 0.761 3.239 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.181 1.181 13 C -0.026 4.026 14 C -0.104 4.104 15 C -0.096 4.096 16 C -0.119 4.119 17 C -0.099 4.099 18 C -0.108 4.108 19 Cl -0.024 7.024 20 C 0.070 3.930 21 F -0.115 7.115 22 H 0.065 0.935 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.097 0.903 27 H -0.001 1.001 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.157 0.843 33 H 0.193 0.807 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.689 -14.286 11.434 19.162 hybrid contribution -0.148 -0.447 -1.950 2.006 sum 5.541 -14.733 9.483 18.377 Atomic orbital electron populations 1.21815 0.94378 1.02216 1.01828 1.22433 0.96820 0.89072 1.00289 1.62043 1.08718 1.13474 1.41264 1.20027 0.95710 0.93057 0.87082 1.21213 1.37782 0.90447 1.05496 0.93577 1.25710 0.96531 0.94788 1.01338 1.70024 1.49057 1.02711 1.36650 0.85859 0.79722 0.78960 0.79318 1.18949 1.20683 1.18134 1.20816 0.88719 1.01079 0.91966 1.19928 1.01471 0.91039 0.97964 1.21323 0.95577 1.00443 0.92264 1.21558 0.98018 0.95191 0.97173 1.21343 0.97690 0.92237 0.98621 1.21091 1.08315 0.86825 0.94580 1.98369 1.96989 1.10842 1.96211 1.17410 1.03227 0.87055 0.85299 1.91466 1.89995 1.69674 1.60345 0.93506 0.90260 0.92460 0.96070 0.90326 1.00149 0.94419 0.92457 0.89958 0.95175 0.84275 0.80749 0.80914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.52 71.98 0.69 -4.04 16 2 C 0.04 1.50 4.34 86.30 0.37 1.88 16 3 N -0.53 -22.46 4.50 -905.36 -4.08 -26.54 16 4 C 0.17 8.13 3.64 85.56 0.31 8.44 16 5 C -0.51 -29.02 9.04 25.60 0.23 -28.79 16 6 H 0.05 2.86 7.56 -2.91 -0.02 2.84 16 7 C 0.01 0.81 5.47 84.65 0.46 1.27 16 8 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 9 Si 0.94 43.95 27.40 68.60 1.88 45.83 16 10 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.26 -11.51 6.65 99.48 0.66 -10.85 16 13 C 0.10 3.96 4.85 85.56 0.41 4.37 16 14 C -0.10 -3.26 5.17 -19.83 -0.10 -3.36 16 15 C -0.08 -2.05 9.67 22.27 0.22 -1.84 16 16 C -0.10 -1.90 10.04 22.27 0.22 -1.68 16 17 C -0.08 -1.48 9.83 22.29 0.22 -1.26 16 18 C -0.08 -1.95 6.33 22.36 0.14 -1.80 16 19 Cl -0.05 -1.17 28.62 -2.72 -0.08 -1.25 16 20 C 0.09 2.69 5.86 22.39 0.13 2.82 16 21 F -0.14 -4.37 13.44 44.97 0.60 -3.76 16 22 H 0.05 1.59 6.51 -2.39 -0.02 1.57 16 23 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.02 0.77 8.01 -2.39 -0.02 0.76 16 26 H 0.08 2.70 4.66 -2.39 -0.01 2.69 16 27 H -0.02 -0.95 7.39 -2.39 -0.02 -0.96 16 28 H 0.04 1.80 5.07 -2.39 -0.01 1.78 16 29 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.08 3.51 6.74 -2.39 -0.02 3.50 16 31 H 0.03 1.18 7.92 -2.39 -0.02 1.16 16 32 H 0.14 3.75 8.04 -2.91 -0.02 3.73 16 33 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -65.07 295.14 3.00 -62.07 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: 1.06 Total: 5.28 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 3.31 Total: -23.99 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -3.78 Total: -84.18 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.60 Total: -3.76 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -65.07 3.00 -62.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127671773.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.856 kcal (2) G-P(sol) polarization free energy of solvation -65.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds