Wall clock time and date at job start Mon Mar 30 2020 00:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36000 * 116.99905 * 2 1 4 4 C 1.38561 * 120.06777 * 0.24282 * 3 2 1 5 5 C 1.38333 * 119.98830 * 180.27327 * 4 3 2 6 6 Cl 1.73601 * 119.94281 * 179.76659 * 5 4 3 7 7 C 1.38360 * 120.12068 * 359.73920 * 5 4 3 8 8 C 1.38243 * 120.13205 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99299 * 179.97438 * 8 7 5 10 10 N 1.46907 * 109.46985 * 260.02237 * 9 8 7 11 11 C 1.46900 * 110.99703 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46804 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99897 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99821 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99710 * 179.97438 * 14 12 11 16 16 Si 1.86791 * 119.99992 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47018 * 90.00552 * 16 14 12 18 18 H 1.48499 * 109.47262 * 210.00685 * 16 14 12 19 19 H 1.48499 * 109.47446 * 330.00625 * 16 14 12 20 20 C 1.38553 * 120.00862 * 0.02562 * 8 7 5 21 21 O 1.36017 * 120.05578 * 179.97438 * 20 8 7 22 22 H 1.09000 * 109.47094 * 59.99276 * 1 2 3 23 23 H 1.08998 * 109.47120 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46767 * 299.99387 * 1 2 3 25 25 H 1.08001 * 120.00483 * 0.03391 * 4 3 2 26 26 H 1.08000 * 119.93560 * 180.02562 * 7 5 4 27 27 H 1.08994 * 109.47131 * 20.02294 * 9 8 7 28 28 H 1.09001 * 109.47178 * 140.02423 * 9 8 7 29 29 H 1.00900 * 110.99944 * 303.95629 * 10 9 8 30 30 H 1.08995 * 109.47451 * 300.00138 * 11 10 9 31 31 H 1.08996 * 109.46943 * 60.00672 * 11 10 9 32 32 H 0.96996 * 120.00229 * 179.97438 * 15 14 12 33 33 H 0.96700 * 114.00140 * 90.00141 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3747 0.0051 5 6 1.9228 3.6064 -0.0006 6 17 0.9778 5.0627 -0.0004 7 6 3.3044 3.6799 -0.0060 8 6 4.0609 2.5228 -0.0062 9 6 5.5655 2.6064 -0.0126 10 7 6.0621 2.3905 -1.3782 11 6 7.5285 2.4658 -1.4231 12 6 8.0000 2.2405 -2.8367 13 1 7.2820 2.0592 -3.6229 14 6 9.3479 2.2649 -3.1260 15 7 9.7593 2.0679 -4.3595 16 14 10.5895 2.5779 -1.7660 17 1 10.9963 1.2846 -1.1599 18 1 11.7830 3.2565 -2.3319 19 1 9.9763 3.4412 -0.7249 20 6 3.4359 1.2862 -0.0015 21 8 4.1792 0.1472 -0.0022 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.2145 2.3195 0.0096 26 1 3.7929 4.6431 -0.0100 27 1 5.8761 3.5915 0.3355 28 1 5.9748 1.8420 0.6479 29 1 5.7333 1.5111 -1.7477 30 1 7.8524 3.4500 -1.0850 31 1 7.9516 1.7006 -0.7724 32 1 10.7074 2.0854 -4.5631 33 1 4.3975 -0.1806 0.8810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132357720.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:00 Heat of formation + Delta-G solvation = -59.718993 kcal Electronic energy + Delta-G solvation = -18115.993095 eV Core-core repulsion = 14975.286729 eV Total energy + Delta-G solvation = -3140.706366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64460 -38.28025 -37.19941 -36.08239 -35.19850 -32.53887 -30.87088 -29.73687 -27.83885 -27.13588 -24.45923 -22.64009 -21.32120 -21.01596 -18.61591 -17.77242 -16.94829 -16.72869 -16.15087 -15.58336 -15.07968 -14.92756 -14.34625 -14.13765 -13.75305 -13.68050 -13.17902 -12.62182 -12.55100 -12.39376 -11.94779 -11.81947 -11.62433 -11.55207 -11.12018 -10.91242 -10.66646 -10.63185 -10.32671 -9.81137 -9.27259 -8.81215 -8.57553 -8.24603 -7.49231 -6.03271 -4.01215 0.90260 1.15899 1.95013 2.98483 3.29809 3.35228 3.37450 3.39262 4.08459 4.43689 4.56572 4.75526 4.89255 4.92486 5.04436 5.19745 5.23530 5.28846 5.33952 5.41913 5.63767 5.83202 5.98468 6.04766 6.36377 6.39965 6.75853 6.99220 7.02045 7.60330 7.67540 7.87958 8.33750 8.66632 9.05597 9.58071 11.10180 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022451 B = 0.004333 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.845312 B = 6459.971185 C = 7206.086640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.303 6.303 3 C 0.114 3.886 4 C -0.196 4.196 5 C -0.004 4.004 6 Cl -0.069 7.069 7 C -0.113 4.113 8 C -0.043 4.043 9 C 0.099 3.901 10 N -0.672 5.672 11 C 0.165 3.835 12 C -0.515 4.515 13 H 0.079 0.921 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.879 3.121 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.087 3.913 21 O -0.475 6.475 22 H 0.057 0.943 23 H 0.101 0.899 24 H 0.055 0.945 25 H 0.139 0.861 26 H 0.141 0.859 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.344 0.656 30 H 0.027 0.973 31 H -0.019 1.019 32 H 0.264 0.736 33 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.440 -0.343 13.997 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.067 3.933 4 C -0.216 4.216 5 C -0.031 4.031 6 Cl -0.040 7.040 7 C -0.133 4.133 8 C -0.045 4.045 9 C -0.030 4.030 10 N -0.303 5.303 11 C 0.037 3.963 12 C -0.553 4.553 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.706 3.294 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.192 1.192 20 C 0.040 3.960 21 O -0.284 6.284 22 H 0.076 0.924 23 H 0.120 0.880 24 H 0.073 0.927 25 H 0.157 0.843 26 H 0.159 0.841 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.162 0.838 30 H 0.045 0.955 31 H -0.001 1.001 32 H 0.073 0.927 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -19.379 0.287 13.076 23.380 hybrid contribution 0.608 -0.476 1.483 1.672 sum -18.770 -0.189 14.559 23.756 Atomic orbital electron populations 1.23116 0.78469 1.04129 1.01415 1.86188 1.21208 1.25630 1.88544 1.19193 0.91480 0.84502 0.98106 1.20878 1.00446 0.90249 1.10006 1.20556 0.91754 0.87011 1.03747 1.98366 1.72566 1.36214 1.96872 1.20805 0.90866 0.99309 1.02316 1.20092 0.97123 0.90703 0.96555 1.20783 0.87622 1.01387 0.93218 1.60599 1.12749 1.40770 1.16201 1.20029 0.83030 0.95448 0.97789 1.21049 0.92850 1.48581 0.92849 0.90265 1.24901 0.98236 0.94808 0.95376 1.69898 1.15333 1.50222 1.18463 0.86810 0.81200 0.78755 0.82628 1.20341 1.21168 1.19173 1.17644 0.85962 0.86627 1.05729 1.84970 1.71548 1.39010 1.32881 0.92438 0.88034 0.92661 0.84294 0.84083 0.90371 0.94693 0.83819 0.95511 1.00135 0.92651 0.75990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.64 10.28 -34.26 -0.35 -4.00 16 3 C 0.11 1.47 6.70 -39.13 -0.26 1.21 16 4 C -0.20 -2.27 8.82 -39.43 -0.35 -2.62 16 5 C 0.00 -0.05 6.32 -39.50 -0.25 -0.30 16 6 Cl -0.07 -0.76 28.95 -51.86 -1.50 -2.27 16 7 C -0.11 -1.54 9.44 -39.53 -0.37 -1.91 16 8 C -0.04 -0.64 5.40 -104.50 -0.56 -1.20 16 9 C 0.10 1.64 5.47 -4.97 -0.03 1.62 16 10 N -0.67 -14.29 6.48 -116.34 -0.75 -15.04 16 11 C 0.16 4.04 4.51 -4.97 -0.02 4.01 16 12 C -0.52 -15.02 9.87 -34.44 -0.34 -15.36 16 13 H 0.08 2.53 8.06 -52.48 -0.42 2.10 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 15 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 16 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 20 C 0.09 1.24 6.69 -39.13 -0.26 0.98 16 21 O -0.48 -6.70 12.46 -34.32 -0.43 -7.13 16 22 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 23 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 25 H 0.14 1.28 6.30 -52.49 -0.33 0.95 16 26 H 0.14 1.79 8.03 -52.49 -0.42 1.37 16 27 H 0.08 1.23 8.00 -51.93 -0.42 0.81 16 28 H 0.04 0.55 7.85 -51.93 -0.41 0.14 16 29 H 0.34 7.50 8.65 -39.29 -0.34 7.16 16 30 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 31 H -0.02 -0.46 7.57 -51.93 -0.39 -0.85 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.38 3.61 9.06 45.56 0.41 4.02 16 LS Contribution 301.36 15.07 4.54 4.54 Total: -1.00 -33.04 301.36 -7.02 -40.06 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.08 Total: 4.56 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.55 Total: -10.48 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.02 Total: -42.30 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.78 Total: -11.12 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.04 -7.02 -40.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132357720.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.657 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds