Wall clock time and date at job start Mon Mar 30 2020 00:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36000 * 116.99905 * 2 1 4 4 C 1.38561 * 120.06777 * 0.24282 * 3 2 1 5 5 C 1.38333 * 119.98830 * 180.27327 * 4 3 2 6 6 Cl 1.73601 * 119.94281 * 179.76659 * 5 4 3 7 7 C 1.38360 * 120.12068 * 359.73920 * 5 4 3 8 8 C 1.38243 * 120.13205 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99299 * 179.97438 * 8 7 5 10 10 N 1.46907 * 109.46985 * 260.02237 * 9 8 7 11 11 C 1.46900 * 110.99703 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46804 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99897 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99821 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99710 * 179.97438 * 14 12 11 16 16 Si 1.86791 * 119.99992 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47018 * 90.00552 * 16 14 12 18 18 H 1.48499 * 109.47262 * 210.00685 * 16 14 12 19 19 H 1.48499 * 109.47446 * 330.00625 * 16 14 12 20 20 C 1.38553 * 120.00862 * 0.02562 * 8 7 5 21 21 O 1.36017 * 120.05578 * 179.97438 * 20 8 7 22 22 H 1.09000 * 109.47094 * 59.99276 * 1 2 3 23 23 H 1.08998 * 109.47120 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46767 * 299.99387 * 1 2 3 25 25 H 1.08001 * 120.00483 * 0.03391 * 4 3 2 26 26 H 1.08000 * 119.93560 * 180.02562 * 7 5 4 27 27 H 1.08994 * 109.47131 * 20.02294 * 9 8 7 28 28 H 1.09001 * 109.47178 * 140.02423 * 9 8 7 29 29 H 1.00900 * 110.99944 * 303.95629 * 10 9 8 30 30 H 1.08995 * 109.47451 * 300.00138 * 11 10 9 31 31 H 1.08996 * 109.46943 * 60.00672 * 11 10 9 32 32 H 0.96996 * 120.00229 * 179.97438 * 15 14 12 33 33 H 0.96700 * 114.00140 * 90.00141 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3747 0.0051 5 6 1.9228 3.6064 -0.0006 6 17 0.9778 5.0627 -0.0004 7 6 3.3044 3.6799 -0.0060 8 6 4.0609 2.5228 -0.0062 9 6 5.5655 2.6064 -0.0126 10 7 6.0621 2.3905 -1.3782 11 6 7.5285 2.4658 -1.4231 12 6 8.0000 2.2405 -2.8367 13 1 7.2820 2.0592 -3.6229 14 6 9.3479 2.2649 -3.1260 15 7 9.7593 2.0679 -4.3595 16 14 10.5895 2.5779 -1.7660 17 1 10.9963 1.2846 -1.1599 18 1 11.7830 3.2565 -2.3319 19 1 9.9763 3.4412 -0.7249 20 6 3.4359 1.2862 -0.0015 21 8 4.1792 0.1472 -0.0022 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.2145 2.3195 0.0096 26 1 3.7929 4.6431 -0.0100 27 1 5.8761 3.5915 0.3355 28 1 5.9748 1.8420 0.6479 29 1 5.7333 1.5111 -1.7477 30 1 7.8524 3.4500 -1.0850 31 1 7.9516 1.7006 -0.7724 32 1 10.7074 2.0854 -4.5631 33 1 4.3975 -0.1806 0.8810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132357720.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:59 Heat of formation + Delta-G solvation = -84.908014 kcal Electronic energy + Delta-G solvation = -18117.085373 eV Core-core repulsion = 14975.286729 eV Total energy + Delta-G solvation = -3141.798643 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.60298 -39.22957 -38.16164 -37.23737 -36.63309 -34.58653 -32.24144 -30.66547 -29.36317 -28.11382 -25.91238 -23.65464 -23.06805 -22.28980 -19.64860 -19.03472 -18.55735 -17.92209 -17.04440 -16.68718 -16.47263 -16.13304 -15.82639 -15.50342 -15.14943 -14.83932 -14.46071 -14.14506 -13.84066 -13.57318 -13.30880 -13.09128 -12.69445 -12.62366 -12.48191 -12.33663 -11.98185 -11.81049 -11.65174 -11.57430 -11.45584 -10.80812 -9.84212 -9.20620 -9.14123 -8.28733 -6.33906 -0.09456 0.16302 1.01025 1.36576 1.39229 1.50536 2.17110 2.35897 2.37447 3.05291 3.13217 3.52158 3.76194 3.96817 4.00316 4.17242 4.27341 4.37640 4.39541 4.52765 4.68329 4.74782 4.80934 4.86225 5.04291 5.10189 5.29331 5.39734 5.52743 5.93236 6.17799 6.52908 6.62826 6.74966 6.80213 7.30750 8.88485 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022451 B = 0.004333 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.845312 B = 6459.971185 C = 7206.086640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.321 6.321 3 C 0.109 3.891 4 C -0.185 4.185 5 C -0.008 4.008 6 Cl -0.056 7.056 7 C -0.120 4.120 8 C -0.059 4.059 9 C 0.102 3.898 10 N -0.683 5.683 11 C 0.176 3.824 12 C -0.531 4.531 13 H 0.031 0.969 14 C 0.006 3.994 15 N -0.950 5.950 16 Si 0.956 3.044 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.246 1.246 20 C 0.076 3.924 21 O -0.493 6.493 22 H 0.063 0.937 23 H 0.121 0.879 24 H 0.072 0.928 25 H 0.165 0.835 26 H 0.146 0.854 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.337 0.663 30 H 0.032 0.968 31 H -0.010 1.010 32 H 0.268 0.732 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.346 0.020 16.248 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.234 6.234 3 C 0.062 3.938 4 C -0.205 4.205 5 C -0.035 4.035 6 Cl -0.027 7.027 7 C -0.140 4.140 8 C -0.060 4.060 9 C -0.026 4.026 10 N -0.314 5.314 11 C 0.047 3.953 12 C -0.569 4.569 13 H 0.050 0.950 14 C -0.191 4.191 15 N -0.590 5.590 16 Si 0.779 3.221 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.169 1.169 20 C 0.030 3.970 21 O -0.305 6.305 22 H 0.082 0.918 23 H 0.139 0.861 24 H 0.091 0.909 25 H 0.183 0.817 26 H 0.163 0.837 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.154 0.846 30 H 0.050 0.950 31 H 0.007 0.993 32 H 0.077 0.923 33 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -20.322 0.649 15.355 25.479 hybrid contribution 0.708 -0.637 0.726 1.197 sum -19.614 0.012 16.080 25.363 Atomic orbital electron populations 1.23454 0.76156 1.05945 1.02554 1.86169 1.23628 1.25247 1.88364 1.19230 0.91229 0.85370 0.97948 1.21137 1.01686 0.89423 1.08238 1.20616 0.91561 0.87857 1.03467 1.98371 1.72056 1.35490 1.96791 1.20891 0.91554 0.99126 1.02392 1.19906 0.96038 0.91478 0.98618 1.20790 0.89048 1.02165 0.90634 1.60480 1.10797 1.40428 1.19701 1.19777 0.85164 0.95624 0.94703 1.21339 0.92550 1.48717 0.94292 0.95022 1.25933 1.00655 0.94227 0.98272 1.70064 1.16147 1.51579 1.21208 0.85590 0.77870 0.79423 0.79257 1.19069 1.20671 1.16902 1.17795 0.86798 0.86437 1.06013 1.84911 1.71757 1.39132 1.34687 0.91804 0.86077 0.90895 0.81729 0.83666 0.89457 0.93498 0.84615 0.95038 0.99281 0.92328 0.73990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -7.19 10.28 -79.67 -0.82 -8.01 16 3 C 0.11 2.67 6.70 22.56 0.15 2.82 16 4 C -0.19 -3.90 8.82 22.37 0.20 -3.71 16 5 C -0.01 -0.19 6.32 22.32 0.14 -0.05 16 6 Cl -0.06 -1.13 28.95 -2.72 -0.08 -1.21 16 7 C -0.12 -3.11 9.44 22.30 0.21 -2.90 16 8 C -0.06 -1.69 5.40 -19.79 -0.11 -1.80 16 9 C 0.10 3.29 5.47 85.55 0.47 3.75 16 10 N -0.68 -29.12 6.48 -521.98 -3.38 -32.50 16 11 C 0.18 8.53 4.51 85.56 0.39 8.91 16 12 C -0.53 -31.74 9.87 25.60 0.25 -31.49 16 13 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 14 C 0.01 0.38 5.47 84.66 0.46 0.84 16 15 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 16 Si 0.96 44.26 27.47 68.60 1.88 46.14 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 20 C 0.08 2.11 6.69 22.56 0.15 2.27 16 21 O -0.49 -13.70 12.46 -79.86 -1.00 -14.70 16 22 H 0.06 0.72 7.67 -2.39 -0.02 0.71 16 23 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 0.66 7.65 -2.38 -0.02 0.64 16 25 H 0.17 2.50 6.30 -2.91 -0.02 2.49 16 26 H 0.15 3.53 8.03 -2.91 -0.02 3.51 16 27 H 0.09 2.61 8.00 -2.39 -0.02 2.59 16 28 H 0.05 1.39 7.85 -2.39 -0.02 1.38 16 29 H 0.34 15.01 8.65 -89.69 -0.78 14.24 16 30 H 0.03 1.50 7.20 -2.39 -0.02 1.49 16 31 H -0.01 -0.49 7.57 -2.39 -0.02 -0.51 16 32 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 33 H 0.40 7.29 9.06 -74.06 -0.67 6.62 16 Total: -1.00 -72.18 301.36 -0.01 -72.19 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -0.35 Total: 18.43 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 3.43 Total: -20.07 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -3.08 Total: -92.77 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -1.81 Total: -22.71 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -72.18 -0.01 -72.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132357720.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.719 kcal (2) G-P(sol) polarization free energy of solvation -72.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds